Wall clock time and date at job start Mon Mar 30 2020 03:24:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.37102 * 120.00093 * 2 1 4 4 H 1.07998 * 119.99963 * 208.56389 * 3 2 1 5 5 C 1.38946 * 119.99642 * 28.56479 * 3 2 1 6 6 N 1.31416 * 120.00367 * 20.79342 * 5 3 2 7 7 Si 1.86804 * 119.99831 * 200.79725 * 5 3 2 8 8 H 1.48501 * 109.47106 * 359.97438 * 7 5 3 9 9 H 1.48497 * 109.47014 * 119.99990 * 7 5 3 10 10 H 1.48497 * 109.46999 * 239.99748 * 7 5 3 11 11 C 1.34782 * 119.99891 * 180.02562 * 2 1 3 12 12 O 1.21286 * 120.00107 * 6.15825 * 11 2 1 13 13 C 1.50698 * 119.99621 * 186.15892 * 11 2 1 14 14 C 1.53004 * 115.54793 * 165.35214 * 13 11 2 15 15 N 1.46899 * 115.54914 * 179.91207 * 14 13 11 16 16 C 1.53004 * 117.49474 * 325.57465 * 14 13 11 17 17 C 1.52999 * 117.50044 * 34.23859 * 14 13 11 18 18 C 1.53004 * 117.52048 * 311.04767 * 13 11 2 19 19 C 1.52999 * 59.99883 * 107.48588 * 18 13 11 20 20 H 1.09002 * 109.47289 * 174.26427 * 1 2 3 21 21 H 1.09003 * 109.47342 * 294.25977 * 1 2 3 22 22 H 1.08997 * 109.47436 * 54.26215 * 1 2 3 23 23 H 0.96993 * 119.99853 * 179.97438 * 6 5 3 24 24 H 1.00901 * 111.00044 * 179.97438 * 15 14 13 25 25 H 1.00896 * 111.00360 * 303.94981 * 15 14 13 26 26 H 1.08998 * 117.49549 * 215.00120 * 16 14 13 27 27 H 1.08993 * 117.50110 * 0.03042 * 16 14 13 28 28 H 1.08997 * 117.49526 * 359.97438 * 17 14 13 29 29 H 1.09002 * 117.49488 * 144.97964 * 17 14 13 30 30 H 1.08999 * 117.49739 * 214.97667 * 18 13 11 31 31 H 1.09005 * 117.49601 * 359.97438 * 18 13 11 32 32 H 1.09001 * 117.49398 * 252.51317 * 19 18 13 33 33 H 1.08998 * 117.49960 * 107.49069 * 19 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.1319 1.2442 -0.4472 5 6 1.5825 2.3174 0.5754 6 7 0.6159 2.1908 1.4567 7 14 2.1930 4.0166 0.0961 8 1 3.2800 3.8872 -0.9073 9 1 1.0728 4.7992 -0.4851 10 1 2.7117 4.7140 1.3001 11 6 2.1388 -1.1673 -0.0005 12 8 1.5377 -2.2145 -0.1137 13 6 3.6393 -1.1710 0.1395 14 6 4.2673 -2.5252 0.4756 15 7 5.7301 -2.5293 0.6102 16 6 3.4719 -3.4672 1.3816 17 6 3.6083 -3.7748 -0.1118 18 6 4.4360 -0.2277 -0.7640 19 6 4.2971 0.0784 0.7286 20 1 -0.3634 -1.0225 -0.1027 21 1 -0.3634 0.4222 0.9369 22 1 -0.3634 0.6002 -0.8341 23 1 0.2198 2.9797 1.8586 24 1 6.0702 -3.4530 0.8318 25 1 6.1710 -2.1719 -0.2241 26 1 4.0341 -4.0901 2.0773 27 1 2.5011 -3.1226 1.7377 28 1 2.7272 -3.6322 -0.7374 29 1 4.2603 -4.5998 -0.3988 30 1 5.4075 -0.5718 -1.1189 31 1 3.8749 0.3956 -1.4603 32 1 3.6445 0.9034 1.0145 33 1 5.1771 -0.0642 1.3557 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259516046.