Wall clock time and date at job start Mon Mar 30 2020 03:12:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.46966 * 2 1 4 4 C 1.53001 * 109.47181 * 239.99872 * 2 1 3 5 5 C 1.52996 * 109.47128 * 65.00037 * 4 2 1 6 6 C 1.50697 * 109.47565 * 180.02562 * 5 4 2 7 7 H 1.08006 * 119.99799 * 359.97438 * 6 5 4 8 8 C 1.37879 * 120.00408 * 180.02562 * 6 5 4 9 9 N 1.31517 * 119.99758 * 179.97438 * 8 6 5 10 10 Si 1.86796 * 119.99890 * 359.97438 * 8 6 5 11 11 H 1.48493 * 109.47278 * 90.00280 * 10 8 6 12 12 H 1.48499 * 109.47004 * 210.00141 * 10 8 6 13 13 H 1.48506 * 109.47205 * 330.00227 * 10 8 6 14 14 N 1.46500 * 109.47522 * 120.00025 * 2 1 3 15 15 C 1.34954 * 126.03181 * 34.99523 * 14 2 1 16 16 C 1.35320 * 107.74052 * 180.02562 * 15 14 2 17 17 C 1.50706 * 126.03704 * 179.97438 * 16 15 14 18 18 O 1.42906 * 109.46702 * 90.00225 * 17 16 15 19 19 C 1.39869 * 107.92397 * 0.26955 * 16 15 14 20 20 N 1.30839 * 108.19682 * 359.54839 * 19 16 15 21 21 H 1.08998 * 109.47239 * 60.00394 * 1 2 3 22 22 H 1.09000 * 109.46966 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47336 * 299.99626 * 1 2 3 24 24 H 1.09004 * 109.47077 * 185.00153 * 4 2 1 25 25 H 1.09001 * 109.47244 * 304.99883 * 4 2 1 26 26 H 1.09004 * 109.47236 * 300.00018 * 5 4 2 27 27 H 1.09001 * 109.47183 * 59.99810 * 5 4 2 28 28 H 0.97007 * 119.99584 * 179.97438 * 9 8 6 29 29 H 1.07994 * 126.13197 * 0.02562 * 15 14 2 30 30 H 1.09000 * 109.47318 * 209.99804 * 17 16 15 31 31 H 1.09000 * 109.47161 * 330.00435 * 17 16 15 32 32 H 0.96698 * 113.99410 * 179.97438 * 18 17 16 33 33 H 1.07997 * 125.90256 * 179.74170 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6353 0.0688 -2.4953 6 6 2.1370 -0.6418 -3.7258 7 1 2.6898 -1.5646 -3.6288 8 6 1.8914 -0.1135 -4.9755 9 7 2.3298 -0.7336 -6.0492 10 14 0.9361 1.4829 -5.1433 11 1 1.8794 2.6294 -5.1171 12 1 0.1932 1.4823 -6.4291 13 1 -0.0240 1.6060 -4.0170 14 7 2.0184 -0.6906 1.1961 15 6 1.4402 -1.7559 1.7895 16 6 2.1962 -2.0923 2.8602 17 6 1.9253 -3.2254 3.8161 18 8 2.5682 -4.4111 3.3437 19 6 3.2699 -1.1983 2.9269 20 7 3.1676 -0.3615 1.9264 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 3.1263 -0.7995 -1.2055 25 1 1.6054 -1.7198 -1.2951 26 1 0.5489 0.1471 -2.5390 27 1 2.0699 1.0674 -2.4494 28 1 2.1567 -0.3620 -6.9285 29 1 0.5361 -2.2512 1.4675 30 1 2.3134 -2.9698 4.8020 31 1 0.8507 -3.3964 3.8817 32 1 2.4365 -5.1826 3.9115 33 1 4.0504 -1.2005 3.6734 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238414820.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:01 Heat of formation + Delta-G solvation = -12.196816 kcal Electronic energy + Delta-G solvation = -14993.823122 eV Core-core repulsion = 12440.922067 eV Total energy + Delta-G solvation = -2552.901054 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.23596 -37.92486 -37.22771 -34.95805 -32.64902 -31.76593 -30.21666 -27.56503 -26.46780 -24.15125 -22.36597 -21.39383 -20.76586 -19.05790 -18.21885 -17.64575 -16.36097 -16.18390 -15.86208 -15.45594 -15.20971 -14.84367 -14.75049 -14.23985 -13.90046 -13.49782 -13.25817 -12.93894 -12.77501 -12.52257 -12.31087 -11.91519 -11.82409 -11.66712 -11.52688 -11.37850 -10.78500 -10.77352 -10.37436 -9.44926 -8.31359 -6.37426 0.95938 1.37044 1.39044 1.50573 1.56289 1.77949 2.35485 3.04077 3.51750 3.86746 3.89393 3.90868 4.09938 4.12960 4.37716 4.39983 4.52170 4.61767 4.75271 4.79057 4.81425 4.93352 4.96751 5.11691 5.22005 5.35058 5.48536 5.61388 5.73254 6.11820 6.24940 6.70303 6.77822 7.09256 7.27094 8.85992 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.044599 B = 0.005507 C = 0.005271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.666618 B = 5083.016988 C = 5310.957829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.157 3.843 3 H 0.097 0.903 4 C -0.099 4.099 5 C -0.004 4.004 6 C -0.539 4.539 7 H 0.022 0.978 8 C 0.003 3.997 9 N -0.954 5.954 10 Si 0.955 3.045 11 H -0.269 1.269 12 H -0.284 1.284 13 H -0.232 1.232 14 N -0.367 5.367 15 C 0.073 3.927 16 C -0.269 4.269 17 C 0.160 3.840 18 O -0.599 6.599 19 C 0.052 3.948 20 N -0.343 5.343 21 H 0.090 0.910 22 H 0.075 0.925 23 H 0.079 0.921 24 H 0.032 0.968 25 H 0.054 0.946 26 H 0.044 0.956 27 H 0.021 0.979 28 H 0.267 0.733 29 H 0.194 0.806 30 H 0.072 0.928 31 H 0.069 0.931 32 H 0.396 0.604 33 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.815 -0.943 21.218 22.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.056 3.944 3 H 0.115 0.885 4 C -0.138 4.138 5 C -0.041 4.041 6 C -0.577 4.577 7 H 0.040 0.960 8 C -0.194 4.194 9 N -0.595 5.595 10 Si 0.777 3.223 11 H -0.195 1.195 12 H -0.210 1.210 13 H -0.155 1.155 14 N -0.148 5.148 15 C -0.074 4.074 16 C -0.281 4.281 17 C 0.082 3.918 18 O -0.408 6.408 19 C -0.134 4.134 20 N -0.164 5.164 21 H 0.108 0.892 22 H 0.094 0.906 23 H 0.098 0.902 24 H 0.050 0.950 25 H 0.073 0.927 26 H 0.062 0.938 27 H 0.040 0.960 28 H 0.076 0.924 29 H 0.211 0.789 30 H 0.090 0.910 31 H 0.087 0.913 32 H 0.246 0.754 33 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -6.156 0.555 19.854 20.794 hybrid contribution -0.200 -0.753 -0.031 0.780 sum -6.356 -0.198 19.823 20.818 Atomic orbital electron populations 1.22192 0.90433 1.04332 1.04356 1.21501 0.96531 0.96395 0.79986 0.88532 1.21702 0.99303 0.99332 0.93465 1.19516 0.97608 0.95416 0.91594 1.21446 1.35497 1.08862 0.91882 0.96000 1.26105 0.96543 1.01685 0.95067 1.70092 1.48317 1.42143 0.98902 0.85590 0.79570 0.78384 0.78715 1.19467 1.20966 1.15522 1.49051 1.18786 1.24558 1.22363 1.22826 1.00568 0.90177 0.93850 1.20221 1.00262 1.04054 1.03520 1.20260 0.96620 0.81306 0.93594 1.86575 1.77445 1.21525 1.55278 1.24246 0.99057 0.93257 0.96821 1.77316 1.04376 1.26326 1.08353 0.89165 0.90593 0.90212 0.94957 0.92674 0.93827 0.96046 0.92411 0.78915 0.90960 0.91334 0.75433 0.77934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.72 8.59 71.98 0.62 -3.10 16 2 C 0.16 4.98 3.40 44.99 0.15 5.13 16 3 H 0.10 3.09 8.14 -2.39 -0.02 3.07 16 4 C -0.10 -4.02 4.95 30.59 0.15 -3.87 16 5 C 0.00 -0.16 3.80 29.85 0.11 -0.05 16 6 C -0.54 -31.59 9.66 25.60 0.25 -31.34 16 7 H 0.02 1.44 7.99 -2.91 -0.02 1.41 16 8 C 0.00 0.15 5.47 84.65 0.46 0.61 16 9 N -0.95 -60.72 13.96 21.45 0.30 -60.42 16 10 Si 0.96 43.26 27.47 68.60 1.88 45.15 16 11 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 12 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 13 H -0.23 -9.23 6.54 99.48 0.65 -8.58 16 14 N -0.37 -11.76 3.53 -327.49 -1.15 -12.91 16 15 C 0.07 1.99 10.50 83.54 0.88 2.86 16 16 C -0.27 -6.86 5.73 -20.14 -0.12 -6.98 16 17 C 0.16 2.82 7.53 71.24 0.54 3.35 16 18 O -0.60 -12.32 13.64 -148.98 -2.03 -14.35 16 19 C 0.05 1.44 11.96 85.24 1.02 2.46 16 20 N -0.34 -11.79 12.57 -57.02 -0.72 -12.51 16 21 H 0.09 2.19 6.56 -2.39 -0.02 2.17 16 22 H 0.08 1.65 7.16 -2.39 -0.02 1.63 16 23 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 24 H 0.03 1.47 8.14 -2.39 -0.02 1.45 16 25 H 0.05 2.25 8.14 -2.39 -0.02 2.23 16 26 H 0.04 1.81 5.62 -2.39 -0.01 1.80 16 27 H 0.02 0.94 7.57 -2.39 -0.02 0.93 16 28 H 0.27 15.76 8.31 -92.70 -0.77 14.99 16 29 H 0.19 4.04 7.26 -2.91 -0.02 4.02 16 30 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.40 3.74 9.12 -74.06 -0.68 3.06 16 33 H 0.20 4.21 8.06 -2.91 -0.02 4.18 16 Total: -1.00 -76.03 280.01 2.71 -73.32 By element: Atomic # 1 Polarization: 12.27 SS G_CDS: 0.37 Total: 12.64 kcal Atomic # 6 Polarization: -34.97 SS G_CDS: 4.06 Total: -30.91 kcal Atomic # 7 Polarization: -84.27 SS G_CDS: -1.57 Total: -85.84 kcal Atomic # 8 Polarization: -12.32 SS G_CDS: -2.03 Total: -14.35 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 1.88 Total: 45.15 kcal Total: -76.03 2.71 -73.32 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238414820.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.119 kcal (2) G-P(sol) polarization free energy of solvation -76.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds