Wall clock time and date at job start Mon Mar 30 2020 03:23:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.33950 * 125.41339 * 2 1 4 4 O 1.21584 * 123.03611 * 0.02562 * 3 2 1 5 5 N 1.33946 * 113.91589 * 179.97438 * 3 2 1 6 6 C 1.37190 * 125.40749 * 179.73144 * 5 3 2 7 7 H 1.07997 * 119.99964 * 354.04255 * 6 5 3 8 8 C 1.38879 * 119.99835 * 174.03885 * 6 5 3 9 9 N 1.31475 * 120.00086 * 6.90632 * 8 6 5 10 10 Si 1.86805 * 119.99933 * 186.90358 * 8 6 5 11 11 H 1.48497 * 109.47038 * 0.02562 * 10 8 6 12 12 H 1.48501 * 109.46871 * 119.99985 * 10 8 6 13 13 H 1.48494 * 109.47205 * 239.99943 * 10 8 6 14 14 C 1.47050 * 109.18016 * 359.97438 * 5 3 2 15 15 C 1.47058 * 125.40727 * 179.97438 * 2 1 3 16 16 H 1.09000 * 110.54562 * 61.26214 * 15 2 1 17 17 C 1.52998 * 110.55185 * 298.59746 * 15 2 1 18 18 C 1.53776 * 113.61656 * 160.59158 * 17 15 2 19 19 C 1.53953 * 87.02076 * 220.04548 * 18 17 15 20 20 C 1.53775 * 113.61513 * 62.97978 * 17 15 2 21 21 H 1.08999 * 109.46968 * 359.97438 * 1 2 3 22 22 H 1.09004 * 109.47256 * 119.97948 * 1 2 3 23 23 H 1.08996 * 109.46888 * 239.98097 * 1 2 3 24 24 H 0.97001 * 120.00082 * 180.02562 * 9 8 6 25 25 H 1.09001 * 110.55394 * 118.59488 * 14 5 3 26 26 H 1.09000 * 110.54742 * 241.40381 * 14 5 3 27 27 H 1.09007 * 112.84610 * 291.79020 * 17 15 2 28 28 H 1.09007 * 113.61413 * 334.56524 * 18 17 15 29 29 H 1.08998 * 113.61633 * 105.46853 * 18 17 15 30 30 H 1.09001 * 113.53819 * 270.81185 * 19 18 17 31 31 H 1.09001 * 113.74213 * 139.93916 * 19 18 17 32 32 H 1.09004 * 113.62045 * 254.52894 * 20 17 15 33 33 H 1.09004 * 113.61510 * 25.34986 * 20 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2412 1.0917 0.0000 4 8 1.7946 2.2225 0.0005 5 7 3.5538 0.8247 0.0005 6 6 4.5556 1.7620 -0.0046 7 1 4.3143 2.8097 -0.1066 8 6 5.8800 1.3635 0.1215 9 7 6.1858 0.0848 0.1092 10 14 7.2270 2.6442 0.3086 11 1 6.6250 4.0016 0.2929 12 1 7.9359 2.4324 1.5961 13 1 8.1907 2.5165 -0.8140 14 6 3.7504 -0.6326 0.0016 15 6 2.3171 -1.1986 0.0005 16 1 2.1387 -1.7951 -0.8941 17 6 2.0694 -2.0331 1.2587 18 6 2.5375 -3.4924 1.1322 19 6 1.2575 -3.8847 1.8923 20 6 0.6365 -2.5816 1.3619 21 1 -0.3633 1.0277 0.0005 22 1 -0.3634 -0.5135 -0.8902 23 1 -0.3633 -0.5141 0.8898 24 1 7.1108 -0.1935 0.1976 25 1 4.2859 -0.9472 -0.8941 26 1 4.2854 -0.9458 0.8981 27 1 2.4150 -1.5409 2.1679 28 1 2.5635 -3.8550 0.1045 29 1 3.4549 -3.7058 1.6807 30 1 1.3817 -3.9000 2.9751 31 1 0.7776 -4.7849 1.5085 32 1 0.0213 -2.0608 2.0958 33 1 0.1412 -2.6934 0.3974 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259338678.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:13 Heat of formation + Delta-G solvation = 14.709032 kcal Electronic energy + Delta-G solvation = -16117.051271 eV Core-core repulsion = 13565.316942 eV Total energy + Delta-G solvation = -2551.734329 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.21601 -38.07933 -34.87159 -34.16649 -31.52932 -29.15658 -26.61873 -25.32815 -24.99076 -23.74645 -20.98988 -19.29191 -19.08771 -17.32122 -15.87951 -15.57486 -15.05953 -14.86803 -14.18523 -13.70451 -13.29375 -13.01836 -12.82349 -12.28474 -12.10506 -11.87473 -11.71521 -11.41086 -11.30823 -11.07557 -10.84684 -10.40272 -10.29727 -10.23337 -10.06706 -9.77665 -9.02029 -8.72787 -7.96101 -7.57704 -6.23850 -3.69921 3.22083 3.29632 3.35929 3.70518 4.29593 4.34831 4.82053 4.87732 4.92660 5.09848 5.30384 5.39779 5.57914 5.67737 5.73434 5.80167 5.89705 5.94126 6.02324 6.03585 6.18796 6.19730 6.24815 6.46993 6.72506 6.85270 7.08339 7.34166 7.59165 7.77885 8.35001 8.71384 9.30990 9.50527 10.25844 10.86473 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.032896 B = 0.009425 C = 0.007622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.973691 B = 2969.958675 C = 3672.579282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.125 3.875 2 N -0.644 5.644 3 C 0.650 3.350 4 O -0.629 6.629 5 N -0.472 5.472 6 C -0.274 4.274 7 H 0.102 0.898 8 C 0.022 3.978 9 N -0.901 5.901 10 Si 0.930 3.070 11 H -0.270 1.270 12 H -0.282 1.282 13 H -0.283 1.283 14 C 0.141 3.859 15 C 0.121 3.879 16 H 0.070 0.930 17 C -0.111 4.111 18 C -0.130 4.130 19 C -0.143 4.143 20 C -0.134 4.134 21 H 0.074 0.926 22 H 0.043 0.957 23 H 0.050 0.950 24 H 0.265 0.735 25 H 0.074 0.926 26 H 0.084 0.916 27 H 0.091 0.909 28 H 0.081 0.919 29 H 0.069 0.931 30 H 0.076 0.924 31 H 0.062 0.938 32 H 0.064 0.936 33 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.583 -9.432 1.717 11.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.018 4.018 2 N -0.384 5.384 3 C 0.353 3.647 4 O -0.513 6.513 5 N -0.195 5.195 6 C -0.401 4.401 7 H 0.120 0.880 8 C -0.179 4.179 9 N -0.542 5.542 10 Si 0.758 3.242 11 H -0.194 1.194 12 H -0.208 1.208 13 H -0.209 1.209 14 C 0.016 3.984 15 C 0.016 3.984 16 H 0.088 0.912 17 C -0.131 4.131 18 C -0.168 4.168 19 C -0.180 4.180 20 C -0.171 4.171 21 H 0.093 0.907 22 H 0.061 0.939 23 H 0.069 0.931 24 H 0.076 0.924 25 H 0.092 0.908 26 H 0.102 0.898 27 H 0.109 0.891 28 H 0.099 0.901 29 H 0.087 0.913 30 H 0.094 0.906 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -6.624 -8.831 1.719 11.173 hybrid contribution 0.785 0.310 0.085 0.848 sum -5.839 -8.521 1.804 10.486 Atomic orbital electron populations 1.21207 0.78312 1.02602 0.99654 1.46881 1.04848 1.05962 1.80686 1.15841 0.82393 0.84012 0.82461 1.90714 1.76507 1.21236 1.62845 1.42786 1.02836 1.05500 1.68384 1.19469 0.84120 0.89061 1.47496 0.88016 1.25169 0.97952 0.97044 0.97719 1.69896 1.19032 1.13850 1.51452 0.85783 0.80289 0.80458 0.77717 1.19408 1.20798 1.20898 1.22119 0.90573 0.81618 1.04051 1.22176 0.92154 0.87700 0.96373 0.91241 1.22873 0.96358 0.94877 0.98987 1.22898 0.97598 0.95574 1.00750 1.22860 0.97648 0.97551 0.99990 1.22958 0.96596 0.96529 1.01027 0.90685 0.93875 0.93135 0.92446 0.90762 0.89819 0.89067 0.90069 0.91258 0.90564 0.91888 0.91773 0.90285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 2.08 10.13 59.85 0.61 2.69 16 2 N -0.64 -13.52 3.09 -179.11 -0.55 -14.07 16 3 C 0.65 17.33 8.24 -88.40 -0.73 16.60 16 4 O -0.63 -18.82 16.78 5.29 0.09 -18.73 16 5 N -0.47 -12.88 3.07 -119.61 -0.37 -13.25 16 6 C -0.27 -7.93 9.92 -14.92 -0.15 -8.08 16 7 H 0.10 3.05 7.68 -52.49 -0.40 2.64 16 8 C 0.02 0.58 5.48 -17.47 -0.10 0.49 16 9 N -0.90 -24.20 10.40 55.49 0.58 -23.62 16 10 Si 0.93 21.27 29.56 -169.99 -5.02 16.25 16 11 H -0.27 -6.18 7.11 56.52 0.40 -5.77 16 12 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 13 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 14 C 0.14 3.25 5.30 -3.17 -0.02 3.23 16 15 C 0.12 2.26 3.27 -67.05 -0.22 2.04 16 16 H 0.07 1.18 8.00 -51.93 -0.42 0.76 16 17 C -0.11 -1.72 3.16 -89.81 -0.28 -2.00 16 18 C -0.13 -1.67 7.65 -25.83 -0.20 -1.87 16 19 C -0.14 -1.60 8.09 -25.83 -0.21 -1.81 16 20 C -0.13 -1.68 5.43 -25.92 -0.14 -1.82 16 21 H 0.07 1.34 7.52 -51.93 -0.39 0.95 16 22 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 23 H 0.05 0.72 5.79 -51.93 -0.30 0.42 16 24 H 0.27 6.75 8.31 -40.82 -0.34 6.41 16 25 H 0.07 1.79 7.65 -51.93 -0.40 1.39 16 26 H 0.08 2.01 6.95 -51.93 -0.36 1.65 16 27 H 0.09 1.58 8.13 -51.92 -0.42 1.16 16 28 H 0.08 0.98 8.00 -51.92 -0.42 0.57 16 29 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 31 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.06 0.79 7.44 -51.93 -0.39 0.41 16 33 H 0.08 0.94 7.77 -51.93 -0.40 0.54 16 LS Contribution 266.68 15.07 4.02 4.02 Total: -1.00 -32.07 266.68 -7.41 -39.48 By element: Atomic # 1 Polarization: 5.18 SS G_CDS: -4.72 Total: 0.46 kcal Atomic # 6 Polarization: 10.91 SS G_CDS: -1.43 Total: 9.47 kcal Atomic # 7 Polarization: -50.60 SS G_CDS: -0.34 Total: -50.95 kcal Atomic # 8 Polarization: -18.82 SS G_CDS: 0.09 Total: -18.73 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -32.07 -7.41 -39.48 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259338678.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.190 kcal (2) G-P(sol) polarization free energy of solvation -32.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.481 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds