Wall clock time and date at job start Mon Mar 30 2020 03:18:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.47846 * 111.00090 * 2 1 4 4 C 1.54901 * 104.80026 * 146.35877 * 3 2 1 5 5 C 1.55142 * 101.65301 * 322.92778 * 4 3 2 6 6 C 1.47440 * 110.99578 * 120.83449 * 2 1 3 7 7 H 1.09008 * 109.88960 * 117.18065 * 6 2 1 8 8 C 1.50703 * 109.89391 * 356.15551 * 6 2 1 9 9 O 1.21555 * 119.99702 * 281.61933 * 8 6 2 10 10 C 1.40157 * 120.00421 * 101.60928 * 8 6 2 11 11 C 1.39461 * 120.00294 * 182.27367 * 10 8 6 12 12 N 1.38266 * 120.00365 * 173.37506 * 11 10 8 13 13 C 1.40053 * 119.99869 * 353.36966 * 11 10 8 14 14 H 1.07996 * 120.00125 * 318.16354 * 13 11 10 15 15 C 1.40677 * 119.99643 * 138.16012 * 13 11 10 16 16 N 1.30393 * 120.00362 * 351.37033 * 15 13 11 17 17 Si 1.86803 * 119.99995 * 171.37797 * 15 13 11 18 18 H 1.48494 * 109.47391 * 89.99402 * 17 15 13 19 19 H 1.48496 * 109.47060 * 210.00090 * 17 15 13 20 20 H 1.48504 * 109.46718 * 329.99715 * 17 15 13 21 21 H 1.08991 * 109.47339 * 304.85865 * 1 2 3 22 22 H 1.09002 * 109.46649 * 64.85907 * 1 2 3 23 23 H 1.08996 * 109.46936 * 184.85390 * 1 2 3 24 24 H 1.09001 * 110.36918 * 265.19191 * 3 2 1 25 25 H 1.09005 * 110.37077 * 27.41594 * 3 2 1 26 26 H 1.08992 * 110.98826 * 81.01888 * 4 3 2 27 27 H 1.09000 * 110.99258 * 204.80067 * 4 3 2 28 28 H 1.08996 * 110.70685 * 277.27401 * 5 4 3 29 29 H 1.09004 * 110.70949 * 154.03159 * 5 4 3 30 30 H 1.08008 * 119.99745 * 2.27519 * 10 8 6 31 31 H 0.96999 * 120.00292 * 172.58165 * 12 11 10 32 32 H 0.97007 * 119.99525 * 352.30785 * 12 11 10 33 33 H 0.97000 * 120.00100 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9989 1.3803 0.0000 4 6 3.3047 1.3028 0.8297 5 6 2.9158 0.2824 1.9316 6 6 1.9973 -0.7055 1.1819 7 1 2.5674 -1.5800 0.8678 8 6 0.8610 -1.1290 2.0767 9 8 0.3287 -0.3173 2.8084 10 6 0.4179 -2.4586 2.0651 11 6 -0.6643 -2.8400 2.8579 12 7 -1.1885 -4.1144 2.7455 13 6 -1.2200 -1.9320 3.7679 14 1 -0.5761 -1.3018 4.3634 15 6 -2.6170 -1.8408 3.9063 16 7 -3.3972 -2.4739 3.0752 17 14 -3.3544 -0.8125 5.2805 18 1 -3.5601 0.5782 4.8024 19 1 -4.6585 -1.3938 5.6885 20 1 -2.4305 -0.8047 6.4431 21 1 -0.3633 0.5873 0.8432 22 1 -0.3633 0.4366 -0.9304 23 1 -0.3633 -1.0240 0.0870 24 1 2.2148 1.7038 -1.0183 25 1 1.2880 2.0596 0.4705 26 1 4.1301 0.9283 0.2244 27 1 3.5498 2.2723 1.2635 28 1 2.3742 0.7749 2.7392 29 1 3.7999 -0.2278 2.3140 30 1 0.9145 -3.1880 1.4422 31 1 -1.8681 -4.4161 3.3685 32 1 -0.8796 -4.7056 2.0411 33 1 -4.3605 -2.4107 3.1704 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238351699.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:23 Heat of formation + Delta-G solvation = -27.708555 kcal Electronic energy + Delta-G solvation = -15940.759544 eV Core-core repulsion = 13387.185850 eV Total energy + Delta-G solvation = -2553.573694 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.19584 -36.55147 -34.94153 -32.39160 -31.44772 -29.23931 -28.16924 -25.92979 -24.86924 -21.99045 -20.67715 -19.41119 -17.93011 -16.93396 -15.73760 -15.23548 -15.10021 -14.74174 -14.00855 -13.50837 -13.14035 -13.07975 -12.64718 -12.01877 -11.96047 -11.52889 -11.35883 -11.08352 -10.85342 -10.73861 -10.71395 -10.58187 -10.49136 -10.11509 -9.89025 -9.63584 -9.07492 -8.12499 -7.17774 -6.91614 -6.14399 -4.63550 2.89082 3.08683 3.15720 3.39183 3.96534 4.37929 4.86178 5.15411 5.25190 5.35635 5.42911 5.54661 5.87955 6.02685 6.08581 6.15928 6.22565 6.29721 6.39411 6.49866 6.62116 6.86470 6.90468 7.13258 7.34657 7.64319 7.66433 7.78673 7.98581 8.23351 8.48597 8.71918 9.27709 9.35331 9.91769 10.11793 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.034126 B = 0.008749 C = 0.008065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.293881 B = 3199.662528 C = 3470.770629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 N -0.515 5.515 3 C 0.040 3.960 4 C -0.127 4.127 5 C -0.131 4.131 6 C 0.031 3.969 7 H 0.081 0.919 8 C 0.371 3.629 9 O -0.538 6.538 10 C -0.518 4.518 11 C 0.407 3.593 12 N -0.852 5.852 13 C -0.433 4.433 14 H 0.108 0.892 15 C 0.078 3.922 16 N -0.807 5.807 17 Si 0.918 3.082 18 H -0.268 1.268 19 H -0.280 1.280 20 H -0.260 1.260 21 H 0.044 0.956 22 H 0.050 0.950 23 H 0.081 0.919 24 H 0.070 0.930 25 H 0.044 0.956 26 H 0.068 0.932 27 H 0.066 0.934 28 H 0.079 0.921 29 H 0.064 0.936 30 H 0.073 0.927 31 H 0.389 0.611 32 H 0.373 0.627 33 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.528 1.721 -1.959 5.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 N -0.240 5.240 3 C -0.088 4.088 4 C -0.165 4.165 5 C -0.169 4.169 6 C -0.078 4.078 7 H 0.099 0.901 8 C 0.266 3.734 9 O -0.428 6.428 10 C -0.546 4.546 11 C 0.293 3.707 12 N -0.385 5.385 13 C -0.467 4.467 14 H 0.126 0.874 15 C -0.141 4.141 16 N -0.436 5.436 17 Si 0.742 3.258 18 H -0.193 1.193 19 H -0.205 1.205 20 H -0.184 1.184 21 H 0.062 0.938 22 H 0.069 0.931 23 H 0.100 0.900 24 H 0.089 0.911 25 H 0.062 0.938 26 H 0.086 0.914 27 H 0.084 0.916 28 H 0.098 0.902 29 H 0.083 0.917 30 H 0.091 0.909 31 H 0.217 0.783 32 H 0.199 0.801 33 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 4.248 1.854 -2.126 5.100 hybrid contribution -0.842 0.355 0.833 1.236 sum 3.406 2.209 -1.293 4.261 Atomic orbital electron populations 1.22646 0.87361 1.03625 0.99978 1.63820 1.08728 1.13034 1.38453 1.23050 0.95633 0.90810 0.99332 1.22664 0.97435 0.99117 0.97320 1.22737 0.98986 0.96776 0.98388 1.22964 0.97607 0.96877 0.90306 0.90138 1.19430 0.83198 0.89127 0.81672 1.90460 1.55895 1.55609 1.40788 1.20808 1.14544 0.97589 1.21623 1.17618 0.85435 0.82547 0.85067 1.42739 1.46158 1.13807 1.35796 1.19814 0.91016 1.17011 1.18811 0.87408 1.26136 0.97343 0.94844 0.95761 1.69538 1.05847 1.35975 1.32192 0.86152 0.77953 0.80432 0.81246 1.19260 1.20543 1.18369 0.93751 0.93145 0.89990 0.91134 0.93797 0.91352 0.91564 0.90201 0.91703 0.90860 0.78302 0.80120 0.90736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.26 8.37 60.07 0.50 0.76 16 2 N -0.52 -10.30 5.44 -232.94 -1.27 -11.57 16 3 C 0.04 0.68 6.73 -2.30 -0.02 0.66 16 4 C -0.13 -1.96 7.08 -24.59 -0.17 -2.13 16 5 C -0.13 -2.40 6.42 -24.91 -0.16 -2.56 16 6 C 0.03 0.66 3.74 -67.87 -0.25 0.41 16 7 H 0.08 1.65 8.03 -51.92 -0.42 1.23 16 8 C 0.37 9.24 3.78 -33.59 -0.13 9.11 16 9 O -0.54 -14.87 11.80 5.32 0.06 -14.81 16 10 C -0.52 -13.11 8.92 -38.41 -0.34 -13.45 16 11 C 0.41 10.42 6.23 -83.83 -0.52 9.90 16 12 N -0.85 -18.56 8.33 32.47 0.27 -18.29 16 13 C -0.43 -11.63 7.11 -37.98 -0.27 -11.90 16 14 H 0.11 3.08 6.41 -52.49 -0.34 2.74 16 15 C 0.08 1.94 5.27 -17.24 -0.09 1.85 16 16 N -0.81 -20.12 12.13 55.59 0.67 -19.45 16 17 Si 0.92 19.54 29.57 -169.99 -5.03 14.52 16 18 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 19 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 20 H -0.26 -5.51 7.11 56.52 0.40 -5.11 16 21 H 0.04 1.05 6.56 -51.93 -0.34 0.71 16 22 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 23 H 0.08 1.92 6.67 -51.93 -0.35 1.58 16 24 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 25 H 0.04 0.78 7.70 -51.93 -0.40 0.38 16 26 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 27 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.08 1.64 7.04 -51.93 -0.37 1.27 16 29 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 30 H 0.07 1.76 8.05 -52.48 -0.42 1.33 16 31 H 0.39 8.26 8.01 -40.82 -0.33 7.93 16 32 H 0.37 7.17 8.83 -40.82 -0.36 6.81 16 33 H 0.28 6.47 8.29 -40.82 -0.34 6.13 16 LS Contribution 268.55 15.07 4.05 4.05 Total: -1.00 -28.57 268.55 -7.26 -35.82 By element: Atomic # 1 Polarization: 21.62 SS G_CDS: -4.56 Total: 17.06 kcal Atomic # 6 Polarization: -5.89 SS G_CDS: -1.45 Total: -7.34 kcal Atomic # 7 Polarization: -48.98 SS G_CDS: -0.32 Total: -49.30 kcal Atomic # 8 Polarization: -14.87 SS G_CDS: 0.06 Total: -14.81 kcal Atomic # 14 Polarization: 19.54 SS G_CDS: -5.03 Total: 14.52 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -28.57 -7.26 -35.82 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238351699.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.115 kcal (2) G-P(sol) polarization free energy of solvation -28.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds