Wall clock time and date at job start Mon Mar 30 2020 02:44:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53000 * 109.46572 * 2 1 4 4 C 1.53007 * 109.46572 * 180.02562 * 3 2 1 5 5 C 1.50706 * 109.47297 * 299.99693 * 3 2 1 6 6 H 1.07992 * 119.99562 * 120.00381 * 5 3 2 7 7 C 1.37882 * 119.99624 * 300.00632 * 5 3 2 8 8 N 1.31510 * 120.00208 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 119.99598 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.47260 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.47228 * 119.99695 * 9 7 5 12 12 H 1.48503 * 109.47216 * 239.99952 * 9 7 5 13 13 C 1.52991 * 109.47539 * 59.99963 * 3 2 1 14 14 C 1.50706 * 109.47046 * 59.99576 * 13 3 2 15 15 N 1.31134 * 126.55062 * 90.25313 * 14 13 3 16 16 C 1.34487 * 105.61442 * 180.12309 * 15 14 13 17 17 C 1.50706 * 126.28725 * 179.90689 * 16 15 14 18 18 N 1.29949 * 107.42700 * 359.64093 * 16 15 14 19 19 O 1.21303 * 110.24828 * 0.22534 * 18 16 15 20 20 H 1.08996 * 109.47120 * 300.00093 * 1 2 3 21 21 H 1.09001 * 109.46992 * 60.00346 * 1 2 3 22 22 H 1.08997 * 109.46960 * 180.02562 * 1 2 3 23 23 H 1.08996 * 109.47120 * 239.99907 * 2 1 3 24 24 H 1.09001 * 109.46992 * 119.99654 * 2 1 3 25 25 H 1.09001 * 109.46992 * 299.99654 * 4 3 2 26 26 H 1.08996 * 109.47120 * 59.99907 * 4 3 2 27 27 H 1.08997 * 109.46960 * 179.97438 * 4 3 2 28 28 H 0.97005 * 119.99774 * 180.02562 * 8 7 5 29 29 H 1.09002 * 109.47334 * 299.99940 * 13 3 2 30 30 H 1.09001 * 109.47652 * 179.97438 * 13 3 2 31 31 H 1.09001 * 109.46953 * 269.70854 * 17 16 15 32 32 H 1.09000 * 109.47318 * 29.70452 * 17 16 15 33 33 H 1.09000 * 109.47161 * 149.71082 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 1.5376 2.1529 -1.2305 6 1 0.9167 3.0310 -1.1314 7 6 1.8707 1.6818 -2.4828 8 7 2.6272 0.6128 -2.6034 9 14 1.2475 2.5619 -4.0080 10 1 0.4226 3.7287 -3.6039 11 1 2.4022 3.0290 -4.8166 12 1 0.4227 1.6281 -4.8161 13 6 1.5299 2.1638 1.2491 14 6 2.0323 1.4534 2.4797 15 7 3.1505 1.6966 3.1200 16 6 3.1791 0.8238 4.1428 17 6 4.2674 0.6978 5.1777 18 7 2.0933 0.1127 4.0782 19 8 1.4208 0.4587 3.1298 20 1 -0.3633 0.5138 0.8899 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0276 0.0005 23 1 1.8934 -0.5138 -0.8899 24 1 1.8934 -0.5138 0.8900 25 1 3.9337 0.9286 0.8892 26 1 3.9329 0.9289 -0.8908 27 1 3.9333 2.4702 -0.0011 28 1 2.8619 0.2816 -3.4844 29 1 0.4399 2.1638 1.2492 30 1 1.8935 3.1914 1.2494 31 1 5.0143 -0.0179 4.8342 32 1 4.7381 1.6691 5.3300 33 1 3.8370 0.3512 6.1172 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000233947164.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:01 Heat of formation + Delta-G solvation = 49.605405 kcal Electronic energy + Delta-G solvation = -16098.848667 eV Core-core repulsion = 13548.627558 eV Total energy + Delta-G solvation = -2550.221109 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -45.01197 -37.05170 -35.48824 -32.84854 -31.37977 -29.28090 -28.87465 -26.75378 -25.25176 -23.03842 -22.19432 -21.18821 -18.68185 -17.63217 -16.63974 -15.82931 -14.80552 -14.23542 -13.97187 -13.48988 -13.31953 -13.23941 -12.60508 -12.38925 -12.03378 -11.78670 -11.49180 -11.04576 -10.96872 -10.76258 -10.63797 -10.52725 -10.38724 -10.18479 -9.96459 -9.52920 -9.37384 -9.01489 -8.69574 -8.37316 -6.02221 -4.12702 1.72198 2.74953 3.26308 3.35440 3.37560 3.48996 4.14248 4.38207 4.52289 5.24463 5.40469 5.48969 5.59180 5.87721 6.04654 6.10607 6.24660 6.37863 6.49683 6.52847 6.56750 6.70474 6.94529 7.00340 7.15243 7.32392 7.44011 7.62856 7.70474 7.97797 8.13063 8.36159 8.71515 8.86198 9.52047 10.99046 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.049398 B = 0.007936 C = 0.007562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 566.686806 B = 3527.197354 C = 3702.020024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.112 4.112 3 C 0.079 3.921 4 C -0.132 4.132 5 C -0.503 4.503 6 H 0.060 0.940 7 C 0.068 3.932 8 N -0.883 5.883 9 Si 0.891 3.109 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.285 1.285 13 C -0.028 4.028 14 C 0.223 3.777 15 N -0.496 5.496 16 C 0.157 3.843 17 C -0.057 4.057 18 N -0.405 5.405 19 O 0.067 5.933 20 H 0.033 0.967 21 H 0.064 0.936 22 H 0.025 0.975 23 H 0.095 0.905 24 H 0.009 0.991 25 H 0.009 0.991 26 H 0.084 0.916 27 H 0.029 0.971 28 H 0.260 0.740 29 H 0.091 0.909 30 H 0.097 0.903 31 H 0.083 0.917 32 H 0.087 0.913 33 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.193 0.722 8.377 8.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.149 4.149 3 C 0.077 3.923 4 C -0.189 4.189 5 C -0.541 4.541 6 H 0.078 0.922 7 C -0.133 4.133 8 N -0.521 5.521 9 Si 0.719 3.281 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.211 1.211 13 C -0.067 4.067 14 C 0.004 3.996 15 N -0.231 5.231 16 C -0.116 4.116 17 C -0.115 4.115 18 N -0.118 5.118 19 O 0.012 5.988 20 H 0.052 0.948 21 H 0.083 0.917 22 H 0.044 0.956 23 H 0.114 0.886 24 H 0.028 0.972 25 H 0.028 0.972 26 H 0.103 0.897 27 H 0.049 0.951 28 H 0.070 0.930 29 H 0.109 0.891 30 H 0.115 0.885 31 H 0.102 0.898 32 H 0.105 0.895 33 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 0.081 0.193 8.896 8.898 hybrid contribution -0.311 0.395 -0.970 1.093 sum -0.230 0.588 7.926 7.951 Atomic orbital electron populations 1.21674 0.97749 0.98629 1.01055 1.21594 0.94393 0.98499 1.00459 1.18196 0.92950 0.92096 0.89024 1.21840 0.97282 0.99486 1.00316 1.20939 1.31550 1.12045 0.89534 0.92203 1.24859 0.94846 0.94863 0.98778 1.69819 1.36401 1.22683 1.23171 0.86552 0.78647 0.79724 0.83180 1.19738 1.21113 1.21071 1.20934 1.01410 0.98359 0.85951 1.29421 0.87314 0.86890 0.95982 1.71953 1.18868 1.25179 1.07063 1.25819 0.96263 0.91923 0.97576 1.20026 0.93501 1.04042 0.93964 1.74529 1.07455 1.23030 1.06756 1.85276 1.42055 1.41994 1.29471 0.94804 0.91729 0.95589 0.88634 0.97206 0.97243 0.89745 0.95146 0.92985 0.89057 0.88522 0.89789 0.89464 0.90123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.73 9.31 37.16 0.35 -2.38 16 2 C -0.11 -2.54 4.52 -26.73 -0.12 -2.66 16 3 C 0.08 1.79 0.30 -155.66 -0.05 1.74 16 4 C -0.13 -3.11 7.98 37.16 0.30 -2.82 16 5 C -0.50 -12.33 6.75 -34.44 -0.23 -12.56 16 6 H 0.06 1.44 7.74 -52.49 -0.41 1.03 16 7 C 0.07 1.73 5.15 -17.82 -0.09 1.63 16 8 N -0.88 -23.21 9.35 55.43 0.52 -22.69 16 9 Si 0.89 19.98 29.54 -169.99 -5.02 14.96 16 10 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 11 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 12 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 13 C -0.03 -0.54 4.50 -27.88 -0.13 -0.66 16 14 C 0.22 4.37 5.74 -13.05 -0.07 4.30 16 15 N -0.50 -9.71 10.82 -9.87 -0.11 -9.82 16 16 C 0.16 2.77 8.22 -156.37 -1.28 1.49 16 17 C -0.06 -0.70 10.51 36.01 0.38 -0.32 16 18 N -0.40 -7.70 12.16 30.90 0.38 -7.32 16 19 O 0.07 1.32 10.70 18.11 0.19 1.51 16 20 H 0.03 0.62 6.43 -51.93 -0.33 0.29 16 21 H 0.06 1.38 7.22 -51.93 -0.37 1.01 16 22 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 23 H 0.10 2.44 6.07 -51.93 -0.32 2.12 16 24 H 0.01 0.21 6.75 -51.93 -0.35 -0.14 16 25 H 0.01 0.20 6.69 -51.93 -0.35 -0.15 16 26 H 0.08 2.19 6.07 -51.93 -0.31 1.87 16 27 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 28 H 0.26 6.61 8.31 -40.82 -0.34 6.28 16 29 H 0.09 1.64 6.43 -51.93 -0.33 1.31 16 30 H 0.10 1.82 8.14 -51.93 -0.42 1.39 16 31 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 33 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 LS Contribution 267.41 15.07 4.03 4.03 Total: -1.00 -27.09 267.41 -5.41 -32.50 By element: Atomic # 1 Polarization: 3.52 SS G_CDS: -4.45 Total: -0.93 kcal Atomic # 6 Polarization: -11.29 SS G_CDS: -0.96 Total: -12.25 kcal Atomic # 7 Polarization: -40.62 SS G_CDS: 0.79 Total: -39.83 kcal Atomic # 8 Polarization: 1.32 SS G_CDS: 0.19 Total: 1.51 kcal Atomic # 14 Polarization: 19.98 SS G_CDS: -5.02 Total: 14.96 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -27.09 -5.41 -32.50 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233947164.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.107 kcal (2) G-P(sol) polarization free energy of solvation -27.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.502 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds