Wall clock time and date at job start Mon Mar 30 2020 03:23:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.33950 * 125.41339 * 2 1 4 4 O 1.21584 * 123.03611 * 0.02562 * 3 2 1 5 5 N 1.33946 * 113.91589 * 179.97438 * 3 2 1 6 6 C 1.37190 * 125.40749 * 179.73144 * 5 3 2 7 7 H 1.07997 * 119.99964 * 354.04255 * 6 5 3 8 8 C 1.38879 * 119.99835 * 174.03885 * 6 5 3 9 9 N 1.31475 * 120.00086 * 6.90632 * 8 6 5 10 10 Si 1.86805 * 119.99933 * 186.90358 * 8 6 5 11 11 H 1.48497 * 109.47038 * 0.02562 * 10 8 6 12 12 H 1.48501 * 109.46871 * 119.99985 * 10 8 6 13 13 H 1.48494 * 109.47205 * 239.99943 * 10 8 6 14 14 C 1.47050 * 109.18016 * 359.97438 * 5 3 2 15 15 C 1.47058 * 125.40727 * 179.97438 * 2 1 3 16 16 H 1.09000 * 110.54562 * 61.26214 * 15 2 1 17 17 C 1.52998 * 110.55185 * 298.59746 * 15 2 1 18 18 C 1.53776 * 113.61656 * 160.59158 * 17 15 2 19 19 C 1.53953 * 87.02076 * 220.04548 * 18 17 15 20 20 C 1.53775 * 113.61513 * 62.97978 * 17 15 2 21 21 H 1.08999 * 109.46968 * 359.97438 * 1 2 3 22 22 H 1.09004 * 109.47256 * 119.97948 * 1 2 3 23 23 H 1.08996 * 109.46888 * 239.98097 * 1 2 3 24 24 H 0.97001 * 120.00082 * 180.02562 * 9 8 6 25 25 H 1.09001 * 110.55394 * 118.59488 * 14 5 3 26 26 H 1.09000 * 110.54742 * 241.40381 * 14 5 3 27 27 H 1.09007 * 112.84610 * 291.79020 * 17 15 2 28 28 H 1.09007 * 113.61413 * 334.56524 * 18 17 15 29 29 H 1.08998 * 113.61633 * 105.46853 * 18 17 15 30 30 H 1.09001 * 113.53819 * 270.81185 * 19 18 17 31 31 H 1.09001 * 113.74213 * 139.93916 * 19 18 17 32 32 H 1.09004 * 113.62045 * 254.52894 * 20 17 15 33 33 H 1.09004 * 113.61510 * 25.34986 * 20 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2412 1.0917 0.0000 4 8 1.7946 2.2225 0.0005 5 7 3.5538 0.8247 0.0005 6 6 4.5556 1.7620 -0.0046 7 1 4.3143 2.8097 -0.1066 8 6 5.8800 1.3635 0.1215 9 7 6.1858 0.0848 0.1092 10 14 7.2270 2.6442 0.3086 11 1 6.6250 4.0016 0.2929 12 1 7.9359 2.4324 1.5961 13 1 8.1907 2.5165 -0.8140 14 6 3.7504 -0.6326 0.0016 15 6 2.3171 -1.1986 0.0005 16 1 2.1387 -1.7951 -0.8941 17 6 2.0694 -2.0331 1.2587 18 6 2.5375 -3.4924 1.1322 19 6 1.2575 -3.8847 1.8923 20 6 0.6365 -2.5816 1.3619 21 1 -0.3633 1.0277 0.0005 22 1 -0.3634 -0.5135 -0.8902 23 1 -0.3633 -0.5141 0.8898 24 1 7.1108 -0.1935 0.1976 25 1 4.2859 -0.9472 -0.8941 26 1 4.2854 -0.9458 0.8981 27 1 2.4150 -1.5409 2.1679 28 1 2.5635 -3.8550 0.1045 29 1 3.4549 -3.7058 1.6807 30 1 1.3817 -3.9000 2.9751 31 1 0.7776 -4.7849 1.5085 32 1 0.0213 -2.0608 2.0958 33 1 0.1412 -2.6934 0.3974 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259338678.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:13 Heat of formation + Delta-G solvation = -5.619132 kcal Electronic energy + Delta-G solvation = -16117.932766 eV Core-core repulsion = 13565.316942 eV Total energy + Delta-G solvation = -2552.615824 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.95158 -39.39936 -36.91905 -35.96460 -33.51512 -30.81691 -28.28589 -26.72067 -26.37689 -25.34762 -22.59462 -20.98334 -20.34715 -19.34482 -17.54106 -17.16059 -16.91032 -16.45598 -15.84156 -15.18309 -15.00361 -14.80101 -14.49405 -13.69129 -13.51508 -13.29532 -13.18439 -12.94417 -12.93397 -12.59822 -12.54246 -12.19503 -12.11918 -11.51402 -11.21800 -11.13797 -10.90823 -10.79065 -9.99133 -9.31887 -8.32861 -5.87319 1.38968 1.40631 1.54754 2.00578 2.31983 2.41435 3.16952 3.53700 3.60487 3.82760 3.88227 4.03601 4.12887 4.34628 4.42997 4.46060 4.75711 4.83322 4.95119 4.96347 4.98521 5.05443 5.15889 5.20890 5.25839 5.39043 5.44292 5.52687 5.66963 6.04224 6.29398 6.68027 7.22480 7.45476 8.19501 8.75672 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.032896 B = 0.009425 C = 0.007622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.973691 B = 2969.958675 C = 3672.579282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.120 3.880 2 N -0.638 5.638 3 C 0.634 3.366 4 O -0.675 6.675 5 N -0.492 5.492 6 C -0.321 4.321 7 H 0.075 0.925 8 C -0.009 4.009 9 N -0.908 5.908 10 Si 0.997 3.003 11 H -0.275 1.275 12 H -0.270 1.270 13 H -0.269 1.269 14 C 0.147 3.853 15 C 0.131 3.869 16 H 0.097 0.903 17 C -0.121 4.121 18 C -0.127 4.127 19 C -0.129 4.129 20 C -0.125 4.125 21 H 0.055 0.945 22 H 0.077 0.923 23 H 0.080 0.920 24 H 0.273 0.727 25 H 0.058 0.942 26 H 0.067 0.933 27 H 0.065 0.935 28 H 0.094 0.906 29 H 0.063 0.937 30 H 0.079 0.921 31 H 0.086 0.914 32 H 0.067 0.933 33 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.010 -11.532 1.819 13.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.022 4.022 2 N -0.377 5.377 3 C 0.337 3.663 4 O -0.563 6.563 5 N -0.215 5.215 6 C -0.448 4.448 7 H 0.093 0.907 8 C -0.209 4.209 9 N -0.548 5.548 10 Si 0.821 3.179 11 H -0.200 1.200 12 H -0.195 1.195 13 H -0.194 1.194 14 C 0.023 3.977 15 C 0.027 3.973 16 H 0.115 0.885 17 C -0.141 4.141 18 C -0.165 4.165 19 C -0.166 4.166 20 C -0.163 4.163 21 H 0.074 0.926 22 H 0.096 0.904 23 H 0.098 0.902 24 H 0.083 0.917 25 H 0.076 0.924 26 H 0.085 0.915 27 H 0.083 0.917 28 H 0.112 0.888 29 H 0.082 0.918 30 H 0.098 0.902 31 H 0.105 0.895 32 H 0.085 0.915 33 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -7.076 -11.009 1.821 13.213 hybrid contribution 0.941 0.932 0.043 1.325 sum -6.135 -10.077 1.864 11.944 Atomic orbital electron populations 1.21534 0.75487 1.02424 1.02714 1.47026 1.06340 1.04946 1.79353 1.16272 0.82832 0.84760 0.82481 1.90647 1.77326 1.23474 1.64882 1.43020 1.03058 1.06925 1.68510 1.19448 0.85731 0.88735 1.50907 0.90678 1.25996 0.99297 0.99354 0.96206 1.69996 1.19979 1.14953 1.49885 0.84814 0.77217 0.77500 0.78400 1.20007 1.19500 1.19386 1.22044 0.93634 0.79721 1.02313 1.22296 0.88609 0.87000 0.99400 0.88503 1.22861 0.99677 0.95561 0.96000 1.22939 0.98457 0.93224 1.01877 1.22792 0.95989 0.97747 1.00071 1.22969 0.94472 0.96736 1.02102 0.92584 0.90442 0.90183 0.91721 0.92414 0.91482 0.91687 0.88796 0.91799 0.90228 0.89519 0.91461 0.88695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 3.73 10.13 127.77 1.29 5.02 16 2 N -0.64 -26.48 3.09 -839.30 -2.59 -29.07 16 3 C 0.63 34.92 8.24 179.57 1.48 36.40 16 4 O -0.68 -42.26 16.78 -3.98 -0.07 -42.32 16 5 N -0.49 -27.91 3.07 -651.06 -2.00 -29.91 16 6 C -0.32 -19.38 9.92 84.01 0.83 -18.55 16 7 H 0.08 4.79 7.68 -2.91 -0.02 4.77 16 8 C -0.01 -0.48 5.48 84.90 0.47 -0.02 16 9 N -0.91 -49.11 10.40 21.65 0.23 -48.89 16 10 Si 1.00 43.92 29.56 68.60 2.03 45.95 16 11 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 12 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 13 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 14 C 0.15 6.91 5.30 86.65 0.46 7.37 16 15 C 0.13 4.73 3.27 45.26 0.15 4.88 16 16 H 0.10 3.01 8.00 -2.39 -0.02 2.99 16 17 C -0.12 -3.53 3.16 -10.27 -0.03 -3.57 16 18 C -0.13 -2.91 7.65 31.18 0.24 -2.67 16 19 C -0.13 -2.36 8.09 31.18 0.25 -2.11 16 20 C -0.13 -2.68 5.43 31.12 0.17 -2.51 16 21 H 0.06 1.98 7.52 -2.39 -0.02 1.96 16 22 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 23 H 0.08 2.03 5.79 -2.39 -0.01 2.02 16 24 H 0.27 13.73 8.31 -92.71 -0.77 12.96 16 25 H 0.06 2.84 7.65 -2.39 -0.02 2.83 16 26 H 0.07 3.32 6.95 -2.39 -0.02 3.31 16 27 H 0.06 2.24 8.13 -2.38 -0.02 2.22 16 28 H 0.09 1.93 8.00 -2.38 -0.02 1.91 16 29 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 30 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.07 1.42 7.44 -2.39 -0.02 1.40 16 33 H 0.09 1.77 7.77 -2.39 -0.02 1.76 16 Total: -1.00 -72.55 266.68 3.99 -68.56 By element: Atomic # 1 Polarization: 10.35 SS G_CDS: 1.09 Total: 11.44 kcal Atomic # 6 Polarization: 18.94 SS G_CDS: 5.31 Total: 24.25 kcal Atomic # 7 Polarization: -103.51 SS G_CDS: -4.37 Total: -107.87 kcal Atomic # 8 Polarization: -42.26 SS G_CDS: -0.07 Total: -42.32 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.95 kcal Total: -72.55 3.99 -68.56 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259338678.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.940 kcal (2) G-P(sol) polarization free energy of solvation -72.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds