Wall clock time and date at job start Mon Mar 30 2020 03:09:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 110.60505 * 2 1 4 4 N 1.47057 * 110.54681 * 237.22177 * 2 1 3 5 5 C 1.33947 * 109.17605 * 241.40723 * 4 2 1 6 6 O 1.21591 * 123.03555 * 180.02562 * 5 4 2 7 7 N 1.34252 * 113.96392 * 359.91676 * 5 4 2 8 8 C 1.47051 * 109.00771 * 0.13292 * 7 5 4 9 9 H 1.08997 * 110.54685 * 241.21526 * 8 7 5 10 10 C 1.50696 * 110.54663 * 118.54394 * 8 7 5 11 11 C 1.31004 * 120.00304 * 8.40859 * 10 8 7 12 12 C 1.50696 * 120.00084 * 179.97438 * 11 10 8 13 13 C 1.53002 * 109.46779 * 124.99526 * 12 11 10 14 14 C 1.50706 * 109.47153 * 179.97438 * 13 12 11 15 15 H 1.07998 * 119.99503 * 0.02562 * 14 13 12 16 16 C 1.37871 * 120.00434 * 180.02562 * 14 13 12 17 17 N 1.31516 * 119.99826 * 359.72891 * 16 14 13 18 18 Si 1.86800 * 120.00406 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47364 * 179.72558 * 18 16 14 20 20 H 1.48508 * 109.46883 * 299.72681 * 18 16 14 21 21 H 1.48497 * 109.46870 * 59.72491 * 18 16 14 22 22 H 1.09000 * 109.47018 * 297.22262 * 1 2 3 23 23 H 1.08995 * 109.47342 * 57.21864 * 1 2 3 24 24 H 1.08997 * 109.47253 * 177.22256 * 1 2 3 25 25 H 0.97000 * 125.41131 * 61.40111 * 4 2 1 26 26 H 0.97003 * 125.58314 * 180.08641 * 7 5 4 27 27 H 1.08005 * 119.99942 * 188.39911 * 10 8 7 28 28 H 1.08000 * 119.99594 * 359.97438 * 11 10 8 29 29 H 1.08999 * 109.47048 * 5.00253 * 12 11 10 30 30 H 1.08993 * 109.47202 * 244.99719 * 12 11 10 31 31 H 1.09004 * 109.47178 * 60.00383 * 13 12 11 32 32 H 1.08993 * 109.47411 * 300.00065 * 13 12 11 33 33 H 0.97000 * 120.00236 * 0.27947 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9136 1.0203 0.0000 4 7 2.0462 -0.7455 -1.1578 5 6 2.7676 -1.7875 -0.7241 6 8 3.3128 -2.5742 -1.4739 7 7 2.8366 -1.8841 0.6132 8 6 2.0709 -0.7813 1.2132 9 1 2.7212 -0.1482 1.8169 10 6 0.9353 -1.3176 2.0460 11 6 0.8478 -2.6028 2.2845 12 6 -0.2875 -3.1389 3.1178 13 6 -1.0275 -4.2243 2.3334 14 6 -2.1625 -4.7611 3.1669 15 1 -2.3387 -4.3671 4.1569 16 6 -2.9760 -5.7550 2.6657 17 7 -2.7647 -6.2311 1.4581 18 14 -4.3833 -6.4198 3.6986 19 1 -5.1052 -7.4691 2.9351 20 1 -3.8439 -7.0032 4.9533 21 1 -5.3196 -5.3155 4.0288 22 1 -0.3633 0.4701 0.9138 23 1 -0.3634 0.5564 -0.8639 24 1 -0.3633 -1.0264 -0.0498 25 1 1.8891 -0.5188 -2.0877 26 1 3.3135 -2.5703 1.1057 27 1 0.1935 -0.6424 2.4465 28 1 1.5894 -3.2779 1.8838 29 1 -0.9771 -2.3292 3.3564 30 1 0.1079 -3.5632 4.0406 31 1 -0.3380 -5.0341 2.0947 32 1 -1.4229 -3.8000 1.4106 33 1 -2.0341 -5.8857 0.9216 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238475954.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:39 Heat of formation + Delta-G solvation = -45.811286 kcal Electronic energy + Delta-G solvation = -15193.317295 eV Core-core repulsion = 12638.958608 eV Total energy + Delta-G solvation = -2554.358687 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.22874 -38.33950 -36.84879 -35.18641 -34.03303 -32.46275 -30.35368 -27.49074 -25.89560 -23.66914 -22.98129 -21.94782 -20.28364 -18.96409 -18.73882 -17.30736 -17.15776 -15.92239 -15.82286 -15.65785 -15.47773 -15.06825 -14.93195 -14.35692 -13.98254 -13.63271 -13.24481 -12.76665 -12.69162 -12.42955 -12.22210 -11.97799 -11.91843 -11.78470 -11.44386 -10.75940 -10.58929 -10.56832 -9.92361 -9.80287 -8.72234 -6.43654 1.28343 1.51222 1.60394 1.79588 1.82900 2.06293 2.56175 3.04529 3.13222 3.44336 3.70815 4.06344 4.19514 4.22350 4.48816 4.55454 4.61553 4.75276 4.76888 4.96361 4.98360 5.01419 5.33981 5.37376 5.38523 5.66959 5.89511 5.94051 5.98829 6.15495 6.25904 6.40976 6.52748 7.40561 7.54759 8.67720 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.038806 B = 0.005581 C = 0.005393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 721.355931 B = 5015.875978 C = 5190.362331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.131 3.869 3 H 0.137 0.863 4 N -0.728 5.728 5 C 0.690 3.310 6 O -0.649 6.649 7 N -0.733 5.733 8 C 0.156 3.844 9 H 0.138 0.862 10 C -0.167 4.167 11 C -0.152 4.152 12 C -0.067 4.067 13 C 0.015 3.985 14 C -0.620 4.620 15 H 0.056 0.944 16 C -0.044 4.044 17 N -0.940 5.940 18 Si 1.121 2.879 19 H -0.285 1.285 20 H -0.267 1.267 21 H -0.264 1.264 22 H 0.095 0.905 23 H 0.076 0.924 24 H 0.029 0.971 25 H 0.434 0.566 26 H 0.430 0.570 27 H 0.144 0.856 28 H 0.092 0.908 29 H 0.065 0.935 30 H 0.059 0.941 31 H -0.022 1.022 32 H -0.018 1.018 33 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.971 17.995 1.377 19.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.026 3.974 3 H 0.155 0.845 4 N -0.390 5.390 5 C 0.389 3.611 6 O -0.532 6.532 7 N -0.394 5.394 8 C 0.051 3.949 9 H 0.156 0.844 10 C -0.186 4.186 11 C -0.170 4.170 12 C -0.104 4.104 13 C -0.022 4.022 14 C -0.658 4.658 15 H 0.075 0.925 16 C -0.240 4.240 17 N -0.577 5.577 18 Si 0.941 3.059 19 H -0.211 1.211 20 H -0.192 1.192 21 H -0.189 1.189 22 H 0.114 0.886 23 H 0.095 0.905 24 H 0.048 0.952 25 H 0.277 0.723 26 H 0.272 0.728 27 H 0.161 0.839 28 H 0.110 0.890 29 H 0.083 0.917 30 H 0.078 0.922 31 H -0.004 1.004 32 H 0.000 1.000 33 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 7.002 16.578 1.032 18.025 hybrid contribution 1.404 0.247 -0.556 1.530 sum 8.406 16.825 0.476 18.814 Atomic orbital electron populations 1.22221 0.93713 1.01583 1.04407 1.22232 0.95372 0.97362 0.82414 0.84527 1.45258 1.54501 1.29024 1.10231 1.16346 0.79535 0.81805 0.83443 1.90931 1.55249 1.47814 1.59193 1.45365 1.56061 1.32919 1.05098 1.21263 0.91765 0.87536 0.94327 0.84433 1.23169 0.99458 0.95902 1.00024 1.22817 0.98093 0.96939 0.99154 1.20474 0.94813 0.97793 0.97368 1.19090 0.94447 0.93658 0.95013 1.22554 1.16141 1.23475 1.03596 0.92523 1.27594 1.03689 0.94970 0.97792 1.70928 1.31852 1.44099 1.10834 0.82914 0.72710 0.76405 0.73910 1.21088 1.19186 1.18913 0.88642 0.90547 0.95210 0.72348 0.72821 0.83874 0.89010 0.91683 0.92232 1.00392 1.00010 0.93913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.69 8.42 71.98 0.61 -2.09 16 2 C 0.13 1.95 4.38 45.26 0.20 2.15 16 3 H 0.14 0.97 8.14 -2.39 -0.02 0.95 16 4 N -0.73 -15.76 6.03 -456.50 -2.75 -18.51 16 5 C 0.69 21.06 8.92 179.48 1.60 22.66 16 6 O -0.65 -26.56 18.05 -4.00 -0.07 -26.63 16 7 N -0.73 -18.10 4.89 -459.92 -2.25 -20.35 16 8 C 0.16 2.73 4.29 44.51 0.19 2.93 16 9 H 0.14 1.44 8.14 -2.39 -0.02 1.42 16 10 C -0.17 -3.82 7.11 25.64 0.18 -3.64 16 11 C -0.15 -4.88 8.87 25.64 0.23 -4.66 16 12 C -0.07 -2.71 5.60 29.85 0.17 -2.54 16 13 C 0.01 0.80 4.27 29.85 0.13 0.93 16 14 C -0.62 -36.15 9.11 25.60 0.23 -35.92 16 15 H 0.06 3.14 7.74 -2.91 -0.02 3.12 16 16 C -0.04 -2.61 5.46 84.65 0.46 -2.15 16 17 N -0.94 -60.72 13.65 21.45 0.29 -60.43 16 18 Si 1.12 50.77 29.90 68.60 2.05 52.83 16 19 H -0.29 -13.01 7.11 99.48 0.71 -12.30 16 20 H -0.27 -11.12 7.11 99.48 0.71 -10.42 16 21 H -0.26 -10.90 7.11 99.48 0.71 -10.20 16 22 H 0.09 1.24 6.97 -2.39 -0.02 1.22 16 23 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 24 H 0.03 0.76 7.56 -2.39 -0.02 0.74 16 25 H 0.43 7.99 8.96 -92.71 -0.83 7.16 16 26 H 0.43 10.32 8.22 -92.71 -0.76 9.55 16 27 H 0.14 2.75 6.80 -2.91 -0.02 2.73 16 28 H 0.09 3.13 6.41 -2.91 -0.02 3.11 16 29 H 0.06 2.46 7.79 -2.39 -0.02 2.44 16 30 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 31 H -0.02 -1.31 8.01 -2.39 -0.02 -1.33 16 32 H -0.02 -1.07 8.00 -2.39 -0.02 -1.09 16 33 H 0.25 16.68 7.22 -92.71 -0.67 16.01 16 Total: -1.00 -79.83 276.54 0.89 -78.94 By element: Atomic # 1 Polarization: 16.86 SS G_CDS: -0.37 Total: 16.49 kcal Atomic # 6 Polarization: -26.32 SS G_CDS: 4.00 Total: -22.32 kcal Atomic # 7 Polarization: -94.59 SS G_CDS: -4.71 Total: -99.30 kcal Atomic # 8 Polarization: -26.56 SS G_CDS: -0.07 Total: -26.63 kcal Atomic # 14 Polarization: 50.77 SS G_CDS: 2.05 Total: 52.83 kcal Total: -79.83 0.89 -78.94 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238475954.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.124 kcal (2) G-P(sol) polarization free energy of solvation -79.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds