Wall clock time and date at job start Mon Mar 30 2020 03:23:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34262 * 125.58527 * 2 1 4 4 O 1.21578 * 122.99479 * 0.02562 * 3 2 1 5 5 N 1.33943 * 113.96287 * 179.91421 * 3 2 1 6 6 C 1.37187 * 125.41047 * 180.02562 * 5 3 2 7 7 H 1.08002 * 120.00198 * 354.23834 * 6 5 3 8 8 C 1.38884 * 120.00329 * 174.23012 * 6 5 3 9 9 N 1.31478 * 119.99332 * 6.95725 * 8 6 5 10 10 Si 1.86797 * 120.00274 * 186.95574 * 8 6 5 11 11 H 1.48500 * 109.47203 * 0.02562 * 10 8 6 12 12 H 1.48504 * 109.46899 * 120.00112 * 10 8 6 13 13 H 1.48503 * 109.47087 * 239.99749 * 10 8 6 14 14 C 1.47057 * 109.18200 * 0.08718 * 5 3 2 15 15 C 1.47060 * 125.41126 * 180.02562 * 2 1 3 16 16 H 1.08995 * 110.54678 * 298.73684 * 15 2 1 17 17 C 1.53001 * 110.54635 * 61.40411 * 15 2 1 18 18 C 1.53781 * 113.61287 * 197.46034 * 17 15 2 19 19 C 1.54055 * 86.98182 * 140.02127 * 18 17 15 20 20 C 1.53776 * 87.07754 * 334.56707 * 19 18 17 21 21 H 1.09000 * 109.47503 * 269.93596 * 1 2 3 22 22 H 1.08995 * 109.46792 * 29.94066 * 1 2 3 23 23 H 1.09004 * 109.46619 * 149.93886 * 1 2 3 24 24 H 0.97008 * 119.99736 * 180.02562 * 9 8 6 25 25 H 1.09002 * 110.54891 * 241.40555 * 14 5 3 26 26 H 1.08997 * 110.55180 * 118.58965 * 14 5 3 27 27 H 1.09000 * 112.85030 * 66.26434 * 17 15 2 28 28 H 1.08995 * 113.61303 * 254.61616 * 18 17 15 29 29 H 1.09003 * 113.61223 * 25.52086 * 18 17 15 30 30 H 1.09003 * 113.61337 * 220.02163 * 19 18 17 31 31 H 1.08997 * 113.68874 * 89.13420 * 19 18 17 32 32 H 1.09002 * 113.61784 * 270.88154 * 20 19 18 33 33 H 1.09006 * 113.68809 * 139.98792 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2463 1.0919 0.0000 4 8 1.8023 2.2237 0.0005 5 7 3.5583 0.8220 0.0018 6 6 4.5621 1.7571 0.0027 7 1 4.3231 2.8061 -0.0919 8 6 5.8857 1.3548 0.1256 9 7 6.1887 0.0756 0.1033 10 14 7.2354 2.6312 0.3223 11 1 6.6363 3.9899 0.3172 12 1 7.9441 2.4079 1.6081 13 1 8.1988 2.5101 -0.8014 14 6 3.7517 -0.6357 0.0012 15 6 2.3171 -1.1986 -0.0005 16 1 2.1389 -1.7951 0.8941 17 6 2.0694 -2.0330 -1.2588 18 6 2.5805 -3.4793 -1.1494 19 6 1.2977 -3.9024 -1.8901 20 6 0.6507 -2.6209 -1.3386 21 1 -0.3634 -0.0011 1.0276 22 1 -0.3633 0.8905 -0.5129 23 1 -0.3633 -0.8895 -0.5148 24 1 7.1132 -0.2054 0.1895 25 1 4.2849 -0.9513 0.8980 26 1 4.2876 -0.9503 -0.8943 27 1 2.3841 -1.5266 -2.1713 28 1 3.4939 -3.6635 -1.7148 29 1 2.6343 -3.8469 -0.1246 30 1 0.8516 -4.8183 -1.5026 31 1 1.4002 -3.9077 -2.9753 32 1 0.1780 -2.7544 -0.3656 33 1 0.0068 -2.1118 -2.0559 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259338670.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:11 Heat of formation + Delta-G solvation = -4.229303 kcal Electronic energy + Delta-G solvation = -16107.377761 eV Core-core repulsion = 13554.822204 eV Total energy + Delta-G solvation = -2552.555557 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.93501 -39.40861 -36.91546 -35.96128 -33.51720 -30.82219 -28.29393 -26.72821 -26.40394 -25.34961 -22.57118 -20.99483 -20.38046 -19.33750 -17.57066 -17.13534 -16.90080 -16.47411 -15.83113 -15.18827 -15.01870 -14.79660 -14.49474 -13.72217 -13.50943 -13.35859 -13.18597 -12.95206 -12.82836 -12.62194 -12.53307 -12.25157 -12.11912 -11.50551 -11.22366 -11.11584 -10.92316 -10.76790 -9.99463 -9.31931 -8.33053 -5.87517 1.38967 1.40742 1.54844 1.99770 2.31355 2.41427 3.16710 3.53243 3.59603 3.79397 3.86949 4.02669 4.16723 4.32203 4.42149 4.47445 4.73394 4.83386 4.93807 4.95127 4.98011 5.04613 5.14793 5.20964 5.25355 5.39074 5.43181 5.53132 5.66379 6.04387 6.28884 6.67584 7.22112 7.45090 8.19143 8.75429 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.033713 B = 0.009314 C = 0.007538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.328924 B = 3005.473478 C = 3713.642078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.118 3.882 2 N -0.639 5.639 3 C 0.633 3.367 4 O -0.675 6.675 5 N -0.491 5.491 6 C -0.321 4.321 7 H 0.075 0.925 8 C -0.009 4.009 9 N -0.908 5.908 10 Si 0.998 3.002 11 H -0.275 1.275 12 H -0.269 1.269 13 H -0.269 1.269 14 C 0.147 3.853 15 C 0.130 3.870 16 H 0.097 0.903 17 C -0.121 4.121 18 C -0.128 4.128 19 C -0.128 4.128 20 C -0.129 4.129 21 H 0.054 0.946 22 H 0.050 0.950 23 H 0.108 0.892 24 H 0.273 0.727 25 H 0.062 0.938 26 H 0.063 0.937 27 H 0.066 0.934 28 H 0.063 0.937 29 H 0.093 0.907 30 H 0.086 0.914 31 H 0.080 0.920 32 H 0.096 0.904 33 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.944 -11.708 -1.715 13.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.023 4.023 2 N -0.378 5.378 3 C 0.336 3.664 4 O -0.563 6.563 5 N -0.214 5.214 6 C -0.449 4.449 7 H 0.093 0.907 8 C -0.208 4.208 9 N -0.548 5.548 10 Si 0.821 3.179 11 H -0.200 1.200 12 H -0.194 1.194 13 H -0.194 1.194 14 C 0.024 3.976 15 C 0.026 3.974 16 H 0.114 0.886 17 C -0.141 4.141 18 C -0.166 4.166 19 C -0.165 4.165 20 C -0.166 4.166 21 H 0.072 0.928 22 H 0.069 0.931 23 H 0.126 0.874 24 H 0.083 0.917 25 H 0.080 0.920 26 H 0.081 0.919 27 H 0.084 0.916 28 H 0.082 0.918 29 H 0.112 0.888 30 H 0.105 0.895 31 H 0.099 0.901 32 H 0.115 0.885 33 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -7.010 -11.184 -1.698 13.308 hybrid contribution 0.932 0.963 0.058 1.342 sum -6.077 -10.221 -1.640 12.004 Atomic orbital electron populations 1.21593 0.75510 1.03426 1.01791 1.47101 1.06235 1.04932 1.79522 1.16361 0.82813 0.84732 0.82531 1.90644 1.77496 1.23395 1.64734 1.43011 1.03016 1.06960 1.68441 1.19449 0.85693 0.88699 1.51013 0.90700 1.26001 0.99311 0.99347 0.96189 1.70001 1.20078 1.14870 1.49831 0.84808 0.77179 0.77478 0.78420 1.20024 1.19403 1.19444 1.22038 0.93606 0.79683 1.02307 1.22305 0.88680 0.87040 0.99393 0.88567 1.22872 0.99722 0.95504 0.96003 1.22960 0.98374 0.93307 1.01933 1.22803 0.95743 0.97815 1.00128 1.22988 0.94623 0.96808 1.02171 0.92759 0.93117 0.87412 0.91704 0.91967 0.91912 0.91588 0.91820 0.88836 0.89506 0.90136 0.88522 0.91169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 3.72 10.81 127.77 1.38 5.10 16 2 N -0.64 -26.68 3.10 -838.82 -2.60 -29.27 16 3 C 0.63 35.02 8.25 179.48 1.48 36.50 16 4 O -0.67 -42.45 17.03 -3.96 -0.07 -42.52 16 5 N -0.49 -27.91 3.07 -650.76 -2.00 -29.91 16 6 C -0.32 -19.42 9.92 84.01 0.83 -18.59 16 7 H 0.08 4.79 7.68 -2.91 -0.02 4.77 16 8 C -0.01 -0.48 5.48 84.90 0.47 -0.01 16 9 N -0.91 -49.05 10.40 21.66 0.23 -48.83 16 10 Si 1.00 43.90 29.56 68.60 2.03 45.93 16 11 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 12 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 13 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 14 C 0.15 6.94 5.30 86.65 0.46 7.40 16 15 C 0.13 4.70 3.22 45.26 0.15 4.84 16 16 H 0.10 3.01 8.04 -2.39 -0.02 2.99 16 17 C -0.12 -3.50 3.14 -10.27 -0.03 -3.53 16 18 C -0.13 -2.91 7.66 31.21 0.24 -2.67 16 19 C -0.13 -2.30 8.09 31.21 0.25 -2.04 16 20 C -0.13 -2.67 5.34 31.12 0.17 -2.50 16 21 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 22 H 0.05 1.75 7.93 -2.39 -0.02 1.74 16 23 H 0.11 2.50 4.53 -2.39 -0.01 2.49 16 24 H 0.27 13.72 8.31 -92.70 -0.77 12.95 16 25 H 0.06 3.07 7.38 -2.39 -0.02 3.06 16 26 H 0.06 3.10 7.22 -2.39 -0.02 3.08 16 27 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 28 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 29 H 0.09 1.93 8.03 -2.39 -0.02 1.91 16 30 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.10 1.74 7.53 -2.39 -0.02 1.72 16 33 H 0.07 1.42 7.73 -2.38 -0.02 1.40 16 Total: -1.00 -72.90 266.77 4.07 -68.83 By element: Atomic # 1 Polarization: 10.18 SS G_CDS: 1.09 Total: 11.27 kcal Atomic # 6 Polarization: 19.10 SS G_CDS: 5.39 Total: 24.50 kcal Atomic # 7 Polarization: -103.64 SS G_CDS: -4.37 Total: -108.01 kcal Atomic # 8 Polarization: -42.45 SS G_CDS: -0.07 Total: -42.52 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.93 kcal Total: -72.90 4.07 -68.83 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259338670.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.603 kcal (2) G-P(sol) polarization free energy of solvation -72.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds