Wall clock time and date at job start Mon Mar 30 2020 03:09:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09003 * 110.60198 * 2 1 4 4 N 1.47385 * 110.58796 * 237.05273 * 2 1 3 5 5 C 1.33957 * 109.20742 * 241.35401 * 4 2 1 6 6 O 1.21592 * 123.04060 * 180.02562 * 5 4 2 7 7 N 1.33943 * 113.91613 * 0.08253 * 5 4 2 8 8 C 1.47056 * 109.18020 * 359.97438 * 7 5 4 9 9 H 1.09004 * 110.54462 * 241.26407 * 8 7 5 10 10 C 1.52993 * 110.54862 * 118.59699 * 8 7 5 11 11 C 1.50696 * 109.47499 * 68.40266 * 10 8 7 12 12 C 1.30994 * 120.00334 * 125.00296 * 11 10 8 13 13 C 1.50706 * 120.00329 * 179.97438 * 12 11 10 14 14 C 1.50698 * 109.47294 * 124.99247 * 13 12 11 15 15 H 1.08005 * 119.99819 * 0.02562 * 14 13 12 16 16 C 1.37875 * 120.00046 * 179.97438 * 14 13 12 17 17 N 1.31511 * 120.00192 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 119.99979 * 180.02562 * 16 14 13 19 19 H 1.48506 * 109.47297 * 180.02562 * 18 16 14 20 20 H 1.48503 * 109.47261 * 60.00310 * 18 16 14 21 21 H 1.48500 * 109.47454 * 300.00304 * 18 16 14 22 22 H 1.09000 * 109.46604 * 297.22007 * 1 2 3 23 23 H 1.08995 * 109.47186 * 57.22107 * 1 2 3 24 24 H 1.08998 * 109.47107 * 177.22657 * 1 2 3 25 25 H 0.97000 * 125.38437 * 61.43943 * 4 2 1 26 26 H 0.96998 * 125.40912 * 179.97438 * 7 5 4 27 27 H 1.09002 * 109.47331 * 308.39960 * 10 8 7 28 28 H 1.09004 * 109.46972 * 188.40494 * 10 8 7 29 29 H 1.08001 * 119.99962 * 304.99696 * 11 10 8 30 30 H 1.07995 * 120.00160 * 359.97438 * 12 11 10 31 31 H 1.08998 * 109.46460 * 4.99808 * 13 12 11 32 32 H 1.08993 * 109.46894 * 244.99435 * 13 12 11 33 33 H 0.97001 * 119.99934 * 359.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9136 1.0203 0.0000 4 7 2.0483 -0.7504 -1.1578 5 6 2.7710 -1.7904 -0.7213 6 8 3.3170 -2.5787 -1.4689 7 7 2.8367 -1.8840 0.6132 8 6 2.0714 -0.7809 1.2132 9 1 2.7219 -0.1480 1.8169 10 6 0.9183 -1.3249 2.0589 11 6 1.4722 -2.0201 3.2757 12 6 1.0765 -1.6615 4.4719 13 6 1.6300 -2.3572 5.6888 14 6 2.2212 -1.3359 6.6260 15 1 2.1981 -0.2877 6.3666 16 6 2.7906 -1.7394 7.8151 17 7 2.8183 -3.0156 8.1312 18 14 3.5228 -0.4732 8.9770 19 1 4.0683 -1.1588 10.1761 20 1 2.4681 0.4863 9.3919 21 1 4.6147 0.2593 8.2867 22 1 -0.3632 0.4701 0.9139 23 1 -0.3633 0.5563 -0.8640 24 1 -0.3633 -1.0264 -0.0497 25 1 1.8919 -0.5258 -2.0884 26 1 3.3133 -2.5704 1.1057 27 1 0.3375 -2.0335 1.4684 28 1 0.2769 -0.5009 2.3716 29 1 2.1953 -2.8142 3.1617 30 1 0.3537 -0.8673 4.5861 31 1 2.4040 -3.0615 5.3840 32 1 0.8287 -2.8947 6.1958 33 1 2.4378 -3.6731 7.5280 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238475896.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:37 Heat of formation + Delta-G solvation = -48.316057 kcal Electronic energy + Delta-G solvation = -14962.871431 eV Core-core repulsion = 12408.404129 eV Total energy + Delta-G solvation = -2554.467302 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.18615 -38.31110 -36.83298 -35.07786 -34.04288 -32.59866 -30.09946 -27.53445 -25.77333 -24.17127 -22.81648 -21.40682 -20.30960 -18.97150 -18.92332 -17.17144 -17.03075 -15.84558 -15.76390 -15.63484 -15.51491 -15.30797 -14.48013 -14.22333 -14.12159 -13.41931 -13.28970 -12.88757 -12.69164 -12.42977 -12.30956 -12.07342 -11.94260 -11.50489 -11.33967 -10.96298 -10.58152 -10.55757 -9.94851 -9.57325 -8.67961 -6.40886 1.45535 1.55438 1.62597 1.81607 1.89179 2.08065 2.58677 3.06767 3.15394 3.34932 3.87442 4.02056 4.13002 4.30822 4.38632 4.59083 4.62870 4.75484 4.90631 5.00990 5.05961 5.10477 5.12452 5.22258 5.41412 5.77048 5.93536 5.96769 6.13229 6.21817 6.30085 6.43654 6.56326 7.41616 7.59025 8.70762 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.041335 B = 0.004977 C = 0.004843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 677.227704 B = 5624.775311 C = 5780.307359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.127 3.873 3 H 0.120 0.880 4 N -0.726 5.726 5 C 0.692 3.308 6 O -0.649 6.649 7 N -0.732 5.732 8 C 0.124 3.876 9 H 0.098 0.902 10 C -0.079 4.079 11 C -0.186 4.186 12 C -0.120 4.120 13 C 0.022 3.978 14 C -0.610 4.610 15 H 0.056 0.944 16 C -0.041 4.041 17 N -0.940 5.940 18 Si 1.119 2.881 19 H -0.286 1.286 20 H -0.265 1.265 21 H -0.268 1.268 22 H 0.092 0.908 23 H 0.079 0.921 24 H 0.054 0.946 25 H 0.435 0.565 26 H 0.427 0.573 27 H 0.078 0.922 28 H 0.105 0.895 29 H 0.086 0.914 30 H 0.113 0.887 31 H -0.010 1.010 32 H -0.005 1.005 33 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.714 10.556 -15.691 19.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.022 3.978 3 H 0.138 0.862 4 N -0.388 5.388 5 C 0.391 3.609 6 O -0.532 6.532 7 N -0.392 5.392 8 C 0.019 3.981 9 H 0.116 0.884 10 C -0.117 4.117 11 C -0.205 4.205 12 C -0.138 4.138 13 C -0.015 4.015 14 C -0.648 4.648 15 H 0.074 0.926 16 C -0.238 4.238 17 N -0.577 5.577 18 Si 0.940 3.060 19 H -0.212 1.212 20 H -0.190 1.190 21 H -0.193 1.193 22 H 0.110 0.890 23 H 0.098 0.902 24 H 0.073 0.927 25 H 0.278 0.722 26 H 0.268 0.732 27 H 0.097 0.903 28 H 0.123 0.877 29 H 0.104 0.896 30 H 0.131 0.869 31 H 0.008 0.992 32 H 0.013 0.987 33 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -4.712 10.387 -14.608 18.534 hybrid contribution -0.497 -1.130 -1.347 1.827 sum -5.209 9.258 -15.955 19.168 Atomic orbital electron populations 1.22272 0.92254 1.02978 1.04532 1.22256 0.96461 0.96760 0.82339 0.86241 1.45276 1.54620 1.28831 1.10058 1.16214 0.79560 0.81956 0.83196 1.90931 1.55137 1.47904 1.59262 1.45352 1.56105 1.32503 1.05276 1.22186 0.93358 0.87744 0.94799 0.88404 1.21101 0.96766 1.00578 0.93269 1.22663 1.02170 1.01457 0.94176 1.22907 0.98419 0.98689 0.93763 1.18425 0.93955 0.95439 0.93679 1.22376 1.41526 0.94858 1.06030 0.92554 1.27519 0.95637 1.00690 0.99954 1.70926 1.45057 1.02051 1.39685 0.82915 0.76658 0.72521 0.73914 1.21160 1.18988 1.19333 0.88972 0.90210 0.92675 0.72182 0.73239 0.90343 0.87689 0.89570 0.86935 0.99192 0.98742 0.93676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.63 8.42 71.98 0.61 -1.03 16 2 C 0.13 1.70 4.40 45.20 0.20 1.90 16 3 H 0.12 1.07 8.14 -2.39 -0.02 1.05 16 4 N -0.73 -13.26 6.05 -456.07 -2.76 -16.01 16 5 C 0.69 19.23 8.92 179.57 1.60 20.83 16 6 O -0.65 -24.34 18.05 -4.01 -0.07 -24.41 16 7 N -0.73 -18.18 5.86 -456.77 -2.68 -20.86 16 8 C 0.12 2.42 3.71 45.26 0.17 2.58 16 9 H 0.10 1.91 8.14 -2.38 -0.02 1.89 16 10 C -0.08 -1.69 4.20 29.84 0.13 -1.56 16 11 C -0.19 -5.95 8.97 25.65 0.23 -5.72 16 12 C -0.12 -4.69 9.06 25.66 0.23 -4.45 16 13 C 0.02 1.13 4.73 29.10 0.14 1.27 16 14 C -0.61 -34.37 9.09 25.60 0.23 -34.13 16 15 H 0.06 3.03 7.74 -2.91 -0.02 3.01 16 16 C -0.04 -2.37 5.46 84.65 0.46 -1.90 16 17 N -0.94 -58.58 13.65 21.45 0.29 -58.29 16 18 Si 1.12 49.33 29.90 68.60 2.05 51.38 16 19 H -0.29 -12.72 7.11 99.48 0.71 -12.02 16 20 H -0.26 -10.65 7.11 99.48 0.71 -9.95 16 21 H -0.27 -10.90 7.11 99.48 0.71 -10.20 16 22 H 0.09 0.74 6.75 -2.39 -0.02 0.72 16 23 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 24 H 0.05 0.72 6.91 -2.39 -0.02 0.71 16 25 H 0.44 6.21 8.96 -92.71 -0.83 5.37 16 26 H 0.43 11.03 8.79 -92.71 -0.81 10.22 16 27 H 0.08 1.64 7.01 -2.39 -0.02 1.62 16 28 H 0.10 1.79 6.30 -2.39 -0.02 1.78 16 29 H 0.09 2.97 7.66 -2.91 -0.02 2.95 16 30 H 0.11 3.96 7.84 -2.91 -0.02 3.94 16 31 H -0.01 -0.57 7.66 -2.39 -0.02 -0.59 16 32 H -0.01 -0.30 8.01 -2.39 -0.02 -0.32 16 33 H 0.25 16.07 7.22 -92.71 -0.67 15.40 16 Total: -1.00 -74.68 277.06 0.41 -74.27 By element: Atomic # 1 Polarization: 16.55 SS G_CDS: -0.42 Total: 16.13 kcal Atomic # 6 Polarization: -26.21 SS G_CDS: 3.99 Total: -22.22 kcal Atomic # 7 Polarization: -90.02 SS G_CDS: -5.14 Total: -95.16 kcal Atomic # 8 Polarization: -24.34 SS G_CDS: -0.07 Total: -24.41 kcal Atomic # 14 Polarization: 49.33 SS G_CDS: 2.05 Total: 51.38 kcal Total: -74.68 0.41 -74.27 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238475896.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.956 kcal (2) G-P(sol) polarization free energy of solvation -74.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds