Wall clock time and date at job start Mon Mar 30 2020 03:12:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.46966 * 2 1 4 4 C 1.53001 * 109.47181 * 239.99872 * 2 1 3 5 5 C 1.52996 * 109.47128 * 65.00037 * 4 2 1 6 6 C 1.50697 * 109.47565 * 180.02562 * 5 4 2 7 7 H 1.08006 * 119.99799 * 359.97438 * 6 5 4 8 8 C 1.37879 * 120.00408 * 180.02562 * 6 5 4 9 9 N 1.31517 * 119.99758 * 179.97438 * 8 6 5 10 10 Si 1.86796 * 119.99890 * 359.97438 * 8 6 5 11 11 H 1.48493 * 109.47278 * 90.00280 * 10 8 6 12 12 H 1.48499 * 109.47004 * 210.00141 * 10 8 6 13 13 H 1.48506 * 109.47205 * 330.00227 * 10 8 6 14 14 N 1.46500 * 109.47522 * 120.00025 * 2 1 3 15 15 C 1.34954 * 126.03181 * 34.99523 * 14 2 1 16 16 C 1.35320 * 107.74052 * 180.02562 * 15 14 2 17 17 C 1.50706 * 126.03704 * 179.97438 * 16 15 14 18 18 O 1.42906 * 109.46702 * 90.00225 * 17 16 15 19 19 C 1.39869 * 107.92397 * 0.26955 * 16 15 14 20 20 N 1.30839 * 108.19682 * 359.54839 * 19 16 15 21 21 H 1.08998 * 109.47239 * 60.00394 * 1 2 3 22 22 H 1.09000 * 109.46966 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47336 * 299.99626 * 1 2 3 24 24 H 1.09004 * 109.47077 * 185.00153 * 4 2 1 25 25 H 1.09001 * 109.47244 * 304.99883 * 4 2 1 26 26 H 1.09004 * 109.47236 * 300.00018 * 5 4 2 27 27 H 1.09001 * 109.47183 * 59.99810 * 5 4 2 28 28 H 0.97007 * 119.99584 * 179.97438 * 9 8 6 29 29 H 1.07994 * 126.13197 * 0.02562 * 15 14 2 30 30 H 1.09000 * 109.47318 * 209.99804 * 17 16 15 31 31 H 1.09000 * 109.47161 * 330.00435 * 17 16 15 32 32 H 0.96698 * 113.99410 * 179.97438 * 18 17 16 33 33 H 1.07997 * 125.90256 * 179.74170 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6353 0.0688 -2.4953 6 6 2.1370 -0.6418 -3.7258 7 1 2.6898 -1.5646 -3.6288 8 6 1.8914 -0.1135 -4.9755 9 7 2.3298 -0.7336 -6.0492 10 14 0.9361 1.4829 -5.1433 11 1 1.8794 2.6294 -5.1171 12 1 0.1932 1.4823 -6.4291 13 1 -0.0240 1.6060 -4.0170 14 7 2.0184 -0.6906 1.1961 15 6 1.4402 -1.7559 1.7895 16 6 2.1962 -2.0923 2.8602 17 6 1.9253 -3.2254 3.8161 18 8 2.5682 -4.4111 3.3437 19 6 3.2699 -1.1983 2.9269 20 7 3.1676 -0.3615 1.9264 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 3.1263 -0.7995 -1.2055 25 1 1.6054 -1.7198 -1.2951 26 1 0.5489 0.1471 -2.5390 27 1 2.0699 1.0674 -2.4494 28 1 2.1567 -0.3620 -6.9285 29 1 0.5361 -2.2512 1.4675 30 1 2.3134 -2.9698 4.8020 31 1 0.8507 -3.3964 3.8817 32 1 2.4365 -5.1826 3.9115 33 1 4.0504 -1.2005 3.6734 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238414820.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:01 Heat of formation + Delta-G solvation = 13.361937 kcal Electronic energy + Delta-G solvation = -14992.714811 eV Core-core repulsion = 12440.922067 eV Total energy + Delta-G solvation = -2551.792744 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.11397 -36.88227 -36.02044 -32.96403 -31.00673 -30.69081 -28.86218 -26.19647 -25.15600 -22.75484 -20.74451 -20.27095 -19.47298 -17.43694 -17.08220 -16.31575 -14.89940 -14.66561 -14.58874 -14.33398 -13.91738 -13.77684 -12.99567 -12.70506 -12.54916 -12.38512 -11.89129 -11.63604 -11.39983 -10.98614 -10.87532 -10.55340 -10.14706 -10.01172 -9.95904 -9.81621 -9.29219 -9.11295 -8.58392 -8.31947 -6.08406 -4.07414 2.08633 2.70613 2.83558 3.26933 3.34312 3.35321 4.40075 4.53201 4.73729 4.92399 5.08086 5.18174 5.21793 5.25060 5.28571 5.38857 5.57198 5.78704 5.86554 5.94565 6.12639 6.18440 6.33217 6.37939 6.71231 6.78941 7.15758 7.24306 7.30218 7.61665 7.72080 7.91417 8.48681 8.96321 9.52679 11.05073 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.044599 B = 0.005507 C = 0.005271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.666618 B = 5083.016988 C = 5310.957829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.149 3.851 3 H 0.100 0.900 4 C -0.111 4.111 5 C -0.009 4.009 6 C -0.522 4.522 7 H 0.072 0.928 8 C 0.067 3.933 9 N -0.902 5.902 10 Si 0.880 3.120 11 H -0.276 1.276 12 H -0.287 1.287 13 H -0.266 1.266 14 N -0.351 5.351 15 C 0.083 3.917 16 C -0.263 4.263 17 C 0.160 3.840 18 O -0.571 6.571 19 C 0.054 3.946 20 N -0.297 5.297 21 H 0.090 0.910 22 H 0.064 0.936 23 H 0.057 0.943 24 H 0.064 0.936 25 H 0.061 0.939 26 H 0.021 0.979 27 H 0.014 0.986 28 H 0.264 0.736 29 H 0.170 0.830 30 H 0.050 0.950 31 H 0.047 0.953 32 H 0.373 0.627 33 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.803 -1.879 19.179 19.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.049 3.951 3 H 0.118 0.882 4 C -0.149 4.149 5 C -0.047 4.047 6 C -0.560 4.560 7 H 0.090 0.910 8 C -0.134 4.134 9 N -0.540 5.540 10 Si 0.708 3.292 11 H -0.202 1.202 12 H -0.213 1.213 13 H -0.190 1.190 14 N -0.131 5.131 15 C -0.066 4.066 16 C -0.275 4.275 17 C 0.081 3.919 18 O -0.376 6.376 19 C -0.132 4.132 20 N -0.118 5.118 21 H 0.109 0.891 22 H 0.083 0.917 23 H 0.076 0.924 24 H 0.082 0.918 25 H 0.080 0.920 26 H 0.040 0.960 27 H 0.032 0.968 28 H 0.074 0.926 29 H 0.187 0.813 30 H 0.068 0.932 31 H 0.065 0.935 32 H 0.219 0.781 33 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -4.141 -0.351 17.766 18.246 hybrid contribution -0.941 -0.301 0.554 1.133 sum -5.082 -0.652 18.321 19.024 Atomic orbital electron populations 1.22224 0.93218 1.03238 1.03350 1.21718 0.94547 0.97388 0.81490 0.88220 1.21930 1.01306 0.99457 0.92219 1.19600 0.96645 0.95581 0.92887 1.21077 1.35851 1.09986 0.89126 0.91021 1.25026 0.95367 0.97211 0.95796 1.69918 1.46370 1.39674 0.98064 0.86774 0.80655 0.84214 0.77596 1.20211 1.21305 1.19031 1.49103 1.18409 1.23505 1.22124 1.22275 0.99715 0.90803 0.93825 1.19695 1.01086 1.03391 1.03302 1.20136 0.95234 0.82642 0.93842 1.86657 1.76974 1.20217 1.53757 1.23671 0.98373 0.93920 0.97217 1.77376 1.03215 1.24371 1.06823 0.89118 0.91680 0.92397 0.91771 0.92021 0.96035 0.96765 0.92648 0.81288 0.93229 0.93508 0.78078 0.80516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.19 8.59 37.16 0.32 -1.87 16 2 C 0.15 2.45 3.40 -67.93 -0.23 2.22 16 3 H 0.10 1.65 8.14 -51.93 -0.42 1.23 16 4 C -0.11 -2.21 4.95 -26.73 -0.13 -2.35 16 5 C -0.01 -0.21 3.80 -27.89 -0.11 -0.32 16 6 C -0.52 -14.88 9.66 -34.44 -0.33 -15.22 16 7 H 0.07 2.23 7.99 -52.48 -0.42 1.81 16 8 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 9 N -0.90 -27.86 13.96 55.43 0.77 -27.09 16 10 Si 0.88 21.35 27.47 -169.99 -4.67 16.69 16 11 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 12 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 13 H -0.27 -6.03 6.54 56.52 0.37 -5.66 16 14 N -0.35 -5.80 3.53 -54.86 -0.19 -5.99 16 15 C 0.08 1.20 10.50 -17.22 -0.18 1.02 16 16 C -0.26 -3.63 5.73 -105.05 -0.60 -4.23 16 17 C 0.16 1.65 7.53 36.01 0.27 1.92 16 18 O -0.57 -6.55 13.64 -35.23 -0.48 -7.03 16 19 C 0.05 0.79 11.96 -17.36 -0.21 0.58 16 20 N -0.30 -5.18 12.57 30.62 0.39 -4.79 16 21 H 0.09 1.26 6.56 -51.93 -0.34 0.92 16 22 H 0.06 0.81 7.16 -51.93 -0.37 0.44 16 23 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 24 H 0.06 1.40 8.14 -51.93 -0.42 0.98 16 25 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 26 H 0.02 0.48 5.62 -51.93 -0.29 0.18 16 27 H 0.01 0.32 7.57 -51.93 -0.39 -0.07 16 28 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 29 H 0.17 2.00 7.26 -52.49 -0.38 1.62 16 30 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 32 H 0.37 2.24 9.12 45.56 0.42 2.65 16 33 H 0.18 2.00 8.06 -52.49 -0.42 1.57 16 LS Contribution 280.01 15.07 4.22 4.22 Total: -1.00 -33.97 280.01 -5.17 -39.15 By element: Atomic # 1 Polarization: 5.14 SS G_CDS: -3.91 Total: 1.24 kcal Atomic # 6 Polarization: -15.08 SS G_CDS: -1.30 Total: -16.38 kcal Atomic # 7 Polarization: -38.84 SS G_CDS: 0.97 Total: -37.88 kcal Atomic # 8 Polarization: -6.55 SS G_CDS: -0.48 Total: -7.03 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -4.67 Total: 16.69 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -33.97 -5.17 -39.15 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238414820.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.509 kcal (2) G-P(sol) polarization free energy of solvation -33.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.147 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds