Wall clock time and date at job start Mon Mar 30 2020 03:09:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09003 * 110.60198 * 2 1 4 4 N 1.47385 * 110.58796 * 237.05273 * 2 1 3 5 5 C 1.33957 * 109.20742 * 241.35401 * 4 2 1 6 6 O 1.21592 * 123.04060 * 180.02562 * 5 4 2 7 7 N 1.33943 * 113.91613 * 0.08253 * 5 4 2 8 8 C 1.47056 * 109.18020 * 359.97438 * 7 5 4 9 9 H 1.09004 * 110.54462 * 241.26407 * 8 7 5 10 10 C 1.52993 * 110.54862 * 118.59699 * 8 7 5 11 11 C 1.50696 * 109.47499 * 68.40266 * 10 8 7 12 12 C 1.30994 * 120.00334 * 125.00296 * 11 10 8 13 13 C 1.50706 * 120.00329 * 179.97438 * 12 11 10 14 14 C 1.50698 * 109.47294 * 124.99247 * 13 12 11 15 15 H 1.08005 * 119.99819 * 0.02562 * 14 13 12 16 16 C 1.37875 * 120.00046 * 179.97438 * 14 13 12 17 17 N 1.31511 * 120.00192 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 119.99979 * 180.02562 * 16 14 13 19 19 H 1.48506 * 109.47297 * 180.02562 * 18 16 14 20 20 H 1.48503 * 109.47261 * 60.00310 * 18 16 14 21 21 H 1.48500 * 109.47454 * 300.00304 * 18 16 14 22 22 H 1.09000 * 109.46604 * 297.22007 * 1 2 3 23 23 H 1.08995 * 109.47186 * 57.22107 * 1 2 3 24 24 H 1.08998 * 109.47107 * 177.22657 * 1 2 3 25 25 H 0.97000 * 125.38437 * 61.43943 * 4 2 1 26 26 H 0.96998 * 125.40912 * 179.97438 * 7 5 4 27 27 H 1.09002 * 109.47331 * 308.39960 * 10 8 7 28 28 H 1.09004 * 109.46972 * 188.40494 * 10 8 7 29 29 H 1.08001 * 119.99962 * 304.99696 * 11 10 8 30 30 H 1.07995 * 120.00160 * 359.97438 * 12 11 10 31 31 H 1.08998 * 109.46460 * 4.99808 * 13 12 11 32 32 H 1.08993 * 109.46894 * 244.99435 * 13 12 11 33 33 H 0.97001 * 119.99934 * 359.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9136 1.0203 0.0000 4 7 2.0483 -0.7504 -1.1578 5 6 2.7710 -1.7904 -0.7213 6 8 3.3170 -2.5787 -1.4689 7 7 2.8367 -1.8840 0.6132 8 6 2.0714 -0.7809 1.2132 9 1 2.7219 -0.1480 1.8169 10 6 0.9183 -1.3249 2.0589 11 6 1.4722 -2.0201 3.2757 12 6 1.0765 -1.6615 4.4719 13 6 1.6300 -2.3572 5.6888 14 6 2.2212 -1.3359 6.6260 15 1 2.1981 -0.2877 6.3666 16 6 2.7906 -1.7394 7.8151 17 7 2.8183 -3.0156 8.1312 18 14 3.5228 -0.4732 8.9770 19 1 4.0683 -1.1588 10.1761 20 1 2.4681 0.4863 9.3919 21 1 4.6147 0.2593 8.2867 22 1 -0.3632 0.4701 0.9139 23 1 -0.3633 0.5563 -0.8640 24 1 -0.3633 -1.0264 -0.0497 25 1 1.8919 -0.5258 -2.0884 26 1 3.3133 -2.5704 1.1057 27 1 0.3375 -2.0335 1.4684 28 1 0.2769 -0.5009 2.3716 29 1 2.1953 -2.8142 3.1617 30 1 0.3537 -0.8673 4.5861 31 1 2.4040 -3.0615 5.3840 32 1 0.8287 -2.8947 6.1958 33 1 2.4378 -3.6731 7.5280 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238475896.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:38 Heat of formation + Delta-G solvation = -23.405637 kcal Electronic energy + Delta-G solvation = -14961.791234 eV Core-core repulsion = 12408.404129 eV Total energy + Delta-G solvation = -2553.387105 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.20842 -37.14876 -35.25083 -33.53622 -32.80883 -31.37617 -28.73834 -26.19739 -24.45613 -22.45040 -21.78360 -20.43999 -18.86373 -17.96573 -16.85229 -16.18063 -15.99328 -14.76594 -14.73443 -14.43727 -13.84683 -13.58762 -13.23890 -12.96183 -12.64888 -12.50335 -12.01299 -11.55635 -11.40263 -11.07507 -10.97192 -10.60897 -10.18106 -10.16558 -9.81273 -9.46942 -9.08190 -8.89221 -8.42123 -8.03209 -6.41627 -4.12335 2.81278 2.94834 3.18838 3.40935 3.42382 3.61348 3.94366 4.18329 4.51147 4.66886 4.81313 5.09449 5.19188 5.35133 5.38097 5.49120 5.61079 5.70321 5.76949 5.86976 6.02461 6.13257 6.61988 6.95746 7.06625 7.13888 7.20511 7.36943 7.41589 7.70248 8.13525 8.38892 8.64309 8.81089 9.59713 10.98184 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.041335 B = 0.004977 C = 0.004843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 677.227704 B = 5624.775311 C = 5780.307359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.121 3.879 3 H 0.091 0.909 4 N -0.740 5.740 5 C 0.700 3.300 6 O -0.599 6.599 7 N -0.729 5.729 8 C 0.128 3.872 9 H 0.095 0.905 10 C -0.087 4.087 11 C -0.225 4.225 12 C -0.084 4.084 13 C 0.022 3.978 14 C -0.598 4.598 15 H 0.050 0.950 16 C 0.015 3.985 17 N -0.911 5.911 18 Si 1.070 2.930 19 H -0.282 1.282 20 H -0.287 1.287 21 H -0.288 1.288 22 H 0.078 0.922 23 H 0.060 0.940 24 H 0.066 0.934 25 H 0.425 0.575 26 H 0.430 0.570 27 H 0.069 0.931 28 H 0.079 0.921 29 H 0.099 0.901 30 H 0.094 0.906 31 H 0.014 0.986 32 H 0.020 0.980 33 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.971 7.860 -14.723 17.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.015 3.985 3 H 0.109 0.891 4 N -0.403 5.403 5 C 0.399 3.601 6 O -0.478 6.478 7 N -0.391 5.391 8 C 0.022 3.978 9 H 0.113 0.887 10 C -0.125 4.125 11 C -0.244 4.244 12 C -0.102 4.102 13 C -0.015 4.015 14 C -0.636 4.636 15 H 0.068 0.932 16 C -0.189 4.189 17 N -0.547 5.547 18 Si 0.898 3.102 19 H -0.207 1.207 20 H -0.214 1.214 21 H -0.214 1.214 22 H 0.097 0.903 23 H 0.079 0.921 24 H 0.085 0.915 25 H 0.266 0.734 26 H 0.272 0.728 27 H 0.088 0.912 28 H 0.097 0.903 29 H 0.117 0.883 30 H 0.112 0.888 31 H 0.032 0.968 32 H 0.038 0.962 33 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -3.923 7.649 -13.620 16.105 hybrid contribution -0.712 -0.250 -1.565 1.737 sum -4.634 7.399 -15.185 17.516 Atomic orbital electron populations 1.22268 0.93859 1.03233 1.02886 1.22065 0.95339 0.96397 0.84725 0.89087 1.45310 1.55975 1.30084 1.08882 1.15960 0.79406 0.81575 0.83152 1.90973 1.52936 1.45822 1.58073 1.45255 1.56186 1.32154 1.05460 1.22051 0.93936 0.88147 0.93686 0.88704 1.21070 0.96148 0.99884 0.95387 1.22404 1.05080 1.03570 0.93304 1.23241 0.95488 0.96515 0.95001 1.18544 0.95310 0.96057 0.91589 1.21916 1.42155 0.94008 1.05538 0.93196 1.25894 0.95531 0.99776 0.97678 1.70788 1.43260 1.01152 1.39496 0.83525 0.76283 0.74403 0.75981 1.20702 1.21381 1.21410 0.90312 0.92110 0.91455 0.73408 0.72758 0.91247 0.90277 0.88263 0.88822 0.96780 0.96237 0.92082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.19 8.42 37.16 0.31 -0.88 16 2 C 0.12 1.05 4.40 -66.87 -0.29 0.76 16 3 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 4 N -0.74 -7.73 6.05 -57.98 -0.35 -8.08 16 5 C 0.70 10.14 8.92 -88.39 -0.79 9.35 16 6 O -0.60 -11.20 18.05 5.28 0.10 -11.11 16 7 N -0.73 -9.51 5.86 -58.20 -0.34 -9.85 16 8 C 0.13 1.43 3.71 -67.06 -0.25 1.18 16 9 H 0.10 1.08 8.14 -51.93 -0.42 0.65 16 10 C -0.09 -1.06 4.20 -27.89 -0.12 -1.18 16 11 C -0.23 -3.74 8.97 -36.03 -0.32 -4.06 16 12 C -0.08 -1.68 9.06 -36.02 -0.33 -2.00 16 13 C 0.02 0.54 4.73 -29.03 -0.14 0.40 16 14 C -0.60 -16.71 9.09 -34.44 -0.31 -17.02 16 15 H 0.05 1.36 7.74 -52.48 -0.41 0.96 16 16 C 0.02 0.43 5.46 -17.82 -0.10 0.33 16 17 N -0.91 -27.64 13.65 55.43 0.76 -26.89 16 18 Si 1.07 24.83 29.90 -169.99 -5.08 19.75 16 19 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 20 H -0.29 -6.32 7.11 56.52 0.40 -5.92 16 21 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 22 H 0.08 0.52 6.75 -51.93 -0.35 0.17 16 23 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 24 H 0.07 0.57 6.91 -51.93 -0.36 0.21 16 25 H 0.43 3.59 8.96 -40.82 -0.37 3.23 16 26 H 0.43 5.62 8.79 -40.82 -0.36 5.26 16 27 H 0.07 0.84 7.01 -51.93 -0.36 0.47 16 28 H 0.08 0.86 6.30 -51.93 -0.33 0.53 16 29 H 0.10 1.72 7.66 -52.49 -0.40 1.31 16 30 H 0.09 1.73 7.84 -52.49 -0.41 1.32 16 31 H 0.01 0.37 7.66 -51.93 -0.40 -0.03 16 32 H 0.02 0.52 8.01 -51.93 -0.42 0.10 16 33 H 0.27 8.11 7.22 -40.82 -0.29 7.82 16 LS Contribution 277.06 15.07 4.18 4.18 Total: -1.00 -33.41 277.06 -7.60 -41.01 By element: Atomic # 1 Polarization: 8.64 SS G_CDS: -4.52 Total: 4.12 kcal Atomic # 6 Polarization: -10.79 SS G_CDS: -2.33 Total: -13.12 kcal Atomic # 7 Polarization: -44.89 SS G_CDS: 0.06 Total: -44.83 kcal Atomic # 8 Polarization: -11.20 SS G_CDS: 0.10 Total: -11.11 kcal Atomic # 14 Polarization: 24.83 SS G_CDS: -5.08 Total: 19.75 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -33.41 -7.60 -41.01 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238475896.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.602 kcal (2) G-P(sol) polarization free energy of solvation -33.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds