Wall clock time and date at job start Mon Mar 30 2020 03:09:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 110.48611 * 2 1 4 4 N 1.47045 * 110.54899 * 122.70094 * 2 1 3 5 5 C 1.33954 * 109.17986 * 118.73825 * 4 2 1 6 6 O 1.21584 * 123.04230 * 179.73022 * 5 4 2 7 7 N 1.33952 * 113.91225 * 0.02562 * 5 4 2 8 8 C 1.47051 * 109.18173 * 0.02562 * 7 5 4 9 9 H 1.08993 * 110.67734 * 118.65056 * 8 7 5 10 10 C 1.50701 * 110.54546 * 241.40778 * 8 7 5 11 11 C 1.31001 * 119.99750 * 239.43832 * 10 8 7 12 12 C 1.50699 * 120.00323 * 179.97438 * 11 10 8 13 13 C 1.53000 * 109.47314 * 125.00041 * 12 11 10 14 14 C 1.50693 * 109.47378 * 180.02562 * 13 12 11 15 15 H 1.08001 * 120.00090 * 359.97438 * 14 13 12 16 16 C 1.37878 * 120.00065 * 180.02562 * 14 13 12 17 17 N 1.31512 * 119.99890 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 120.00039 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.46934 * 359.97438 * 18 16 14 20 20 H 1.48494 * 109.47215 * 119.99896 * 18 16 14 21 21 H 1.48508 * 109.47166 * 239.99963 * 18 16 14 22 22 H 1.08998 * 109.47141 * 298.75199 * 1 2 3 23 23 H 1.09001 * 109.47159 * 58.74953 * 1 2 3 24 24 H 1.09001 * 109.46913 * 178.74890 * 1 2 3 25 25 H 0.97002 * 125.41556 * 298.74035 * 4 2 1 26 26 H 0.97001 * 125.40339 * 179.97438 * 7 5 4 27 27 H 1.07995 * 120.00423 * 59.43656 * 10 8 7 28 28 H 1.08005 * 119.99662 * 0.02562 * 11 10 8 29 29 H 1.08991 * 109.47276 * 245.00522 * 12 11 10 30 30 H 1.09005 * 109.46774 * 5.00250 * 12 11 10 31 31 H 1.09004 * 109.47091 * 300.00959 * 13 12 11 32 32 H 1.09000 * 109.46725 * 60.00033 * 13 12 11 33 33 H 0.97004 * 120.00173 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9115 1.0211 0.0000 4 7 2.0462 -0.7439 1.1587 5 6 2.7702 -1.7847 0.7264 6 8 3.3197 -2.5675 1.4772 7 7 2.8393 -1.8813 -0.6078 8 6 2.0753 -0.7798 -1.2122 9 1 2.7254 -0.1458 -1.8150 10 6 0.9417 -1.3179 -2.0468 11 6 0.8775 -1.0355 -3.3244 12 6 -0.2557 -1.5740 -4.1592 13 6 -0.9653 -0.4160 -4.8638 14 6 -2.0988 -0.9545 -5.6980 15 1 -2.2934 -2.0165 -5.7236 16 6 -2.8868 -0.0914 -6.4296 17 7 -2.6495 1.2017 -6.3989 18 14 -4.2915 -0.7590 -7.4643 19 1 -4.3472 -2.2367 -7.3290 20 1 -5.5727 -0.1701 -6.9986 21 1 -4.0709 -0.4008 -8.8886 22 1 -0.3633 0.4943 0.9009 23 1 -0.3633 0.5331 -0.8786 24 1 -0.3633 -1.0274 -0.0224 25 1 1.8875 -0.5170 2.0883 26 1 3.3180 -2.5683 -1.0975 27 1 0.1823 -1.9364 -1.5917 28 1 1.6372 -0.4173 -3.7796 29 1 0.1383 -2.2657 -4.9037 30 1 -0.9639 -2.0969 -3.5163 31 1 -1.3592 0.2757 -4.1191 32 1 -0.2570 0.1068 -5.5065 33 1 -3.2037 1.8089 -6.9138 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238467238.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:36 Heat of formation + Delta-G solvation = -43.924073 kcal Electronic energy + Delta-G solvation = -14875.252293 eV Core-core repulsion = 12320.975442 eV Total energy + Delta-G solvation = -2554.276851 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.13800 -38.25564 -36.63524 -34.89261 -34.11604 -32.48096 -30.51552 -27.61356 -25.92812 -23.39264 -22.75330 -21.80780 -20.41890 -18.86903 -18.39808 -17.24462 -16.95300 -16.48899 -15.75567 -15.44609 -15.36952 -15.16139 -14.39972 -14.37395 -13.64826 -13.55653 -13.08398 -12.91983 -12.73281 -12.45950 -12.41453 -11.95781 -11.81361 -11.57627 -11.39125 -11.12994 -10.54137 -10.52889 -9.90692 -9.77004 -8.18087 -6.28282 1.20904 1.41111 1.42493 1.54672 2.05392 2.09424 2.42960 3.08623 3.15611 3.48999 3.75519 4.03427 4.27702 4.32663 4.57041 4.65008 4.73183 4.85031 4.93312 5.01945 5.05638 5.21182 5.38271 5.54092 5.68678 5.72342 5.89415 5.99808 6.03338 6.28740 6.35045 6.42489 6.89244 7.41022 7.61819 8.93367 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.059949 B = 0.004565 C = 0.004446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 466.950414 B = 6132.791693 C = 6296.490649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.128 3.872 3 H 0.120 0.880 4 N -0.726 5.726 5 C 0.693 3.307 6 O -0.646 6.646 7 N -0.725 5.725 8 C 0.160 3.840 9 H 0.115 0.885 10 C -0.182 4.182 11 C -0.112 4.112 12 C -0.081 4.081 13 C 0.030 3.970 14 C -0.544 4.544 15 H 0.057 0.943 16 C 0.003 3.997 17 N -0.931 5.931 18 Si 0.959 3.041 19 H -0.264 1.264 20 H -0.279 1.279 21 H -0.279 1.279 22 H 0.076 0.924 23 H 0.072 0.928 24 H 0.051 0.949 25 H 0.435 0.565 26 H 0.432 0.568 27 H 0.106 0.894 28 H 0.119 0.881 29 H 0.062 0.938 30 H 0.052 0.948 31 H -0.004 1.004 32 H -0.004 1.004 33 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.824 -0.479 10.759 13.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.023 3.977 3 H 0.138 0.862 4 N -0.388 5.388 5 C 0.392 3.608 6 O -0.529 6.529 7 N -0.385 5.385 8 C 0.055 3.945 9 H 0.133 0.867 10 C -0.202 4.202 11 C -0.131 4.131 12 C -0.119 4.119 13 C -0.007 4.007 14 C -0.582 4.582 15 H 0.075 0.925 16 C -0.195 4.195 17 N -0.571 5.571 18 Si 0.784 3.216 19 H -0.188 1.188 20 H -0.204 1.204 21 H -0.204 1.204 22 H 0.095 0.905 23 H 0.091 0.909 24 H 0.070 0.930 25 H 0.278 0.722 26 H 0.274 0.726 27 H 0.124 0.876 28 H 0.137 0.863 29 H 0.080 0.920 30 H 0.071 0.929 31 H 0.015 0.985 32 H 0.015 0.985 33 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 8.031 -0.679 11.057 13.683 hybrid contribution -0.828 -0.303 -0.610 1.073 sum 7.203 -0.982 10.447 12.727 Atomic orbital electron populations 1.22154 0.93453 1.02547 1.03420 1.22117 0.95595 0.97120 0.82887 0.86213 1.45246 1.54519 1.29110 1.09938 1.16198 0.79489 0.81737 0.83383 1.90932 1.54945 1.48063 1.58951 1.45279 1.55660 1.32632 1.04978 1.21114 0.91508 0.87583 0.94262 0.86693 1.22777 0.99426 1.03512 0.94436 1.23062 0.97544 0.97563 0.94930 1.20673 0.95147 0.98142 0.97896 1.18940 0.94002 0.93686 0.94088 1.21771 1.15040 0.93733 1.27698 0.92471 1.25895 1.00373 0.95102 0.98137 1.70080 1.40935 1.03310 1.42775 0.85484 0.78863 0.78855 0.78362 1.18834 1.20446 1.20436 0.90529 0.90873 0.92971 0.72248 0.72575 0.87596 0.86278 0.92003 0.92894 0.98547 0.98536 0.92800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.83 8.43 71.98 0.61 -2.22 16 2 C 0.13 2.11 4.37 45.26 0.20 2.31 16 3 H 0.12 1.42 8.14 -2.39 -0.02 1.40 16 4 N -0.73 -14.02 6.03 -456.77 -2.75 -16.77 16 5 C 0.69 18.34 8.92 179.57 1.60 19.94 16 6 O -0.65 -22.94 18.05 -3.98 -0.07 -23.01 16 7 N -0.73 -15.69 6.01 -460.34 -2.77 -18.46 16 8 C 0.16 3.03 4.10 44.52 0.18 3.22 16 9 H 0.12 1.78 7.85 -2.39 -0.02 1.76 16 10 C -0.18 -4.36 6.92 25.65 0.18 -4.18 16 11 C -0.11 -3.19 9.13 25.65 0.23 -2.96 16 12 C -0.08 -3.06 5.60 29.85 0.17 -2.90 16 13 C 0.03 1.48 4.95 29.85 0.15 1.63 16 14 C -0.54 -30.01 9.11 25.60 0.23 -29.78 16 15 H 0.06 3.05 7.74 -2.91 -0.02 3.03 16 16 C 0.00 0.16 5.46 84.66 0.46 0.62 16 17 N -0.93 -54.87 13.29 21.45 0.28 -54.59 16 18 Si 0.96 43.21 29.54 68.60 2.03 45.23 16 19 H -0.26 -11.42 7.11 99.48 0.71 -10.72 16 20 H -0.28 -12.25 7.11 99.48 0.71 -11.55 16 21 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 22 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 23 H 0.07 1.49 7.77 -2.39 -0.02 1.47 16 24 H 0.05 1.09 6.68 -2.39 -0.02 1.07 16 25 H 0.43 6.80 8.96 -92.71 -0.83 5.97 16 26 H 0.43 8.45 8.96 -92.71 -0.83 7.62 16 27 H 0.11 2.75 6.60 -2.91 -0.02 2.73 16 28 H 0.12 3.07 7.87 -2.91 -0.02 3.05 16 29 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 30 H 0.05 1.98 7.79 -2.38 -0.02 1.96 16 31 H 0.00 -0.21 8.14 -2.38 -0.02 -0.23 16 32 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 16 33 H 0.26 14.56 8.31 -92.71 -0.77 13.79 16 Total: -1.00 -69.11 280.47 0.18 -68.93 By element: Atomic # 1 Polarization: 13.52 SS G_CDS: -0.55 Total: 12.98 kcal Atomic # 6 Polarization: -18.33 SS G_CDS: 4.01 Total: -14.32 kcal Atomic # 7 Polarization: -84.58 SS G_CDS: -5.24 Total: -89.81 kcal Atomic # 8 Polarization: -22.94 SS G_CDS: -0.07 Total: -23.01 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.23 kcal Total: -69.11 0.18 -68.93 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238467238.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.009 kcal (2) G-P(sol) polarization free energy of solvation -69.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds