Wall clock time and date at job start Mon Mar 30 2020 03:23:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34262 * 125.58527 * 2 1 4 4 O 1.21578 * 122.99479 * 0.02562 * 3 2 1 5 5 N 1.33943 * 113.96287 * 179.91421 * 3 2 1 6 6 C 1.37187 * 125.41047 * 180.02562 * 5 3 2 7 7 H 1.08002 * 120.00198 * 354.23834 * 6 5 3 8 8 C 1.38884 * 120.00329 * 174.23012 * 6 5 3 9 9 N 1.31478 * 119.99332 * 6.95725 * 8 6 5 10 10 Si 1.86797 * 120.00274 * 186.95574 * 8 6 5 11 11 H 1.48500 * 109.47203 * 0.02562 * 10 8 6 12 12 H 1.48504 * 109.46899 * 120.00112 * 10 8 6 13 13 H 1.48503 * 109.47087 * 239.99749 * 10 8 6 14 14 C 1.47057 * 109.18200 * 0.08718 * 5 3 2 15 15 C 1.47060 * 125.41126 * 180.02562 * 2 1 3 16 16 H 1.08995 * 110.54678 * 298.73684 * 15 2 1 17 17 C 1.53001 * 110.54635 * 61.40411 * 15 2 1 18 18 C 1.53781 * 113.61287 * 197.46034 * 17 15 2 19 19 C 1.54055 * 86.98182 * 140.02127 * 18 17 15 20 20 C 1.53776 * 87.07754 * 334.56707 * 19 18 17 21 21 H 1.09000 * 109.47503 * 269.93596 * 1 2 3 22 22 H 1.08995 * 109.46792 * 29.94066 * 1 2 3 23 23 H 1.09004 * 109.46619 * 149.93886 * 1 2 3 24 24 H 0.97008 * 119.99736 * 180.02562 * 9 8 6 25 25 H 1.09002 * 110.54891 * 241.40555 * 14 5 3 26 26 H 1.08997 * 110.55180 * 118.58965 * 14 5 3 27 27 H 1.09000 * 112.85030 * 66.26434 * 17 15 2 28 28 H 1.08995 * 113.61303 * 254.61616 * 18 17 15 29 29 H 1.09003 * 113.61223 * 25.52086 * 18 17 15 30 30 H 1.09003 * 113.61337 * 220.02163 * 19 18 17 31 31 H 1.08997 * 113.68874 * 89.13420 * 19 18 17 32 32 H 1.09002 * 113.61784 * 270.88154 * 20 19 18 33 33 H 1.09006 * 113.68809 * 139.98792 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2463 1.0919 0.0000 4 8 1.8023 2.2237 0.0005 5 7 3.5583 0.8220 0.0018 6 6 4.5621 1.7571 0.0027 7 1 4.3231 2.8061 -0.0919 8 6 5.8857 1.3548 0.1256 9 7 6.1887 0.0756 0.1033 10 14 7.2354 2.6312 0.3223 11 1 6.6363 3.9899 0.3172 12 1 7.9441 2.4079 1.6081 13 1 8.1988 2.5101 -0.8014 14 6 3.7517 -0.6357 0.0012 15 6 2.3171 -1.1986 -0.0005 16 1 2.1389 -1.7951 0.8941 17 6 2.0694 -2.0330 -1.2588 18 6 2.5805 -3.4793 -1.1494 19 6 1.2977 -3.9024 -1.8901 20 6 0.6507 -2.6209 -1.3386 21 1 -0.3634 -0.0011 1.0276 22 1 -0.3633 0.8905 -0.5129 23 1 -0.3633 -0.8895 -0.5148 24 1 7.1132 -0.2054 0.1895 25 1 4.2849 -0.9513 0.8980 26 1 4.2876 -0.9503 -0.8943 27 1 2.3841 -1.5266 -2.1713 28 1 3.4939 -3.6635 -1.7148 29 1 2.6343 -3.8469 -0.1246 30 1 0.8516 -4.8183 -1.5026 31 1 1.4002 -3.9077 -2.9753 32 1 0.1780 -2.7544 -0.3656 33 1 0.0068 -2.1118 -2.0559 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259338670.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:12 Heat of formation + Delta-G solvation = 16.270228 kcal Electronic energy + Delta-G solvation = -16106.488834 eV Core-core repulsion = 13554.822204 eV Total energy + Delta-G solvation = -2551.666631 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.20132 -38.08589 -34.85994 -34.15932 -31.52701 -29.15868 -26.63324 -25.35505 -24.98669 -23.75213 -20.96700 -19.32091 -19.10424 -17.30909 -15.90426 -15.55899 -15.04174 -14.88878 -14.15845 -13.71935 -13.31276 -13.00680 -12.78590 -12.35175 -12.13863 -11.87217 -11.64084 -11.44465 -11.31043 -11.03221 -10.87297 -10.45313 -10.30556 -10.25496 -10.05827 -9.73479 -9.02991 -8.70918 -7.95392 -7.56647 -6.23800 -3.69737 3.22158 3.29724 3.36050 3.70405 4.29187 4.36056 4.80178 4.83685 4.90837 5.08535 5.30205 5.40127 5.59405 5.65715 5.72532 5.80528 5.87485 5.93256 6.01314 6.04127 6.16755 6.19989 6.23883 6.45115 6.71188 6.85957 7.08121 7.34367 7.59284 7.78402 8.35103 8.71479 9.31234 9.50722 10.26261 10.86520 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.033713 B = 0.009314 C = 0.007538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.328924 B = 3005.473478 C = 3713.642078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.123 3.877 2 N -0.645 5.645 3 C 0.650 3.350 4 O -0.628 6.628 5 N -0.471 5.471 6 C -0.274 4.274 7 H 0.102 0.898 8 C 0.021 3.979 9 N -0.901 5.901 10 Si 0.931 3.069 11 H -0.270 1.270 12 H -0.282 1.282 13 H -0.283 1.283 14 C 0.141 3.859 15 C 0.121 3.879 16 H 0.070 0.930 17 C -0.111 4.111 18 C -0.130 4.130 19 C -0.142 4.142 20 C -0.136 4.136 21 H 0.037 0.963 22 H 0.064 0.936 23 H 0.067 0.933 24 H 0.265 0.735 25 H 0.079 0.921 26 H 0.079 0.921 27 H 0.091 0.909 28 H 0.069 0.931 29 H 0.081 0.919 30 H 0.063 0.937 31 H 0.076 0.924 32 H 0.080 0.920 33 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.553 -9.596 -1.848 11.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.020 4.020 2 N -0.385 5.385 3 C 0.353 3.647 4 O -0.512 6.512 5 N -0.195 5.195 6 C -0.401 4.401 7 H 0.120 0.880 8 C -0.179 4.179 9 N -0.542 5.542 10 Si 0.758 3.242 11 H -0.194 1.194 12 H -0.208 1.208 13 H -0.209 1.209 14 C 0.017 3.983 15 C 0.015 3.985 16 H 0.088 0.912 17 C -0.131 4.131 18 C -0.168 4.168 19 C -0.180 4.180 20 C -0.174 4.174 21 H 0.055 0.945 22 H 0.083 0.917 23 H 0.086 0.914 24 H 0.075 0.925 25 H 0.097 0.903 26 H 0.097 0.903 27 H 0.109 0.891 28 H 0.088 0.912 29 H 0.100 0.900 30 H 0.081 0.919 31 H 0.095 0.905 32 H 0.098 0.902 33 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -6.597 -8.994 -1.826 11.302 hybrid contribution 0.779 0.337 0.099 0.855 sum -5.817 -8.656 -1.727 10.571 Atomic orbital electron populations 1.21266 0.78290 1.02139 1.00265 1.46962 1.04771 1.05917 1.80888 1.15914 0.82340 0.83985 0.82490 1.90713 1.76667 1.21139 1.62660 1.42776 1.02815 1.05511 1.68388 1.19470 0.84072 0.89043 1.47546 0.88019 1.25171 0.97962 0.97041 0.97729 1.69901 1.19108 1.13771 1.51452 0.85780 0.80284 0.80435 0.77725 1.19411 1.20787 1.20908 1.22112 0.90540 0.81618 1.04032 1.22177 0.92230 0.87748 0.96315 0.91241 1.22886 0.96253 0.94925 0.99052 1.22915 0.97499 0.95537 1.00868 1.22876 0.97568 0.97541 1.00009 1.22971 0.96686 0.96717 1.00977 0.94460 0.91682 0.91433 0.92450 0.90296 0.90303 0.89054 0.91230 0.90023 0.91873 0.90522 0.90178 0.91697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 2.06 10.81 59.85 0.65 2.70 16 2 N -0.65 -13.59 3.10 -179.01 -0.55 -14.14 16 3 C 0.65 17.38 8.25 -88.12 -0.73 16.66 16 4 O -0.63 -18.89 17.03 5.30 0.09 -18.80 16 5 N -0.47 -12.89 3.07 -119.51 -0.37 -13.26 16 6 C -0.27 -7.93 9.92 -14.92 -0.15 -8.08 16 7 H 0.10 3.05 7.68 -52.49 -0.40 2.65 16 8 C 0.02 0.58 5.48 -17.46 -0.10 0.48 16 9 N -0.90 -24.20 10.40 55.49 0.58 -23.62 16 10 Si 0.93 21.28 29.56 -169.99 -5.02 16.26 16 11 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 12 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 13 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 14 C 0.14 3.26 5.30 -3.16 -0.02 3.24 16 15 C 0.12 2.24 3.22 -67.05 -0.22 2.02 16 16 H 0.07 1.18 8.04 -51.93 -0.42 0.76 16 17 C -0.11 -1.70 3.14 -89.81 -0.28 -1.98 16 18 C -0.13 -1.66 7.66 -25.77 -0.20 -1.85 16 19 C -0.14 -1.57 8.09 -25.78 -0.21 -1.77 16 20 C -0.14 -1.67 5.34 -25.92 -0.14 -1.81 16 21 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 22 H 0.06 1.14 7.93 -51.93 -0.41 0.73 16 23 H 0.07 0.90 4.53 -51.93 -0.24 0.67 16 24 H 0.27 6.75 8.31 -40.82 -0.34 6.41 16 25 H 0.08 1.91 7.38 -51.93 -0.38 1.53 16 26 H 0.08 1.89 7.22 -51.93 -0.38 1.51 16 27 H 0.09 1.56 8.14 -51.93 -0.42 1.14 16 28 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.08 0.98 8.03 -51.93 -0.42 0.57 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 32 H 0.08 0.93 7.53 -51.93 -0.39 0.54 16 33 H 0.06 0.78 7.73 -51.93 -0.40 0.38 16 LS Contribution 266.77 15.07 4.02 4.02 Total: -1.00 -32.23 266.77 -7.33 -39.55 By element: Atomic # 1 Polarization: 5.07 SS G_CDS: -4.68 Total: 0.39 kcal Atomic # 6 Polarization: 10.99 SS G_CDS: -1.38 Total: 9.61 kcal Atomic # 7 Polarization: -50.68 SS G_CDS: -0.34 Total: -51.02 kcal Atomic # 8 Polarization: -18.89 SS G_CDS: 0.09 Total: -18.80 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -32.23 -7.33 -39.55 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259338670.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.823 kcal (2) G-P(sol) polarization free energy of solvation -32.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.553 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds