Wall clock time and date at job start Mon Mar 30 2020 03:09:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 110.48611 * 2 1 4 4 N 1.47045 * 110.54899 * 122.70094 * 2 1 3 5 5 C 1.33954 * 109.17986 * 118.73825 * 4 2 1 6 6 O 1.21584 * 123.04230 * 179.73022 * 5 4 2 7 7 N 1.33952 * 113.91225 * 0.02562 * 5 4 2 8 8 C 1.47051 * 109.18173 * 0.02562 * 7 5 4 9 9 H 1.08993 * 110.67734 * 118.65056 * 8 7 5 10 10 C 1.50701 * 110.54546 * 241.40778 * 8 7 5 11 11 C 1.31001 * 119.99750 * 239.43832 * 10 8 7 12 12 C 1.50699 * 120.00323 * 179.97438 * 11 10 8 13 13 C 1.53000 * 109.47314 * 125.00041 * 12 11 10 14 14 C 1.50693 * 109.47378 * 180.02562 * 13 12 11 15 15 H 1.08001 * 120.00090 * 359.97438 * 14 13 12 16 16 C 1.37878 * 120.00065 * 180.02562 * 14 13 12 17 17 N 1.31512 * 119.99890 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 120.00039 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.46934 * 359.97438 * 18 16 14 20 20 H 1.48494 * 109.47215 * 119.99896 * 18 16 14 21 21 H 1.48508 * 109.47166 * 239.99963 * 18 16 14 22 22 H 1.08998 * 109.47141 * 298.75199 * 1 2 3 23 23 H 1.09001 * 109.47159 * 58.74953 * 1 2 3 24 24 H 1.09001 * 109.46913 * 178.74890 * 1 2 3 25 25 H 0.97002 * 125.41556 * 298.74035 * 4 2 1 26 26 H 0.97001 * 125.40339 * 179.97438 * 7 5 4 27 27 H 1.07995 * 120.00423 * 59.43656 * 10 8 7 28 28 H 1.08005 * 119.99662 * 0.02562 * 11 10 8 29 29 H 1.08991 * 109.47276 * 245.00522 * 12 11 10 30 30 H 1.09005 * 109.46774 * 5.00250 * 12 11 10 31 31 H 1.09004 * 109.47091 * 300.00959 * 13 12 11 32 32 H 1.09000 * 109.46725 * 60.00033 * 13 12 11 33 33 H 0.97004 * 120.00173 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9115 1.0211 0.0000 4 7 2.0462 -0.7439 1.1587 5 6 2.7702 -1.7847 0.7264 6 8 3.3197 -2.5675 1.4772 7 7 2.8393 -1.8813 -0.6078 8 6 2.0753 -0.7798 -1.2122 9 1 2.7254 -0.1458 -1.8150 10 6 0.9417 -1.3179 -2.0468 11 6 0.8775 -1.0355 -3.3244 12 6 -0.2557 -1.5740 -4.1592 13 6 -0.9653 -0.4160 -4.8638 14 6 -2.0988 -0.9545 -5.6980 15 1 -2.2934 -2.0165 -5.7236 16 6 -2.8868 -0.0914 -6.4296 17 7 -2.6495 1.2017 -6.3989 18 14 -4.2915 -0.7590 -7.4643 19 1 -4.3472 -2.2367 -7.3290 20 1 -5.5727 -0.1701 -6.9986 21 1 -4.0709 -0.4008 -8.8886 22 1 -0.3633 0.4943 0.9009 23 1 -0.3633 0.5331 -0.8786 24 1 -0.3633 -1.0274 -0.0224 25 1 1.8875 -0.5170 2.0883 26 1 3.3180 -2.5683 -1.0975 27 1 0.1823 -1.9364 -1.5917 28 1 1.6372 -0.4173 -3.7796 29 1 0.1383 -2.2657 -4.9037 30 1 -0.9639 -2.0969 -3.5163 31 1 -1.3592 0.2757 -4.1191 32 1 -0.2570 0.1068 -5.5065 33 1 -3.2037 1.8089 -6.9138 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238467238.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:36 Heat of formation + Delta-G solvation = -20.739301 kcal Electronic energy + Delta-G solvation = -14874.246926 eV Core-core repulsion = 12320.975442 eV Total energy + Delta-G solvation = -2553.271484 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.15489 -37.11050 -35.18356 -33.42959 -32.78074 -31.12711 -29.17197 -26.23422 -24.48344 -21.99434 -21.76701 -20.39982 -19.30242 -17.83007 -16.35556 -16.25453 -15.90776 -14.75348 -14.52547 -14.39601 -14.18883 -13.93848 -13.11439 -12.68720 -12.44673 -12.00870 -11.93727 -11.51391 -11.32727 -11.01988 -10.79447 -10.58401 -10.29000 -10.06069 -9.71444 -9.43563 -9.17218 -8.87499 -8.60655 -8.39894 -6.05796 -4.08425 2.32402 3.00127 3.16061 3.27497 3.35461 3.39431 3.98175 4.36541 4.41758 4.71101 4.92501 5.18004 5.30427 5.33267 5.51869 5.59860 5.74629 5.87215 6.09705 6.22292 6.31069 6.55266 6.74730 6.95744 7.04456 7.11281 7.24486 7.39867 7.60641 7.74287 7.93732 8.35569 8.63088 8.98747 9.56282 11.05379 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.059949 B = 0.004565 C = 0.004446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 466.950414 B = 6132.791693 C = 6296.490649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.125 3.875 3 H 0.091 0.909 4 N -0.738 5.738 5 C 0.701 3.299 6 O -0.601 6.601 7 N -0.732 5.732 8 C 0.161 3.839 9 H 0.092 0.908 10 C -0.214 4.214 11 C -0.093 4.093 12 C -0.094 4.094 13 C 0.026 3.974 14 C -0.522 4.522 15 H 0.056 0.944 16 C 0.057 3.943 17 N -0.895 5.895 18 Si 0.891 3.109 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.284 1.284 22 H 0.058 0.942 23 H 0.082 0.918 24 H 0.066 0.934 25 H 0.426 0.574 26 H 0.427 0.573 27 H 0.114 0.886 28 H 0.105 0.895 29 H 0.063 0.937 30 H 0.055 0.945 31 H 0.017 0.983 32 H 0.017 0.983 33 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.806 -0.549 10.472 13.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.019 3.981 3 H 0.108 0.892 4 N -0.401 5.401 5 C 0.400 3.600 6 O -0.480 6.480 7 N -0.393 5.393 8 C 0.056 3.944 9 H 0.110 0.890 10 C -0.233 4.233 11 C -0.113 4.113 12 C -0.131 4.131 13 C -0.011 4.011 14 C -0.561 4.561 15 H 0.074 0.926 16 C -0.144 4.144 17 N -0.534 5.534 18 Si 0.719 3.281 19 H -0.197 1.197 20 H -0.210 1.210 21 H -0.210 1.210 22 H 0.077 0.923 23 H 0.101 0.899 24 H 0.085 0.915 25 H 0.267 0.733 26 H 0.269 0.731 27 H 0.132 0.868 28 H 0.123 0.877 29 H 0.081 0.919 30 H 0.073 0.927 31 H 0.036 0.964 32 H 0.035 0.965 33 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 8.024 -0.762 10.777 13.458 hybrid contribution -0.808 -0.293 -0.561 1.027 sum 7.216 -1.055 10.216 12.552 Atomic orbital electron populations 1.22187 0.93213 1.03404 1.02928 1.21980 0.95887 0.96130 0.84082 0.89156 1.45282 1.55649 1.30071 1.09054 1.15964 0.79408 0.81567 0.83094 1.90965 1.52950 1.46276 1.57809 1.45299 1.56065 1.32343 1.05550 1.20969 0.92001 0.87646 0.93799 0.89013 1.22738 0.99696 1.05700 0.95189 1.23352 0.97767 0.95481 0.94654 1.20938 0.94168 1.00202 0.97777 1.19054 0.94731 0.92383 0.94917 1.21298 1.14053 0.93487 1.27234 0.92610 1.25015 0.97671 0.94852 0.96837 1.69967 1.39650 1.02052 1.41761 0.86550 0.82235 0.79175 0.80136 1.19727 1.20988 1.20988 0.92317 0.89919 0.91533 0.73329 0.73132 0.86823 0.87730 0.91885 0.92654 0.96424 0.96465 0.93018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.60 8.43 37.16 0.31 -1.29 16 2 C 0.12 1.22 4.37 -67.05 -0.29 0.92 16 3 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 4 N -0.74 -7.98 6.03 -58.20 -0.35 -8.33 16 5 C 0.70 9.82 8.92 -88.39 -0.79 9.03 16 6 O -0.60 -10.84 18.05 5.29 0.10 -10.75 16 7 N -0.73 -8.65 6.01 -59.33 -0.36 -9.01 16 8 C 0.16 1.75 4.10 -68.20 -0.28 1.47 16 9 H 0.09 0.88 7.85 -51.93 -0.41 0.47 16 10 C -0.21 -2.75 6.92 -36.03 -0.25 -3.00 16 11 C -0.09 -1.39 9.13 -36.03 -0.33 -1.72 16 12 C -0.09 -1.77 5.60 -27.88 -0.16 -1.93 16 13 C 0.03 0.64 4.95 -27.89 -0.14 0.50 16 14 C -0.52 -14.28 9.11 -34.44 -0.31 -14.60 16 15 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 16 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 17 N -0.89 -26.11 13.29 55.43 0.74 -25.38 16 18 Si 0.89 21.12 29.54 -169.99 -5.02 16.10 16 19 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 20 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 21 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 22 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 23 H 0.08 0.91 7.77 -51.93 -0.40 0.51 16 24 H 0.07 0.75 6.68 -51.93 -0.35 0.40 16 25 H 0.43 3.81 8.96 -40.82 -0.37 3.44 16 26 H 0.43 4.54 8.96 -40.82 -0.37 4.18 16 27 H 0.11 1.56 6.60 -52.49 -0.35 1.21 16 28 H 0.10 1.44 7.87 -52.48 -0.41 1.03 16 29 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 30 H 0.05 1.04 7.79 -51.93 -0.40 0.64 16 31 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 280.47 15.07 4.23 4.23 Total: -1.00 -32.03 280.47 -7.71 -39.74 By element: Atomic # 1 Polarization: 7.21 SS G_CDS: -4.71 Total: 2.50 kcal Atomic # 6 Polarization: -6.78 SS G_CDS: -2.33 Total: -9.11 kcal Atomic # 7 Polarization: -42.75 SS G_CDS: 0.03 Total: -42.72 kcal Atomic # 8 Polarization: -10.84 SS G_CDS: 0.10 Total: -10.75 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -32.03 -7.71 -39.74 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238467238.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.005 kcal (2) G-P(sol) polarization free energy of solvation -32.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds