Wall clock time and date at job start Mon Mar 30 2020 02:44:01
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53007 * 1
3 3 C 1.53000 * 109.46572 * 2 1
4 4 C 1.53007 * 109.46572 * 180.02562 * 3 2 1
5 5 C 1.50706 * 109.47297 * 299.99693 * 3 2 1
6 6 H 1.07992 * 119.99562 * 120.00381 * 5 3 2
7 7 C 1.37882 * 119.99624 * 300.00632 * 5 3 2
8 8 N 1.31510 * 120.00208 * 359.97438 * 7 5 3
9 9 Si 1.86798 * 119.99598 * 179.97438 * 7 5 3
10 10 H 1.48502 * 109.47260 * 0.02562 * 9 7 5
11 11 H 1.48499 * 109.47228 * 119.99695 * 9 7 5
12 12 H 1.48503 * 109.47216 * 239.99952 * 9 7 5
13 13 C 1.52991 * 109.47539 * 59.99963 * 3 2 1
14 14 C 1.50706 * 109.47046 * 59.99576 * 13 3 2
15 15 N 1.31134 * 126.55062 * 90.25313 * 14 13 3
16 16 C 1.34487 * 105.61442 * 180.12309 * 15 14 13
17 17 C 1.50706 * 126.28725 * 179.90689 * 16 15 14
18 18 N 1.29949 * 107.42700 * 359.64093 * 16 15 14
19 19 O 1.21303 * 110.24828 * 0.22534 * 18 16 15
20 20 H 1.08996 * 109.47120 * 300.00093 * 1 2 3
21 21 H 1.09001 * 109.46992 * 60.00346 * 1 2 3
22 22 H 1.08997 * 109.46960 * 180.02562 * 1 2 3
23 23 H 1.08996 * 109.47120 * 239.99907 * 2 1 3
24 24 H 1.09001 * 109.46992 * 119.99654 * 2 1 3
25 25 H 1.09001 * 109.46992 * 299.99654 * 4 3 2
26 26 H 1.08996 * 109.47120 * 59.99907 * 4 3 2
27 27 H 1.08997 * 109.46960 * 179.97438 * 4 3 2
28 28 H 0.97005 * 119.99774 * 180.02562 * 8 7 5
29 29 H 1.09002 * 109.47334 * 299.99940 * 13 3 2
30 30 H 1.09001 * 109.47652 * 179.97438 * 13 3 2
31 31 H 1.09001 * 109.46953 * 269.70854 * 17 16 15
32 32 H 1.09000 * 109.47318 * 29.70452 * 17 16 15
33 33 H 1.09000 * 109.47161 * 149.71082 * 17 16 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 6 2.0399 1.4425 0.0000
4 6 3.5700 1.4425 -0.0006
5 6 1.5376 2.1529 -1.2305
6 1 0.9167 3.0310 -1.1314
7 6 1.8707 1.6818 -2.4828
8 7 2.6272 0.6128 -2.6034
9 14 1.2475 2.5619 -4.0080
10 1 0.4226 3.7287 -3.6039
11 1 2.4022 3.0290 -4.8166
12 1 0.4227 1.6281 -4.8161
13 6 1.5299 2.1638 1.2491
14 6 2.0323 1.4534 2.4797
15 7 3.1505 1.6966 3.1200
16 6 3.1791 0.8238 4.1428
17 6 4.2674 0.6978 5.1777
18 7 2.0933 0.1127 4.0782
19 8 1.4208 0.4587 3.1298
20 1 -0.3633 0.5138 0.8899
21 1 -0.3633 0.5138 -0.8900
22 1 -0.3633 -1.0276 0.0005
23 1 1.8934 -0.5138 -0.8899
24 1 1.8934 -0.5138 0.8900
25 1 3.9337 0.9286 0.8892
26 1 3.9329 0.9289 -0.8908
27 1 3.9333 2.4702 -0.0011
28 1 2.8619 0.2816 -3.4844
29 1 0.4399 2.1638 1.2492
30 1 1.8935 3.1914 1.2494
31 1 5.0143 -0.0179 4.8342
32 1 4.7381 1.6691 5.3300
33 1 3.8370 0.3512 6.1172
RHF calculation, no. of doubly occupied orbitals= 42
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000233947164.mol2 33
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:44:01
Heat of formation + Delta-G solvation = 49.605405 kcal
Electronic energy + Delta-G solvation = -16098.848667 eV
Core-core repulsion = 13548.627558 eV
Total energy + Delta-G solvation = -2550.221109 eV
No. of doubly occupied orbitals = 42
Molecular weight
(most abundant/longest-lived isotopes) = 224.127 amu
Computer time = 0.23 seconds
Orbital eigenvalues (eV)
-45.01197 -37.05170 -35.48824 -32.84854 -31.37977 -29.28090 -28.87465 -26.75378
-25.25176 -23.03842 -22.19432 -21.18821 -18.68185 -17.63217 -16.63974 -15.82931
-14.80552 -14.23542 -13.97187 -13.48988 -13.31953 -13.23941 -12.60508 -12.38925
-12.03378 -11.78670 -11.49180 -11.04576 -10.96872 -10.76258 -10.63797 -10.52725
-10.38724 -10.18479 -9.96459 -9.52920 -9.37384 -9.01489 -8.69574 -8.37316
-6.02221 -4.12702 1.72198 2.74953 3.26308 3.35440 3.37560 3.48996
4.14248 4.38207 4.52289 5.24463 5.40469 5.48969 5.59180 5.87721
6.04654 6.10607 6.24660 6.37863 6.49683 6.52847 6.56750 6.70474
6.94529 7.00340 7.15243 7.32392 7.44011 7.62856 7.70474 7.97797
8.13063 8.36159 8.71515 8.86198 9.52047 10.99046
Molecular weight = 224.13amu
Principal moments of inertia in cm(-1)
A = 0.049398 B = 0.007936 C = 0.007562
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 566.686806 B = 3527.197354 C = 3702.020024
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.134 4.134
2 C -0.112 4.112
3 C 0.079 3.921
4 C -0.132 4.132
5 C -0.503 4.503
6 H 0.060 0.940
7 C 0.068 3.932
8 N -0.883 5.883
9 Si 0.891 3.109
10 H -0.273 1.273
11 H -0.285 1.285
12 H -0.285 1.285
13 C -0.028 4.028
14 C 0.223 3.777
15 N -0.496 5.496
16 C 0.157 3.843
17 C -0.057 4.057
18 N -0.405 5.405
19 O 0.067 5.933
20 H 0.033 0.967
21 H 0.064 0.936
22 H 0.025 0.975
23 H 0.095 0.905
24 H 0.009 0.991
25 H 0.009 0.991
26 H 0.084 0.916
27 H 0.029 0.971
28 H 0.260 0.740
29 H 0.091 0.909
30 H 0.097 0.903
31 H 0.083 0.917
32 H 0.087 0.913
33 H 0.080 0.920
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.193 0.722 8.377 8.410
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.191 4.191
2 C -0.149 4.149
3 C 0.077 3.923
4 C -0.189 4.189
5 C -0.541 4.541
6 H 0.078 0.922
7 C -0.133 4.133
8 N -0.521 5.521
9 Si 0.719 3.281
10 H -0.197 1.197
11 H -0.211 1.211
12 H -0.211 1.211
13 C -0.067 4.067
14 C 0.004 3.996
15 N -0.231 5.231
16 C -0.116 4.116
17 C -0.115 4.115
18 N -0.118 5.118
19 O 0.012 5.988
20 H 0.052 0.948
21 H 0.083 0.917
22 H 0.044 0.956
23 H 0.114 0.886
24 H 0.028 0.972
25 H 0.028 0.972
26 H 0.103 0.897
27 H 0.049 0.951
28 H 0.070 0.930
29 H 0.109 0.891
30 H 0.115 0.885
31 H 0.102 0.898
32 H 0.105 0.895
33 H 0.099 0.901
Dipole moment (debyes) X Y Z Total
from point charges 0.081 0.193 8.896 8.898
hybrid contribution -0.311 0.395 -0.970 1.093
sum -0.230 0.588 7.926 7.951
Atomic orbital electron populations
1.21674 0.97749 0.98629 1.01055 1.21594 0.94393 0.98499 1.00459
1.18196 0.92950 0.92096 0.89024 1.21840 0.97282 0.99486 1.00316
1.20939 1.31550 1.12045 0.89534 0.92203 1.24859 0.94846 0.94863
0.98778 1.69819 1.36401 1.22683 1.23171 0.86552 0.78647 0.79724
0.83180 1.19738 1.21113 1.21071 1.20934 1.01410 0.98359 0.85951
1.29421 0.87314 0.86890 0.95982 1.71953 1.18868 1.25179 1.07063
1.25819 0.96263 0.91923 0.97576 1.20026 0.93501 1.04042 0.93964
1.74529 1.07455 1.23030 1.06756 1.85276 1.42055 1.41994 1.29471
0.94804 0.91729 0.95589 0.88634 0.97206 0.97243 0.89745 0.95146
0.92985 0.89057 0.88522 0.89789 0.89464 0.90123
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -2.73 9.31 37.16 0.35 -2.38 16
2 C -0.11 -2.54 4.52 -26.73 -0.12 -2.66 16
3 C 0.08 1.79 0.30 -155.66 -0.05 1.74 16
4 C -0.13 -3.11 7.98 37.16 0.30 -2.82 16
5 C -0.50 -12.33 6.75 -34.44 -0.23 -12.56 16
6 H 0.06 1.44 7.74 -52.49 -0.41 1.03 16
7 C 0.07 1.73 5.15 -17.82 -0.09 1.63 16
8 N -0.88 -23.21 9.35 55.43 0.52 -22.69 16
9 Si 0.89 19.98 29.54 -169.99 -5.02 14.96 16
10 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16
11 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16
12 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16
13 C -0.03 -0.54 4.50 -27.88 -0.13 -0.66 16
14 C 0.22 4.37 5.74 -13.05 -0.07 4.30 16
15 N -0.50 -9.71 10.82 -9.87 -0.11 -9.82 16
16 C 0.16 2.77 8.22 -156.37 -1.28 1.49 16
17 C -0.06 -0.70 10.51 36.01 0.38 -0.32 16
18 N -0.40 -7.70 12.16 30.90 0.38 -7.32 16
19 O 0.07 1.32 10.70 18.11 0.19 1.51 16
20 H 0.03 0.62 6.43 -51.93 -0.33 0.29 16
21 H 0.06 1.38 7.22 -51.93 -0.37 1.01 16
22 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16
23 H 0.10 2.44 6.07 -51.93 -0.32 2.12 16
24 H 0.01 0.21 6.75 -51.93 -0.35 -0.14 16
25 H 0.01 0.20 6.69 -51.93 -0.35 -0.15 16
26 H 0.08 2.19 6.07 -51.93 -0.31 1.87 16
27 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16
28 H 0.26 6.61 8.31 -40.82 -0.34 6.28 16
29 H 0.09 1.64 6.43 -51.93 -0.33 1.31 16
30 H 0.10 1.82 8.14 -51.93 -0.42 1.39 16
31 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16
32 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16
33 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16
LS Contribution 267.41 15.07 4.03 4.03
Total: -1.00 -27.09 267.41 -5.41 -32.50
By element:
Atomic # 1 Polarization: 3.52 SS G_CDS: -4.45 Total: -0.93 kcal
Atomic # 6 Polarization: -11.29 SS G_CDS: -0.96 Total: -12.25 kcal
Atomic # 7 Polarization: -40.62 SS G_CDS: 0.79 Total: -39.83 kcal
Atomic # 8 Polarization: 1.32 SS G_CDS: 0.19 Total: 1.51 kcal
Atomic # 14 Polarization: 19.98 SS G_CDS: -5.02 Total: 14.96 kcal
Total LS contribution 4.03 Total: 4.03 kcal
Total: -27.09 -5.41 -32.50 kcal
The number of atoms in the molecule is 33
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000233947164.mol2 33
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 82.107 kcal
(2) G-P(sol) polarization free energy of solvation -27.088 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.019 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.414 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.502 kcal
(6) G-S(sol) free energy of system = (1) + (5) 49.605 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.23 seconds