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:54 Heat of formation + Delta-G solvation = 40.828224 kcal Electronic energy + Delta-G solvation = -16370.326102 eV Core-core repulsion = 13819.724386 eV Total energy + Delta-G solvation = -2550.601716 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.54877 -38.62089 -37.41661 -35.69747 -33.34519 -31.67877 -28.33845 -27.20354 -24.64736 -23.53476 -22.77991 -21.76357 -20.33194 -19.17109 -17.32269 -17.02963 -16.37740 -16.22285 -15.67791 -15.48799 -14.96746 -14.86520 -14.15334 -13.89102 -13.69615 -13.04568 -12.95177 -12.76611 -12.65166 -12.26163 -12.13184 -11.98518 -11.78534 -11.68556 -11.04161 -10.82099 -10.58513 -10.08658 -9.50952 -9.24101 -8.22001 -5.91260 1.40921 1.50808 1.62786 1.88841 2.31516 2.74760 2.92921 3.11711 3.47107 3.52007 3.73225 3.93698 4.15737 4.23082 4.46927 4.53352 4.67752 4.77883 4.80012 4.88072 4.99863 5.14414 5.20915 5.32076 5.37739 5.48510 5.54218 5.76651 5.94644 6.22969 6.44301 6.62851 7.15109 7.60012 8.01264 8.75580 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.035787 B = 0.010592 C = 0.008897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.217218 B = 2642.839551 C = 3146.538926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.455 5.455 3 C -0.367 4.367 4 H 0.141 0.859 5 C -0.006 4.006 6 N -0.894 5.894 7 Si 0.977 3.023 8 H -0.249 1.249 9 H -0.284 1.284 10 H -0.280 1.280 11 C 0.485 3.515 12 O -0.624 6.624 13 C -0.117 4.117 14 C 0.110 3.890 15 N -0.797 5.797 16 C -0.169 4.169 17 C -0.206 4.206 18 C -0.148 4.148 19 C -0.165 4.165 20 H 0.046 0.954 21 H 0.073 0.927 22 H 0.038 0.962 23 H 0.269 0.731 24 H 0.355 0.645 25 H 0.352 0.648 26 H 0.108 0.892 27 H 0.064 0.936 28 H 0.090 0.910 29 H 0.105 0.895 30 H 0.120 0.880 31 H 0.097 0.903 32 H 0.132 0.868 33 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.115 -2.809 -2.958 9.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.172 5.172 3 C -0.493 4.493 4 H 0.157 0.843 5 C -0.208 4.208 6 N -0.532 5.532 7 Si 0.801 3.199 8 H -0.172 1.172 9 H -0.210 1.210 10 H -0.205 1.205 11 C 0.275 3.725 12 O -0.513 6.513 13 C -0.121 4.121 14 C 0.016 3.984 15 N -0.328 5.328 16 C -0.206 4.206 17 C -0.246 4.246 18 C -0.185 4.185 19 C -0.201 4.201 20 H 0.065 0.935 21 H 0.091 0.909 22 H 0.057 0.943 23 H 0.079 0.921 24 H 0.170 0.830 25 H 0.168 0.832 26 H 0.126 0.874 27 H 0.083 0.917 28 H 0.108 0.892 29 H 0.123 0.877 30 H 0.139 0.861 31 H 0.115 0.885 32 H 0.149 0.851 33 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 8.582 -2.648 -2.293 9.269 hybrid contribution -0.661 0.078 -0.666 0.942 sum 7.921 -2.570 -2.960 8.837 Atomic orbital electron populations 1.21462 0.81948 0.99097 1.02291 1.43626 1.05362 1.05349 1.62880 1.20862 1.05535 0.85560 1.37361 0.84252 1.26220 0.97023 1.03472 0.94117 1.70046 1.27275 1.31301 1.24553 0.85097 0.78622 0.77510 0.78671 1.17210 1.21000 1.20537 1.19822 0.89175 0.83145 0.80358 1.90404 1.70960 1.32099 1.57868 1.20322 0.89890 0.91723 1.10137 1.20098 0.87577 0.87621 1.03151 1.58321 1.00819 1.30974 1.42716 1.22965 1.00707 1.02958 0.94010 1.23839 1.04378 0.99845 0.96562 1.23096 1.00602 1.00640 0.94133 1.24052 1.02066 0.98467 0.95523 0.93499 0.90884 0.94314 0.92090 0.82990 0.83226 0.87420 0.91718 0.89210 0.87704 0.86149 0.88528 0.85057 0.87945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 4.86 9.62 127.77 1.23 6.09 16 2 N -0.45 -23.40 2.98 -658.90 -1.97 -25.37 16 3 C -0.37 -17.88 5.90 84.04 0.50 -17.39 16 4 H 0.14 6.22 3.06 -2.91 -0.01 6.21 16 5 C -0.01 -0.27 5.08 84.92 0.43 0.16 16 6 N -0.89 -47.07 11.05 21.66 0.24 -46.83 16 7 Si 0.98 38.27 29.60 68.60 2.03 40.30 16 8 H -0.25 -9.01 7.11 99.48 0.71 -8.31 16 9 H -0.28 -11.25 7.11 99.48 0.71 -10.54 16 10 H -0.28 -10.87 7.11 99.48 0.71 -10.17 16 11 C 0.48 24.14 7.00 87.66 0.61 24.76 16 12 O -0.62 -33.19 11.47 -3.05 -0.03 -33.22 16 13 C -0.12 -4.76 2.47 -52.93 -0.13 -4.89 16 14 C 0.11 3.82 2.97 3.53 0.01 3.83 16 15 N -0.80 -20.61 9.05 -151.56 -1.37 -21.98 16 16 C -0.17 -6.22 9.52 30.62 0.29 -5.93 16 17 C -0.21 -7.25 9.50 30.62 0.29 -6.96 16 18 C -0.15 -5.05 8.84 30.60 0.27 -4.78 16 19 C -0.16 -6.31 8.80 30.59 0.27 -6.04 16 20 H 0.05 2.34 6.92 -2.39 -0.02 2.32 16 21 H 0.07 3.93 6.09 -2.39 -0.01 3.92 16 22 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 23 H 0.27 13.39 8.31 -92.71 -0.77 12.62 16 24 H 0.36 7.47 8.87 -89.69 -0.80 6.68 16 25 H 0.35 7.80 7.55 -89.70 -0.68 7.12 16 26 H 0.11 3.28 8.14 -2.39 -0.02 3.26 16 27 H 0.06 2.90 6.78 -2.39 -0.02 2.89 16 28 H 0.09 3.84 5.79 -2.39 -0.01 3.83 16 29 H 0.10 2.92 8.14 -2.39 -0.02 2.90 16 30 H 0.12 3.21 6.81 -2.39 -0.02 3.19 16 31 H 0.10 3.54 6.26 -2.38 -0.01 3.52 16 32 H 0.13 5.84 4.53 -2.39 -0.01 5.83 16 33 H 0.10 3.57 7.87 -2.39 -0.02 3.55 16 Total: -1.00 -59.91 258.44 2.36 -57.55 By element: Atomic # 1 Polarization: 41.00 SS G_CDS: -0.31 Total: 40.69 kcal Atomic # 6 Polarization: -14.92 SS G_CDS: 3.77 Total: -11.15 kcal Atomic # 7 Polarization: -91.08 SS G_CDS: -3.10 Total: -94.17 kcal Atomic # 8 Polarization: -33.19 SS G_CDS: -0.03 Total: -33.22 kcal Atomic # 14 Polarization: 38.27 SS G_CDS: 2.03 Total: 40.30 kcal Total: -59.91 2.36 -57.55 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259516046.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.380 kcal (2) G-P(sol) polarization free energy of solvation -59.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.552 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds