Wall clock time and date at job start Mon Mar 30 2020 02:41:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52997 * 109.46856 * 2 1 4 4 C 1.50698 * 109.47070 * 179.97438 * 3 2 1 5 5 N 1.29946 * 126.29198 * 270.02327 * 4 3 2 6 6 O 1.21298 * 110.25505 * 179.68388 * 5 4 3 7 7 C 1.33643 * 109.80846 * 0.46943 * 6 5 4 8 8 C 1.50699 * 126.54930 * 179.80105 * 7 6 5 9 9 H 1.09004 * 109.46963 * 179.68504 * 8 7 6 10 10 C 1.53004 * 109.47110 * 59.69075 * 8 7 6 11 11 C 1.52997 * 109.47337 * 299.68812 * 8 7 6 12 12 C 1.50701 * 109.47212 * 184.99952 * 11 8 7 13 13 H 1.07998 * 120.00129 * 0.02562 * 12 11 8 14 14 C 1.37880 * 119.99861 * 179.97438 * 12 11 8 15 15 N 1.31510 * 119.99913 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 119.99734 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.47432 * 0.02562 * 16 14 12 18 18 H 1.48506 * 109.46890 * 120.00210 * 16 14 12 19 19 H 1.48501 * 109.47062 * 240.00257 * 16 14 12 20 20 N 1.31130 * 106.89670 * 359.53964 * 7 6 5 21 21 H 1.09000 * 109.47159 * 299.99606 * 1 2 3 22 22 H 1.08998 * 109.47001 * 60.00085 * 1 2 3 23 23 H 1.09003 * 109.46823 * 180.02562 * 1 2 3 24 24 H 1.08991 * 109.47032 * 239.99782 * 2 1 3 25 25 H 1.09003 * 109.46798 * 119.99211 * 2 1 3 26 26 H 1.09001 * 109.47224 * 59.99529 * 3 2 1 27 27 H 1.08998 * 109.47246 * 299.99765 * 3 2 1 28 28 H 1.09000 * 109.47403 * 59.99699 * 10 8 7 29 29 H 1.09001 * 109.46917 * 180.02562 * 10 8 7 30 30 H 1.09004 * 109.46741 * 299.99564 * 10 8 7 31 31 H 1.09002 * 109.47153 * 64.99954 * 11 8 7 32 32 H 1.09001 * 109.46832 * 305.00144 * 11 8 7 33 33 H 0.97002 * 119.99768 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 0.0006 5 7 4.3157 1.4423 1.0483 6 8 5.4816 1.4362 0.7137 7 6 5.5701 1.4421 -0.6197 8 6 6.8375 1.4418 -1.4350 9 1 6.5871 1.4419 -2.4959 10 6 7.6563 0.1922 -1.1045 11 6 7.6570 2.6907 -1.1043 12 6 8.8626 2.7539 -2.0063 13 1 9.0276 1.9808 -2.7421 14 6 9.7544 3.7993 -1.8928 15 7 9.5532 4.7410 -0.9971 16 14 11.2484 3.8780 -3.0113 17 1 11.2448 2.7075 -3.9252 18 1 11.2035 5.1292 -3.8100 19 1 12.4844 3.8602 -2.1883 20 7 4.3434 1.4424 -1.0831 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 1.8934 -0.5138 -0.8899 25 1 1.8934 -0.5137 0.8901 26 1 1.6766 1.9564 0.8899 27 1 1.6767 1.9563 -0.8900 28 1 7.0725 -0.6976 -1.3401 29 1 8.5732 0.1923 -1.6938 30 1 7.9067 0.1922 -0.0436 31 1 7.9827 2.6470 -0.0650 32 1 7.0431 3.5786 -1.2556 33 1 10.1809 5.4762 -0.9170 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000233392259.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:58 Heat of formation + Delta-G solvation = 14.196216 kcal Electronic energy + Delta-G solvation = -15039.350528 eV Core-core repulsion = 12487.593961 eV Total energy + Delta-G solvation = -2551.756567 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -46.56969 -37.61381 -37.43594 -35.31213 -34.35361 -32.35159 -29.02472 -28.78315 -26.28792 -24.73529 -24.05859 -22.59015 -20.98003 -19.04492 -18.64072 -18.17736 -16.53159 -16.41257 -15.79616 -15.75001 -15.00180 -14.49004 -14.41684 -13.89642 -13.62910 -13.17641 -13.00256 -12.88448 -12.80252 -12.66005 -12.53032 -12.25734 -12.17399 -12.10563 -11.87782 -11.67145 -11.52000 -11.23573 -10.76623 -10.55854 -8.18024 -6.28830 0.11948 1.20345 1.46429 1.47539 1.60083 1.86604 2.43937 2.65862 3.05106 3.17664 3.86296 3.99950 4.06609 4.17748 4.26689 4.29870 4.59889 4.63596 4.69009 4.85090 4.88403 4.89781 5.03661 5.07828 5.16659 5.21435 5.35936 5.38688 5.40612 5.57840 5.79928 6.16188 6.85573 7.13056 7.40714 8.94854 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.062174 B = 0.005135 C = 0.005060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 450.239395 B = 5451.619486 C = 5532.725765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.113 4.113 3 C -0.027 4.027 4 C 0.169 3.831 5 N -0.415 5.415 6 O 0.055 5.945 7 C 0.212 3.788 8 C 0.008 3.992 9 H 0.113 0.887 10 C -0.128 4.128 11 C 0.036 3.964 12 C -0.528 4.528 13 H 0.080 0.920 14 C 0.000 4.000 15 N -0.936 5.936 16 Si 0.967 3.033 17 H -0.253 1.253 18 H -0.285 1.285 19 H -0.282 1.282 20 N -0.511 5.511 21 H 0.064 0.936 22 H 0.065 0.935 23 H 0.067 0.933 24 H 0.060 0.940 25 H 0.056 0.944 26 H 0.102 0.898 27 H 0.106 0.894 28 H 0.068 0.932 29 H 0.085 0.915 30 H 0.054 0.946 31 H 0.004 0.996 32 H -0.013 1.013 33 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.590 -9.510 0.019 15.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.152 4.152 3 C -0.066 4.066 4 C -0.104 4.104 5 N -0.128 5.128 6 O 0.003 5.997 7 C -0.008 4.008 8 C -0.012 4.012 9 H 0.131 0.869 10 C -0.186 4.186 11 C -0.002 4.002 12 C -0.565 4.565 13 H 0.098 0.902 14 C -0.198 4.198 15 N -0.576 5.576 16 Si 0.791 3.209 17 H -0.177 1.177 18 H -0.211 1.211 19 H -0.208 1.208 20 N -0.245 5.245 21 H 0.083 0.917 22 H 0.084 0.916 23 H 0.086 0.914 24 H 0.079 0.921 25 H 0.075 0.925 26 H 0.121 0.879 27 H 0.124 0.876 28 H 0.087 0.913 29 H 0.104 0.896 30 H 0.073 0.927 31 H 0.023 0.977 32 H 0.005 0.995 33 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -13.131 -9.363 0.596 16.138 hybrid contribution 1.091 0.701 -0.212 1.314 sum -12.040 -8.662 0.384 14.837 Atomic orbital electron populations 1.21718 0.92603 1.02912 1.02891 1.21448 0.98052 0.93590 1.02067 1.20269 0.80125 1.00484 1.05701 1.26632 1.01747 0.98855 0.83191 1.74559 0.89541 1.23735 1.25014 1.85250 1.22522 1.66375 1.25535 1.29557 0.97542 0.91942 0.81726 1.20151 0.84570 0.99657 0.96826 0.86890 1.21736 1.00383 0.93935 1.02565 1.19044 0.94013 0.90407 0.96759 1.21540 1.07295 1.08844 1.18868 0.90239 1.25968 1.01572 0.95201 0.97016 1.70125 1.38332 1.12875 1.36279 0.85364 0.78433 0.78451 0.78604 1.17678 1.21074 1.20773 1.71939 0.99863 1.22729 1.29977 0.91682 0.91574 0.91404 0.92123 0.92472 0.87946 0.87574 0.91293 0.89616 0.92670 0.97747 0.99484 0.92856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.95 9.91 71.98 0.71 -1.24 16 2 C -0.11 -2.21 5.92 30.60 0.18 -2.03 16 3 C -0.03 -0.63 5.84 29.85 0.17 -0.46 16 4 C 0.17 5.75 7.47 138.46 1.03 6.79 16 5 N -0.41 -15.78 12.16 -60.32 -0.73 -16.51 16 6 O 0.05 2.22 11.31 74.84 0.85 3.07 16 7 C 0.21 8.41 7.02 88.38 0.62 9.03 16 8 C 0.01 0.33 2.81 -11.54 -0.03 0.30 16 9 H 0.11 4.29 8.14 -2.39 -0.02 4.27 16 10 C -0.13 -4.27 8.99 71.98 0.65 -3.63 16 11 C 0.04 1.81 4.43 29.85 0.13 1.94 16 12 C -0.53 -27.71 8.41 25.60 0.22 -27.49 16 13 H 0.08 3.83 7.06 -2.91 -0.02 3.81 16 14 C 0.00 0.01 5.46 84.66 0.46 0.48 16 15 N -0.94 -55.72 13.29 21.45 0.28 -55.43 16 16 Si 0.97 42.28 29.54 68.60 2.03 44.31 16 17 H -0.25 -10.26 7.11 99.48 0.71 -9.56 16 18 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 19 H -0.28 -12.17 7.11 99.48 0.71 -11.47 16 20 N -0.51 -19.37 11.55 -303.20 -3.50 -22.87 16 21 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 22 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 23 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 24 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 25 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 26 H 0.10 2.10 8.14 -2.39 -0.02 2.08 16 27 H 0.11 2.22 8.14 -2.39 -0.02 2.20 16 28 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 29 H 0.09 2.85 6.95 -2.39 -0.02 2.83 16 30 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 31 H 0.00 0.23 8.14 -2.39 -0.02 0.21 16 32 H -0.01 -0.75 8.14 -2.39 -0.02 -0.77 16 33 H 0.26 14.75 8.31 -92.71 -0.77 13.98 16 Total: -1.00 -63.49 285.43 4.15 -59.34 By element: Atomic # 1 Polarization: 3.33 SS G_CDS: 1.08 Total: 4.41 kcal Atomic # 6 Polarization: -20.47 SS G_CDS: 4.15 Total: -16.32 kcal Atomic # 7 Polarization: -90.86 SS G_CDS: -3.95 Total: -94.81 kcal Atomic # 8 Polarization: 2.22 SS G_CDS: 0.85 Total: 3.07 kcal Atomic # 14 Polarization: 42.28 SS G_CDS: 2.03 Total: 44.31 kcal Total: -63.49 4.15 -59.34 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233392259.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.540 kcal (2) G-P(sol) polarization free energy of solvation -63.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.344 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds