Wall clock time and date at job start Mon Mar 30 2020 03:24:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.37102 * 120.00093 * 2 1 4 4 H 1.07998 * 119.99963 * 208.56389 * 3 2 1 5 5 C 1.38946 * 119.99642 * 28.56479 * 3 2 1 6 6 N 1.31416 * 120.00367 * 20.79342 * 5 3 2 7 7 Si 1.86804 * 119.99831 * 200.79725 * 5 3 2 8 8 H 1.48501 * 109.47106 * 359.97438 * 7 5 3 9 9 H 1.48497 * 109.47014 * 119.99990 * 7 5 3 10 10 H 1.48497 * 109.46999 * 239.99748 * 7 5 3 11 11 C 1.34782 * 119.99891 * 180.02562 * 2 1 3 12 12 O 1.21286 * 120.00107 * 6.15825 * 11 2 1 13 13 C 1.50698 * 119.99621 * 186.15892 * 11 2 1 14 14 C 1.53004 * 115.54793 * 165.35214 * 13 11 2 15 15 N 1.46899 * 115.54914 * 179.91207 * 14 13 11 16 16 C 1.53004 * 117.49474 * 325.57465 * 14 13 11 17 17 C 1.52999 * 117.50044 * 34.23859 * 14 13 11 18 18 C 1.53004 * 117.52048 * 311.04767 * 13 11 2 19 19 C 1.52999 * 59.99883 * 107.48588 * 18 13 11 20 20 H 1.09002 * 109.47289 * 174.26427 * 1 2 3 21 21 H 1.09003 * 109.47342 * 294.25977 * 1 2 3 22 22 H 1.08997 * 109.47436 * 54.26215 * 1 2 3 23 23 H 0.96993 * 119.99853 * 179.97438 * 6 5 3 24 24 H 1.00901 * 111.00044 * 179.97438 * 15 14 13 25 25 H 1.00896 * 111.00360 * 303.94981 * 15 14 13 26 26 H 1.08998 * 117.49549 * 215.00120 * 16 14 13 27 27 H 1.08993 * 117.50110 * 0.03042 * 16 14 13 28 28 H 1.08997 * 117.49526 * 359.97438 * 17 14 13 29 29 H 1.09002 * 117.49488 * 144.97964 * 17 14 13 30 30 H 1.08999 * 117.49739 * 214.97667 * 18 13 11 31 31 H 1.09005 * 117.49601 * 359.97438 * 18 13 11 32 32 H 1.09001 * 117.49398 * 252.51317 * 19 18 13 33 33 H 1.08998 * 117.49960 * 107.49069 * 19 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.1319 1.2442 -0.4472 5 6 1.5825 2.3174 0.5754 6 7 0.6159 2.1908 1.4567 7 14 2.1930 4.0166 0.0961 8 1 3.2800 3.8872 -0.9073 9 1 1.0728 4.7992 -0.4851 10 1 2.7117 4.7140 1.3001 11 6 2.1388 -1.1673 -0.0005 12 8 1.5377 -2.2145 -0.1137 13 6 3.6393 -1.1710 0.1395 14 6 4.2673 -2.5252 0.4756 15 7 5.7301 -2.5293 0.6102 16 6 3.4719 -3.4672 1.3816 17 6 3.6083 -3.7748 -0.1118 18 6 4.4360 -0.2277 -0.7640 19 6 4.2971 0.0784 0.7286 20 1 -0.3634 -1.0225 -0.1027 21 1 -0.3634 0.4222 0.9369 22 1 -0.3634 0.6002 -0.8341 23 1 0.2198 2.9797 1.8586 24 1 6.0702 -3.4530 0.8318 25 1 6.1710 -2.1719 -0.2241 26 1 4.0341 -4.0901 2.0773 27 1 2.5011 -3.1226 1.7377 28 1 2.7272 -3.6322 -0.7374 29 1 4.2603 -4.5998 -0.3988 30 1 5.4075 -0.5718 -1.1189 31 1 3.8749 0.3956 -1.4603 32 1 3.6445 0.9034 1.0145 33 1 5.1771 -0.0642 1.3557 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259516046.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:54 Heat of formation + Delta-G solvation = 58.994807 kcal Electronic energy + Delta-G solvation = -16369.538340 eV Core-core repulsion = 13819.724386 eV Total energy + Delta-G solvation = -2549.813954 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.84053 -36.98871 -35.61543 -33.97780 -31.43633 -30.39404 -26.40578 -25.35033 -22.99118 -22.03286 -21.26167 -20.04088 -18.53838 -17.47656 -15.77108 -15.36262 -14.81552 -14.41714 -13.86867 -13.74400 -13.40539 -13.32962 -12.48865 -12.13621 -11.96776 -11.36799 -11.21070 -11.11821 -10.81265 -10.69976 -10.54220 -10.39945 -10.22850 -9.91891 -9.43149 -9.11291 -9.02666 -8.23152 -7.89923 -7.56421 -6.34772 -3.99260 3.06963 3.19914 3.23004 3.67002 4.04395 4.28252 4.56430 4.85917 5.03927 5.09859 5.19997 5.43744 5.63609 5.85563 5.98745 6.08219 6.21586 6.25047 6.41915 6.59337 6.72888 6.80751 6.88700 6.95172 7.01699 7.22631 7.39637 7.47460 7.55285 7.67234 7.82953 8.34740 9.04420 9.50415 9.91655 10.60376 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.035787 B = 0.010592 C = 0.008897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.217218 B = 2642.839551 C = 3146.538926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.439 5.439 3 C -0.359 4.359 4 H 0.125 0.875 5 C 0.038 3.962 6 N -0.857 5.857 7 Si 0.911 3.089 8 H -0.265 1.265 9 H -0.280 1.280 10 H -0.280 1.280 11 C 0.500 3.500 12 O -0.603 6.603 13 C -0.096 4.096 14 C 0.103 3.897 15 N -0.807 5.807 16 C -0.158 4.158 17 C -0.213 4.213 18 C -0.173 4.173 19 C -0.167 4.167 20 H 0.050 0.950 21 H 0.088 0.912 22 H 0.035 0.965 23 H 0.269 0.731 24 H 0.339 0.661 25 H 0.340 0.660 26 H 0.079 0.921 27 H 0.104 0.896 28 H 0.124 0.876 29 H 0.070 0.930 30 H 0.082 0.918 31 H 0.106 0.894 32 H 0.158 0.842 33 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.359 -2.978 -2.231 7.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.156 5.156 3 C -0.486 4.486 4 H 0.142 0.858 5 C -0.168 4.168 6 N -0.493 5.493 7 Si 0.737 3.263 8 H -0.189 1.189 9 H -0.206 1.206 10 H -0.206 1.206 11 C 0.289 3.711 12 O -0.490 6.490 13 C -0.099 4.099 14 C 0.009 3.991 15 N -0.335 5.335 16 C -0.196 4.196 17 C -0.252 4.252 18 C -0.210 4.210 19 C -0.203 4.203 20 H 0.069 0.931 21 H 0.107 0.893 22 H 0.054 0.946 23 H 0.079 0.921 24 H 0.151 0.849 25 H 0.154 0.846 26 H 0.098 0.902 27 H 0.123 0.877 28 H 0.142 0.858 29 H 0.089 0.911 30 H 0.101 0.899 31 H 0.124 0.876 32 H 0.175 0.825 33 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 5.802 -2.805 -1.555 6.630 hybrid contribution 0.239 0.193 -0.915 0.965 sum 6.041 -2.613 -2.470 7.030 Atomic orbital electron populations 1.21625 0.81343 0.99560 1.03007 1.43334 1.05248 1.04508 1.62494 1.20433 1.04910 0.85775 1.37485 0.85810 1.25382 0.96874 1.00102 0.94483 1.69932 1.25729 1.30386 1.23287 0.86110 0.78991 0.82279 0.78878 1.18913 1.20572 1.20565 1.19059 0.87215 0.83696 0.81104 1.90416 1.69914 1.31475 1.57231 1.20307 0.91981 0.89742 1.07920 1.20252 0.85743 0.89106 1.03988 1.58421 1.03432 1.29591 1.42100 1.23025 1.01846 1.01713 0.93021 1.23945 1.05030 0.98507 0.97762 1.23027 0.99803 1.02771 0.95414 1.24250 1.02187 0.99950 0.93912 0.93107 0.89346 0.94640 0.92096 0.84865 0.84621 0.90235 0.87733 0.85769 0.91126 0.89948 0.87556 0.82452 0.89639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.15 9.62 59.84 0.58 2.73 16 2 N -0.44 -11.07 2.98 -122.20 -0.36 -11.44 16 3 C -0.36 -8.77 5.90 -14.93 -0.09 -8.86 16 4 H 0.13 2.84 3.06 -52.49 -0.16 2.68 16 5 C 0.04 0.93 5.08 -17.47 -0.09 0.84 16 6 N -0.86 -22.12 11.05 55.50 0.61 -21.51 16 7 Si 0.91 18.91 29.60 -169.99 -5.03 13.87 16 8 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 9 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 10 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 11 C 0.50 12.29 7.00 -10.98 -0.08 12.21 16 12 O -0.60 -15.53 11.47 5.55 0.06 -15.47 16 13 C -0.10 -2.01 2.47 -155.66 -0.38 -2.39 16 14 C 0.10 1.91 2.97 -131.60 -0.39 1.52 16 15 N -0.81 -12.11 9.05 0.75 0.01 -12.10 16 16 C -0.16 -3.00 9.52 -26.69 -0.25 -3.25 16 17 C -0.21 -3.91 9.50 -26.69 -0.25 -4.16 16 18 C -0.17 -3.21 8.84 -26.73 -0.24 -3.45 16 19 C -0.17 -3.36 8.80 -26.73 -0.24 -3.60 16 20 H 0.05 1.21 6.92 -51.93 -0.36 0.85 16 21 H 0.09 2.28 6.09 -51.93 -0.32 1.96 16 22 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 23 H 0.27 6.55 8.31 -40.82 -0.34 6.21 16 24 H 0.34 4.35 8.87 -39.29 -0.35 4.00 16 25 H 0.34 4.61 7.55 -39.29 -0.30 4.31 16 26 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 27 H 0.10 2.28 6.78 -51.93 -0.35 1.93 16 28 H 0.12 2.65 5.79 -51.93 -0.30 2.35 16 29 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 30 H 0.08 1.30 6.81 -51.93 -0.35 0.95 16 31 H 0.11 2.08 6.26 -51.93 -0.33 1.75 16 32 H 0.16 3.57 4.53 -51.93 -0.24 3.33 16 33 H 0.09 1.62 7.87 -51.93 -0.41 1.21 16 LS Contribution 258.44 15.07 3.89 3.89 Total: -1.00 -27.38 258.44 -6.11 -33.49 By element: Atomic # 1 Polarization: 21.54 SS G_CDS: -3.86 Total: 17.68 kcal Atomic # 6 Polarization: -6.99 SS G_CDS: -1.43 Total: -8.42 kcal Atomic # 7 Polarization: -45.31 SS G_CDS: 0.26 Total: -45.05 kcal Atomic # 8 Polarization: -15.53 SS G_CDS: 0.06 Total: -15.47 kcal Atomic # 14 Polarization: 18.91 SS G_CDS: -5.03 Total: 13.87 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -27.38 -6.11 -33.49 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259516046.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.482 kcal (2) G-P(sol) polarization free energy of solvation -27.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.487 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds