Wall clock time and date at job start Mon Mar 30 2020 03:10:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50706 * 119.99536 * 2 1 4 4 N 1.46901 * 109.46814 * 125.00587 * 3 2 1 5 5 C 1.47190 * 111.00289 * 66.04306 * 4 3 2 6 6 C 1.52979 * 108.85506 * 192.44318 * 5 4 3 7 7 H 1.09004 * 109.37489 * 189.45825 * 6 5 4 8 8 C 1.52994 * 109.37800 * 69.80608 * 6 5 4 9 9 N 1.46008 * 110.04225 * 309.63002 * 6 5 4 10 10 C 1.33712 * 122.92796 * 18.16519 * 9 6 5 11 11 O 1.21286 * 118.62532 * 178.31476 * 10 9 6 12 12 C 1.47186 * 111.22064 * 188.88279 * 4 3 2 13 13 H 1.08995 * 109.33264 * 306.57859 * 12 4 3 14 14 C 1.50703 * 109.35475 * 66.21682 * 12 4 3 15 15 H 1.07996 * 119.99989 * 0.60076 * 14 12 4 16 16 C 1.37881 * 119.99570 * 180.60517 * 14 12 4 17 17 N 1.31507 * 120.00266 * 359.97438 * 16 14 12 18 18 Si 1.86798 * 119.99462 * 179.97438 * 16 14 12 19 19 H 1.48503 * 109.47633 * 0.02562 * 18 16 14 20 20 H 1.48499 * 109.47006 * 120.00216 * 18 16 14 21 21 H 1.48497 * 109.47495 * 239.99856 * 18 16 14 22 22 H 1.08002 * 120.00263 * 180.02562 * 1 2 3 23 23 H 1.07999 * 120.00331 * 359.97438 * 1 2 3 24 24 H 1.07992 * 120.00272 * 180.02562 * 2 1 3 25 25 H 1.09002 * 109.47411 * 5.00603 * 3 2 1 26 26 H 1.09000 * 109.46728 * 244.99933 * 3 2 1 27 27 H 1.09002 * 109.59473 * 72.59110 * 5 4 3 28 28 H 1.09003 * 109.59189 * 312.28994 * 5 4 3 29 29 H 1.09000 * 109.47495 * 60.00288 * 8 6 5 30 30 H 1.09004 * 109.47143 * 179.97438 * 8 6 5 31 31 H 1.09000 * 109.47589 * 299.99860 * 8 6 5 32 32 H 0.97000 * 118.54060 * 198.14320 * 9 6 5 33 33 H 0.97006 * 119.99928 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 2.9963 1.3320 1.1345 5 6 4.0515 0.3185 0.9738 6 6 4.8015 0.1713 2.2990 7 1 5.6857 -0.4478 2.1473 8 6 3.8875 -0.4969 3.3280 9 7 5.2081 1.4840 2.7924 10 6 4.6601 2.6246 2.3602 11 8 5.0359 3.6704 2.8462 12 6 3.5988 2.6650 1.2974 13 1 4.0443 2.9775 0.3530 14 6 2.5304 3.6509 1.6945 15 1 1.5107 3.3194 1.8232 16 6 2.8550 4.9761 1.8936 17 7 4.0968 5.3796 1.7373 18 14 1.5305 6.1982 2.3852 19 1 0.2261 5.4970 2.4954 20 1 1.8783 6.8045 3.6954 21 1 1.4344 7.2646 1.3563 22 1 -0.5401 -0.9353 0.0004 23 1 -0.5400 0.9353 0.0004 24 1 1.8500 -0.9352 -0.0004 25 1 1.3584 2.1317 0.0897 26 1 2.6212 1.4027 -0.9314 27 1 4.7452 0.6334 0.1942 28 1 3.6026 -0.6363 0.6998 29 1 3.5913 -1.4814 2.9660 30 1 4.4206 -0.6030 4.2729 31 1 2.9995 0.1171 3.4784 32 1 5.9066 1.5308 3.4638 33 1 4.3250 6.3120 1.8770 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000251531294.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:21 Heat of formation + Delta-G solvation = -11.035489 kcal Electronic energy + Delta-G solvation = -16245.840726 eV Core-core repulsion = 13692.990031 eV Total energy + Delta-G solvation = -2552.850695 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.96913 -38.13714 -36.45450 -34.76480 -33.42936 -31.59557 -29.26232 -27.61829 -25.93479 -23.62905 -23.13324 -20.38996 -19.69385 -18.57231 -17.76722 -17.26512 -16.35835 -16.24935 -15.57295 -15.31392 -15.16132 -14.58802 -14.41799 -14.01209 -13.62723 -13.26438 -12.87175 -12.80441 -12.65783 -12.51887 -12.30558 -12.01057 -11.82500 -11.64723 -11.17732 -10.55700 -10.31513 -9.97072 -9.66000 -9.03663 -8.00526 -6.14696 1.38128 1.41302 1.50850 1.52949 2.26752 2.50707 2.75180 3.25813 3.34784 3.97939 4.09777 4.18855 4.40676 4.42997 4.51406 4.65387 4.75872 4.83019 5.04448 5.07648 5.09883 5.16668 5.18197 5.58986 5.66422 5.81035 5.86881 6.05919 6.20754 6.36620 6.57719 6.71096 6.97945 7.48723 7.98628 8.99849 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.022543 B = 0.012672 C = 0.009033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.797361 B = 2209.098169 C = 3098.983163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.145 4.145 3 C 0.085 3.915 4 N -0.522 5.522 5 C 0.032 3.968 6 C 0.142 3.858 7 H 0.110 0.890 8 C -0.148 4.148 9 N -0.735 5.735 10 C 0.503 3.497 11 O -0.544 6.544 12 C 0.217 3.783 13 H -0.012 1.012 14 C -0.542 4.542 15 H 0.063 0.937 16 C 0.019 3.981 17 N -0.857 5.857 18 Si 0.957 3.043 19 H -0.261 1.261 20 H -0.290 1.290 21 H -0.275 1.275 22 H 0.121 0.879 23 H 0.085 0.915 24 H 0.128 0.872 25 H 0.064 0.936 26 H 0.029 0.971 27 H 0.024 0.976 28 H 0.119 0.881 29 H 0.088 0.912 30 H 0.056 0.944 31 H 0.038 0.962 32 H 0.386 0.614 33 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.262 -14.526 -2.246 14.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.163 4.163 3 C -0.043 4.043 4 N -0.247 5.247 5 C -0.096 4.096 6 C 0.038 3.962 7 H 0.127 0.873 8 C -0.206 4.206 9 N -0.390 5.390 10 C 0.290 3.710 11 O -0.418 6.418 12 C 0.106 3.894 13 H 0.005 0.995 14 C -0.580 4.580 15 H 0.081 0.919 16 C -0.186 4.186 17 N -0.492 5.492 18 Si 0.783 3.217 19 H -0.185 1.185 20 H -0.217 1.217 21 H -0.201 1.201 22 H 0.140 0.860 23 H 0.103 0.897 24 H 0.146 0.854 25 H 0.082 0.918 26 H 0.047 0.953 27 H 0.042 0.958 28 H 0.137 0.863 29 H 0.106 0.894 30 H 0.075 0.925 31 H 0.057 0.943 32 H 0.220 0.780 33 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -2.362 -13.894 -1.737 14.200 hybrid contribution 0.433 1.394 -0.147 1.467 sum -1.929 -12.501 -1.883 12.788 Atomic orbital electron populations 1.23943 0.95691 1.02311 1.00279 1.22859 0.96168 0.97168 1.00102 1.21153 0.95290 0.97080 0.90761 1.62576 1.16579 1.04316 1.41237 1.22676 0.93278 0.97946 0.95722 1.21195 0.98057 0.83281 0.93702 0.87263 1.22066 0.99354 1.00760 0.98425 1.46121 1.41291 1.06492 1.45105 1.21625 0.82003 0.82894 0.84440 1.90740 1.61364 1.32666 1.57014 1.19085 0.91454 0.87524 0.91302 0.99471 1.20875 0.94119 0.91946 1.51073 0.91907 1.25810 0.97029 1.00499 0.95298 1.70421 1.18266 1.15076 1.45405 0.85530 0.79741 0.78980 0.77466 1.18513 1.21686 1.20101 0.86043 0.89689 0.85426 0.91751 0.95340 0.95809 0.86321 0.89368 0.92463 0.94269 0.77957 0.93993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.53 14.32 67.78 0.97 -3.56 16 2 C -0.14 -3.91 9.19 25.65 0.24 -3.67 16 3 C 0.08 3.07 5.26 85.56 0.45 3.52 16 4 N -0.52 -21.08 4.09 -883.67 -3.61 -24.69 16 5 C 0.03 0.99 4.81 86.24 0.42 1.41 16 6 C 0.14 4.12 3.92 45.08 0.18 4.30 16 7 H 0.11 2.33 8.14 -2.39 -0.02 2.31 16 8 C -0.15 -3.83 9.40 71.98 0.68 -3.15 16 9 N -0.73 -29.03 5.11 -445.47 -2.28 -31.31 16 10 C 0.50 26.56 7.36 87.68 0.65 27.20 16 11 O -0.54 -34.01 13.79 -3.05 -0.04 -34.05 16 12 C 0.22 11.38 1.94 43.23 0.08 11.46 16 13 H -0.01 -0.69 8.12 -2.39 -0.02 -0.71 16 14 C -0.54 -31.32 7.80 25.60 0.20 -31.12 16 15 H 0.06 3.59 7.20 -2.91 -0.02 3.57 16 16 C 0.02 1.13 4.97 84.66 0.42 1.55 16 17 N -0.86 -54.49 10.29 21.45 0.22 -54.27 16 18 Si 0.96 46.72 29.54 68.60 2.03 48.74 16 19 H -0.26 -12.10 7.11 99.48 0.71 -11.39 16 20 H -0.29 -14.33 7.11 99.48 0.71 -13.63 16 21 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 22 H 0.12 2.25 8.06 -2.91 -0.02 2.23 16 23 H 0.08 2.28 7.84 -2.91 -0.02 2.25 16 24 H 0.13 2.74 6.77 -2.91 -0.02 2.72 16 25 H 0.06 2.69 6.36 -2.39 -0.02 2.67 16 26 H 0.03 1.03 8.12 -2.39 -0.02 1.01 16 27 H 0.02 0.78 8.08 -2.39 -0.02 0.76 16 28 H 0.12 2.74 6.24 -2.39 -0.01 2.73 16 29 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 30 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.04 1.31 7.87 -2.39 -0.02 1.29 16 32 H 0.39 13.96 8.84 -92.71 -0.82 13.14 16 33 H 0.25 15.33 8.31 -92.70 -0.77 14.56 16 Total: -1.00 -74.15 269.35 0.87 -73.28 By element: Atomic # 1 Polarization: 14.08 SS G_CDS: 0.28 Total: 14.36 kcal Atomic # 6 Polarization: 3.66 SS G_CDS: 4.27 Total: 7.94 kcal Atomic # 7 Polarization: -104.60 SS G_CDS: -5.67 Total: -110.26 kcal Atomic # 8 Polarization: -34.01 SS G_CDS: -0.04 Total: -34.05 kcal Atomic # 14 Polarization: 46.72 SS G_CDS: 2.03 Total: 48.74 kcal Total: -74.15 0.87 -73.28 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251531294.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.243 kcal (2) G-P(sol) polarization free energy of solvation -74.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds