Wall clock time and date at job start Mon Mar 30 2020 03:18:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.47846 * 111.00090 * 2 1 4 4 C 1.54901 * 104.80026 * 146.35877 * 3 2 1 5 5 C 1.55142 * 101.65301 * 322.92778 * 4 3 2 6 6 C 1.47440 * 110.99578 * 120.83449 * 2 1 3 7 7 H 1.09008 * 109.88960 * 117.18065 * 6 2 1 8 8 C 1.50703 * 109.89391 * 356.15551 * 6 2 1 9 9 O 1.21555 * 119.99702 * 281.61933 * 8 6 2 10 10 C 1.40157 * 120.00421 * 101.60928 * 8 6 2 11 11 C 1.39461 * 120.00294 * 182.27367 * 10 8 6 12 12 N 1.38266 * 120.00365 * 173.37506 * 11 10 8 13 13 C 1.40053 * 119.99869 * 353.36966 * 11 10 8 14 14 H 1.07996 * 120.00125 * 318.16354 * 13 11 10 15 15 C 1.40677 * 119.99643 * 138.16012 * 13 11 10 16 16 N 1.30393 * 120.00362 * 351.37033 * 15 13 11 17 17 Si 1.86803 * 119.99995 * 171.37797 * 15 13 11 18 18 H 1.48494 * 109.47391 * 89.99402 * 17 15 13 19 19 H 1.48496 * 109.47060 * 210.00090 * 17 15 13 20 20 H 1.48504 * 109.46718 * 329.99715 * 17 15 13 21 21 H 1.08991 * 109.47339 * 304.85865 * 1 2 3 22 22 H 1.09002 * 109.46649 * 64.85907 * 1 2 3 23 23 H 1.08996 * 109.46936 * 184.85390 * 1 2 3 24 24 H 1.09001 * 110.36918 * 265.19191 * 3 2 1 25 25 H 1.09005 * 110.37077 * 27.41594 * 3 2 1 26 26 H 1.08992 * 110.98826 * 81.01888 * 4 3 2 27 27 H 1.09000 * 110.99258 * 204.80067 * 4 3 2 28 28 H 1.08996 * 110.70685 * 277.27401 * 5 4 3 29 29 H 1.09004 * 110.70949 * 154.03159 * 5 4 3 30 30 H 1.08008 * 119.99745 * 2.27519 * 10 8 6 31 31 H 0.96999 * 120.00292 * 172.58165 * 12 11 10 32 32 H 0.97007 * 119.99525 * 352.30785 * 12 11 10 33 33 H 0.97000 * 120.00100 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9989 1.3803 0.0000 4 6 3.3047 1.3028 0.8297 5 6 2.9158 0.2824 1.9316 6 6 1.9973 -0.7055 1.1819 7 1 2.5674 -1.5800 0.8678 8 6 0.8610 -1.1290 2.0767 9 8 0.3287 -0.3173 2.8084 10 6 0.4179 -2.4586 2.0651 11 6 -0.6643 -2.8400 2.8579 12 7 -1.1885 -4.1144 2.7455 13 6 -1.2200 -1.9320 3.7679 14 1 -0.5761 -1.3018 4.3634 15 6 -2.6170 -1.8408 3.9063 16 7 -3.3972 -2.4739 3.0752 17 14 -3.3544 -0.8125 5.2805 18 1 -3.5601 0.5782 4.8024 19 1 -4.6585 -1.3938 5.6885 20 1 -2.4305 -0.8047 6.4431 21 1 -0.3633 0.5873 0.8432 22 1 -0.3633 0.4366 -0.9304 23 1 -0.3633 -1.0240 0.0870 24 1 2.2148 1.7038 -1.0183 25 1 1.2880 2.0596 0.4705 26 1 4.1301 0.9283 0.2244 27 1 3.5498 2.2723 1.2635 28 1 2.3742 0.7749 2.7392 29 1 3.7999 -0.2278 2.3140 30 1 0.9145 -3.1880 1.4422 31 1 -1.8681 -4.4161 3.3685 32 1 -0.8796 -4.7056 2.0411 33 1 -4.3605 -2.4107 3.1704 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238351699.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:23 Heat of formation + Delta-G solvation = -48.391445 kcal Electronic energy + Delta-G solvation = -15941.656421 eV Core-core repulsion = 13387.185850 eV Total energy + Delta-G solvation = -2554.470571 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.90006 -38.35245 -36.85212 -34.32347 -32.95756 -31.01379 -29.94017 -27.82018 -26.48711 -23.77922 -22.04105 -21.21427 -19.81321 -18.83251 -17.48356 -16.89874 -16.80614 -16.52075 -15.72063 -15.26094 -14.78082 -14.74576 -14.44973 -13.84711 -13.56185 -13.35940 -13.10773 -12.81859 -12.63676 -12.40582 -12.30053 -12.14918 -11.96136 -11.72940 -11.56399 -11.50541 -10.97390 -9.88827 -8.99704 -8.82950 -8.08419 -6.65738 1.06737 1.34416 1.46387 1.56784 2.19624 2.54954 3.12639 3.44891 3.59227 3.80148 3.87217 4.08820 4.37929 4.47364 4.57661 4.65694 4.69805 4.93358 4.97079 5.07791 5.08669 5.15783 5.21381 5.33982 5.41891 5.83334 6.01432 6.04427 6.10642 6.30052 6.48433 6.74174 7.35298 7.53817 7.98306 8.21757 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.034126 B = 0.008749 C = 0.008065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.293881 B = 3199.662528 C = 3470.770629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.514 5.514 3 C 0.033 3.967 4 C -0.113 4.113 5 C -0.131 4.131 6 C 0.031 3.969 7 H 0.087 0.913 8 C 0.364 3.636 9 O -0.573 6.573 10 C -0.537 4.537 11 C 0.392 3.608 12 N -0.837 5.837 13 C -0.461 4.461 14 H 0.081 0.919 15 C 0.046 3.954 16 N -0.821 5.821 17 Si 0.978 3.022 18 H -0.279 1.279 19 H -0.254 1.254 20 H -0.262 1.262 21 H 0.011 0.989 22 H 0.078 0.922 23 H 0.053 0.947 24 H 0.101 0.899 25 H 0.031 0.969 26 H 0.092 0.908 27 H 0.089 0.911 28 H 0.051 0.949 29 H 0.085 0.915 30 H 0.081 0.919 31 H 0.393 0.607 32 H 0.387 0.613 33 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.056 2.186 -2.584 6.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.239 5.239 3 C -0.094 4.094 4 C -0.151 4.151 5 C -0.170 4.170 6 C -0.078 4.078 7 H 0.105 0.895 8 C 0.260 3.740 9 O -0.465 6.465 10 C -0.564 4.564 11 C 0.277 3.723 12 N -0.370 5.370 13 C -0.495 4.495 14 H 0.099 0.901 15 C -0.171 4.171 16 N -0.449 5.449 17 Si 0.800 3.200 18 H -0.204 1.204 19 H -0.177 1.177 20 H -0.186 1.186 21 H 0.030 0.970 22 H 0.097 0.903 23 H 0.072 0.928 24 H 0.119 0.881 25 H 0.049 0.951 26 H 0.111 0.889 27 H 0.108 0.892 28 H 0.069 0.931 29 H 0.103 0.897 30 H 0.099 0.901 31 H 0.221 0.779 32 H 0.215 0.785 33 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 4.779 2.272 -2.776 5.976 hybrid contribution -1.001 0.171 0.970 1.404 sum 3.778 2.443 -1.805 4.848 Atomic orbital electron populations 1.22451 0.88534 1.01381 1.00016 1.63919 1.07527 1.15022 1.37443 1.23239 0.96079 0.88685 1.01396 1.22670 0.97078 0.99388 0.95960 1.22721 0.98775 0.97057 0.98398 1.22906 0.96523 0.98118 0.90293 0.89494 1.19913 0.83818 0.88722 0.81552 1.90437 1.57392 1.56347 1.42317 1.21104 1.14951 0.98351 1.22000 1.17800 0.85855 0.83595 0.85020 1.42552 1.45707 1.12711 1.36053 1.19708 0.91927 1.17855 1.19966 0.90111 1.26734 0.96969 0.95823 0.97618 1.69524 1.06611 1.36215 1.32585 0.85272 0.78138 0.78259 0.78371 1.20443 1.17726 1.18612 0.97024 0.90295 0.92774 0.88131 0.95079 0.88916 0.89245 0.93057 0.89669 0.90053 0.77873 0.78529 0.89616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 1.07 8.37 127.69 1.07 2.13 16 2 N -0.51 -19.95 5.44 -890.90 -4.85 -24.80 16 3 C 0.03 1.06 6.73 86.77 0.58 1.64 16 4 C -0.11 -3.11 7.08 31.98 0.23 -2.89 16 5 C -0.13 -4.65 6.42 31.78 0.20 -4.45 16 6 C 0.03 1.27 3.74 44.52 0.17 1.44 16 7 H 0.09 3.47 8.03 -2.38 -0.02 3.45 16 8 C 0.36 18.57 3.78 26.15 0.10 18.67 16 9 O -0.57 -33.02 11.80 -3.89 -0.05 -33.06 16 10 C -0.54 -27.77 8.92 23.03 0.21 -27.56 16 11 C 0.39 20.55 6.23 38.86 0.24 20.79 16 12 N -0.84 -36.54 8.33 -51.18 -0.43 -36.96 16 13 C -0.46 -25.47 7.11 23.31 0.17 -25.31 16 14 H 0.08 4.84 6.41 -2.91 -0.02 4.82 16 15 C 0.05 2.30 5.27 85.50 0.45 2.75 16 16 N -0.82 -40.69 12.13 21.95 0.27 -40.43 16 17 Si 0.98 40.19 29.57 68.60 2.03 42.22 16 18 H -0.28 -11.91 7.11 99.48 0.71 -11.21 16 19 H -0.25 -9.28 7.11 99.48 0.71 -8.57 16 20 H -0.26 -10.78 7.11 99.48 0.71 -10.07 16 21 H 0.01 0.55 6.56 -2.39 -0.02 0.54 16 22 H 0.08 2.85 8.14 -2.39 -0.02 2.83 16 23 H 0.05 2.59 6.67 -2.39 -0.02 2.57 16 24 H 0.10 2.61 8.14 -2.39 -0.02 2.59 16 25 H 0.03 1.06 7.70 -2.38 -0.02 1.05 16 26 H 0.09 2.15 8.14 -2.39 -0.02 2.14 16 27 H 0.09 2.08 8.14 -2.39 -0.02 2.07 16 28 H 0.05 2.12 7.04 -2.39 -0.02 2.10 16 29 H 0.08 2.63 8.14 -2.39 -0.02 2.61 16 30 H 0.08 3.95 8.05 -2.91 -0.02 3.92 16 31 H 0.39 16.61 8.01 -92.71 -0.74 15.87 16 32 H 0.39 14.72 8.83 -92.70 -0.82 13.90 16 33 H 0.29 13.14 8.29 -92.71 -0.77 12.38 16 Total: -1.00 -62.80 268.55 -0.05 -62.85 By element: Atomic # 1 Polarization: 43.41 SS G_CDS: -0.43 Total: 42.98 kcal Atomic # 6 Polarization: -16.20 SS G_CDS: 3.41 Total: -12.79 kcal Atomic # 7 Polarization: -97.18 SS G_CDS: -5.01 Total: -102.19 kcal Atomic # 8 Polarization: -33.02 SS G_CDS: -0.05 Total: -33.06 kcal Atomic # 14 Polarization: 40.19 SS G_CDS: 2.03 Total: 42.22 kcal Total: -62.80 -0.05 -62.85 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238351699.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.456 kcal (2) G-P(sol) polarization free energy of solvation -62.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds