Wall clock time and date at job start Mon Mar 30 2020 03:10:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50701 * 119.99826 * 2 1 4 4 N 1.46906 * 109.46794 * 125.27501 * 3 2 1 5 5 C 1.47189 * 111.00060 * 47.11286 * 4 3 2 6 6 C 1.52965 * 108.74208 * 192.35082 * 5 4 3 7 7 H 1.09003 * 109.28465 * 69.83765 * 6 5 4 8 8 C 1.53004 * 109.37227 * 189.54295 * 6 5 4 9 9 N 1.46007 * 110.04515 * 309.72017 * 6 5 4 10 10 C 1.33716 * 122.92677 * 18.15761 * 9 6 5 11 11 O 1.21280 * 118.62393 * 178.31597 * 10 9 6 12 12 C 1.46904 * 111.00027 * 170.00021 * 4 3 2 13 13 H 1.09000 * 109.38874 * 306.49527 * 12 4 3 14 14 C 1.50707 * 109.38531 * 66.28374 * 12 4 3 15 15 H 1.08000 * 119.99430 * 359.97438 * 14 12 4 16 16 C 1.37873 * 119.99995 * 180.02562 * 14 12 4 17 17 N 1.31516 * 119.99827 * 359.97438 * 16 14 12 18 18 Si 1.86796 * 119.99990 * 180.02562 * 16 14 12 19 19 H 1.48496 * 109.47297 * 89.99817 * 18 16 14 20 20 H 1.48499 * 109.47309 * 209.99829 * 18 16 14 21 21 H 1.48501 * 109.47298 * 329.99550 * 18 16 14 22 22 H 1.07998 * 120.00195 * 179.72135 * 1 2 3 23 23 H 1.08002 * 120.00350 * 359.72370 * 1 2 3 24 24 H 1.08002 * 120.00352 * 180.28242 * 2 1 3 25 25 H 1.08998 * 109.47474 * 245.27493 * 3 2 1 26 26 H 1.09001 * 109.47291 * 5.27780 * 3 2 1 27 27 H 1.09001 * 109.59352 * 312.13592 * 5 4 3 28 28 H 1.08998 * 109.59449 * 72.58429 * 5 4 3 29 29 H 1.08997 * 109.47127 * 180.58427 * 8 6 5 30 30 H 1.09000 * 109.46969 * 300.58172 * 8 6 5 31 31 H 1.09000 * 109.47147 * 60.58734 * 8 6 5 32 32 H 0.97000 * 118.53754 * 198.14783 * 9 6 5 33 33 H 0.97000 * 119.99789 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 3.0009 1.3292 1.1308 5 6 3.7645 0.0733 1.2098 6 6 4.4867 0.0212 2.5572 7 1 3.7545 -0.1158 3.3530 8 6 5.4675 -1.1531 2.5622 9 7 5.2185 1.2646 2.7812 10 6 4.9607 2.3910 2.1085 11 8 5.5962 3.3879 2.3792 12 6 3.9168 2.4735 1.0310 13 1 4.4025 2.4641 0.0552 14 6 3.1373 3.7535 1.1894 15 1 2.0695 3.7193 1.3477 16 6 3.7871 4.9681 1.1312 17 7 5.0873 5.0096 0.9379 18 14 2.8210 6.5546 1.3283 19 1 2.7731 6.9299 2.7642 20 1 3.4828 7.6364 0.5557 21 1 1.4389 6.3588 0.8215 22 1 -0.5400 -0.9353 -0.0045 23 1 -0.5401 0.9353 0.0045 24 1 1.8500 -0.9353 -0.0046 25 1 2.6173 1.4049 -0.9334 26 1 1.3589 2.1314 0.0945 27 1 3.0839 -0.7740 1.1267 28 1 4.4954 0.0385 0.4019 29 1 5.9755 -1.1981 3.5255 30 1 4.9226 -2.0823 2.3951 31 1 6.2030 -1.0156 1.7696 32 1 5.9231 1.2739 3.4478 33 1 5.5444 5.8641 0.8966 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000251531280.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:19 Heat of formation + Delta-G solvation = 16.607065 kcal Electronic energy + Delta-G solvation = -16118.307164 eV Core-core repulsion = 13566.655140 eV Total energy + Delta-G solvation = -2551.652024 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.23502 -36.44483 -34.98832 -33.04658 -31.74914 -30.10186 -27.48742 -26.38188 -23.92698 -22.03063 -21.44348 -19.15852 -18.23397 -16.70583 -16.07966 -15.39751 -14.91787 -14.37724 -14.28417 -13.66500 -13.57368 -12.89621 -12.66690 -12.38081 -12.26450 -11.90272 -11.62172 -11.27892 -10.92928 -10.79546 -10.65063 -10.54406 -10.28421 -9.82649 -9.33352 -9.15856 -8.39420 -7.98278 -7.89102 -7.38286 -5.81186 -3.90493 2.57488 3.39348 3.45604 3.47200 4.28185 4.35159 4.55829 4.79287 5.23743 5.26163 5.40103 5.49726 5.55791 5.63457 5.78570 5.91374 5.97024 6.09281 6.16346 6.19451 6.39184 6.51841 6.65014 6.89458 7.08774 7.15014 7.48777 7.85218 8.04556 8.06516 8.37935 8.67504 9.04651 9.68911 9.92761 11.18851 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.022688 B = 0.012076 C = 0.008305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.847648 B = 2318.005158 C = 3370.555113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.146 4.146 3 C 0.090 3.910 4 N -0.523 5.523 5 C 0.034 3.966 6 C 0.150 3.850 7 H 0.065 0.935 8 C -0.161 4.161 9 N -0.746 5.746 10 C 0.508 3.492 11 O -0.488 6.488 12 C 0.214 3.786 13 H 0.026 0.974 14 C -0.534 4.534 15 H 0.067 0.933 16 C 0.073 3.927 17 N -0.822 5.822 18 Si 0.896 3.104 19 H -0.281 1.281 20 H -0.288 1.288 21 H -0.274 1.274 22 H 0.091 0.909 23 H 0.097 0.903 24 H 0.104 0.896 25 H 0.037 0.963 26 H 0.088 0.912 27 H 0.082 0.918 28 H 0.031 0.969 29 H 0.056 0.944 30 H 0.063 0.937 31 H 0.057 0.943 32 H 0.375 0.625 33 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.400 -11.961 -0.458 12.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.164 4.164 3 C -0.038 4.038 4 N -0.248 5.248 5 C -0.095 4.095 6 C 0.043 3.957 7 H 0.083 0.917 8 C -0.220 4.220 9 N -0.405 5.405 10 C 0.295 3.705 11 O -0.357 6.357 12 C 0.105 3.895 13 H 0.043 0.957 14 C -0.572 4.572 15 H 0.085 0.915 16 C -0.136 4.136 17 N -0.455 5.455 18 Si 0.723 3.277 19 H -0.208 1.208 20 H -0.214 1.214 21 H -0.199 1.199 22 H 0.109 0.891 23 H 0.115 0.885 24 H 0.122 0.878 25 H 0.055 0.945 26 H 0.106 0.894 27 H 0.100 0.900 28 H 0.049 0.951 29 H 0.075 0.925 30 H 0.082 0.918 31 H 0.076 0.924 32 H 0.209 0.791 33 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -3.301 -11.148 -0.096 11.627 hybrid contribution 0.339 0.568 -0.225 0.699 sum -2.962 -10.580 -0.321 10.992 Atomic orbital electron populations 1.23742 0.95905 1.01388 1.02242 1.23147 0.96116 0.98571 0.98615 1.21157 0.95584 0.94875 0.92148 1.62683 1.18528 1.01828 1.41801 1.22553 0.96326 0.94974 0.95658 1.20729 0.92961 0.84550 0.97433 0.91747 1.22153 0.99762 0.97960 1.02079 1.46416 1.39697 1.10883 1.43470 1.21765 0.83993 0.81429 0.83329 1.90782 1.48378 1.32546 1.63945 1.19381 0.88159 0.89368 0.92572 0.95706 1.20553 0.94104 0.87976 1.54608 0.91497 1.24972 0.94650 0.99081 0.94940 1.70247 1.07094 1.24803 1.43313 0.86554 0.79904 0.83113 0.78081 1.20766 1.21392 1.19907 0.89103 0.88482 0.87800 0.94478 0.89378 0.89958 0.95063 0.92460 0.91813 0.92370 0.79103 0.93401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.56 14.32 29.02 0.42 -2.14 16 2 C -0.15 -2.14 8.65 -36.02 -0.31 -2.45 16 3 C 0.09 1.66 5.31 -4.97 -0.03 1.64 16 4 N -0.52 -10.95 4.60 -230.90 -1.06 -12.01 16 5 C 0.03 0.57 4.59 -3.68 -0.02 0.56 16 6 C 0.15 2.44 3.87 -68.21 -0.26 2.18 16 7 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 8 C -0.16 -1.97 9.43 37.16 0.35 -1.62 16 9 N -0.75 -15.29 5.18 -54.56 -0.28 -15.57 16 10 C 0.51 13.24 7.36 -11.68 -0.09 13.16 16 11 O -0.49 -14.76 13.73 5.56 0.08 -14.69 16 12 C 0.21 5.53 1.94 -70.23 -0.14 5.39 16 13 H 0.03 0.71 8.00 -51.93 -0.42 0.30 16 14 C -0.53 -15.11 8.05 -34.44 -0.28 -15.39 16 15 H 0.07 1.87 7.13 -52.49 -0.37 1.50 16 16 C 0.07 2.11 4.97 -17.82 -0.09 2.02 16 17 N -0.82 -25.16 10.23 55.43 0.57 -24.59 16 18 Si 0.90 22.27 29.54 -169.99 -5.02 17.25 16 19 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 20 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 21 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 22 H 0.09 0.99 8.06 -52.49 -0.42 0.57 16 23 H 0.10 1.29 7.84 -52.49 -0.41 0.88 16 24 H 0.10 1.34 6.34 -52.49 -0.33 1.00 16 25 H 0.04 0.71 7.98 -51.93 -0.41 0.29 16 26 H 0.09 1.76 6.83 -51.93 -0.35 1.40 16 27 H 0.08 1.16 5.47 -51.93 -0.28 0.88 16 28 H 0.03 0.55 8.06 -51.93 -0.42 0.13 16 29 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.37 7.08 8.74 -40.82 -0.36 6.72 16 33 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 268.40 15.07 4.04 4.04 Total: -1.00 -32.77 268.40 -6.73 -39.50 By element: Atomic # 1 Polarization: 7.32 SS G_CDS: -4.61 Total: 2.71 kcal Atomic # 6 Polarization: 3.79 SS G_CDS: -0.44 Total: 3.35 kcal Atomic # 7 Polarization: -51.39 SS G_CDS: -0.78 Total: -52.17 kcal Atomic # 8 Polarization: -14.76 SS G_CDS: 0.08 Total: -14.69 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -32.77 -6.73 -39.50 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251531280.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.108 kcal (2) G-P(sol) polarization free energy of solvation -32.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.501 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds