Wall clock time and date at job start Mon Mar 30 2020 02:34:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50689 * 1 3 3 C 1.34336 * 126.44461 * 2 1 4 4 N 1.34478 * 107.66811 * 180.02562 * 3 2 1 5 5 C 1.30259 * 108.70286 * 359.97438 * 4 3 2 6 6 C 1.50698 * 125.61538 * 180.02562 * 5 4 3 7 7 H 1.09008 * 109.46558 * 177.65695 * 6 5 4 8 8 C 1.52993 * 109.47498 * 297.65576 * 6 5 4 9 9 C 1.50694 * 109.47635 * 182.87606 * 8 6 5 10 10 H 1.08000 * 119.99748 * 355.36719 * 9 8 6 11 11 C 1.37878 * 120.00564 * 175.37019 * 9 8 6 12 12 N 1.31513 * 119.99389 * 0.02562 * 11 9 8 13 13 Si 1.86796 * 120.00241 * 179.97438 * 11 9 8 14 14 H 1.48505 * 109.46927 * 89.99866 * 13 11 9 15 15 H 1.48494 * 109.47348 * 209.99876 * 13 11 9 16 16 H 1.48498 * 109.47180 * 330.00309 * 13 11 9 17 17 N 1.46897 * 109.47328 * 57.66129 * 6 5 4 18 18 C 1.46903 * 110.99960 * 304.15750 * 17 6 5 19 19 C 1.46904 * 111.00233 * 68.11262 * 17 6 5 20 20 O 1.33971 * 108.75964 * 0.02562 * 5 4 3 21 21 H 1.08996 * 109.47424 * 269.95585 * 1 2 3 22 22 H 1.09002 * 109.47351 * 29.96220 * 1 2 3 23 23 H 1.08999 * 109.47347 * 149.95826 * 1 2 3 24 24 H 1.08001 * 126.16354 * 0.05602 * 3 2 1 25 25 H 1.09002 * 109.47554 * 302.87835 * 8 6 5 26 26 H 1.09007 * 109.47139 * 62.87592 * 8 6 5 27 27 H 0.97002 * 119.99504 * 179.97438 * 12 11 9 28 28 H 1.09004 * 109.46623 * 67.33779 * 18 17 6 29 29 H 1.09001 * 109.46629 * 187.33621 * 18 17 6 30 30 H 1.08994 * 109.46908 * 307.33950 * 18 17 6 31 31 H 1.09005 * 109.47031 * 59.80074 * 19 17 6 32 32 H 1.09001 * 109.47311 * 179.80314 * 19 17 6 33 33 H 1.09000 * 109.46782 * 299.80438 * 19 17 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3049 1.0806 0.0000 4 7 3.5781 0.6478 -0.0006 5 6 3.5764 -0.6548 -0.0004 6 6 4.8004 -1.5339 -0.0003 7 1 4.4964 -2.5799 0.0419 8 6 5.6052 -1.2880 -1.2780 9 6 6.7911 -2.2171 -1.3116 10 1 6.9969 -2.8607 -0.4690 11 6 7.6135 -2.2458 -2.4178 12 7 7.3632 -1.4618 -3.4436 13 14 9.0839 -3.3971 -2.4591 14 1 8.6747 -4.7021 -3.0379 15 1 10.1569 -2.8000 -3.2940 16 1 9.5888 -3.6048 -1.0781 17 7 5.6304 -1.2177 1.1697 18 6 5.9777 0.2093 1.1987 19 6 4.9624 -1.6223 2.4140 20 8 2.3074 -1.0840 -0.0002 21 1 -0.3634 -0.0008 1.0276 22 1 -0.3634 0.8903 -0.5132 23 1 -0.3634 -0.8896 -0.5145 24 1 1.9821 2.1113 0.0009 25 1 4.9735 -1.4735 -2.1467 26 1 5.9525 -0.2548 -1.2954 27 1 7.9420 -1.4816 -4.2218 28 1 5.0781 0.7986 1.3769 29 1 6.6961 0.3922 1.9977 30 1 6.4163 0.4959 0.2429 31 1 4.7762 -2.6962 2.3938 32 1 5.6000 -1.3800 3.2642 33 1 4.0152 -1.0910 2.5071 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259518960.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:47 Heat of formation + Delta-G solvation = 6.836679 kcal Electronic energy + Delta-G solvation = -15772.911515 eV Core-core repulsion = 13220.835815 eV Total energy + Delta-G solvation = -2552.075700 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -44.33438 -39.07950 -35.63655 -35.02196 -33.41532 -31.89623 -28.61616 -28.29137 -26.50855 -24.40096 -23.73830 -22.48456 -21.04886 -18.62569 -17.91367 -17.62163 -16.70551 -16.49006 -15.91496 -15.48074 -15.20488 -14.63636 -14.30231 -13.99234 -13.83319 -13.45767 -13.27008 -13.15911 -12.78977 -12.71487 -12.54312 -12.46728 -12.22568 -12.04265 -11.54283 -11.36333 -11.19003 -10.50440 -9.57825 -9.33807 -8.11743 -6.19042 0.45151 1.45901 1.47692 1.59266 1.69954 1.73299 2.49256 3.00827 3.20104 3.29313 3.85044 4.07366 4.13353 4.35393 4.44022 4.50724 4.58917 4.66741 4.69663 4.76531 4.89123 4.94838 5.04947 5.17795 5.18978 5.33015 5.43513 5.56834 5.85101 6.03822 6.19895 6.31877 6.80395 6.94309 7.47563 9.01065 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.035471 B = 0.007727 C = 0.007062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.191540 B = 3622.784729 C = 3963.985534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C -0.060 4.060 3 C -0.070 4.070 4 N -0.496 5.496 5 C 0.154 3.846 6 C 0.190 3.810 7 H 0.097 0.903 8 C 0.052 3.948 9 C -0.506 4.506 10 H 0.071 0.929 11 C -0.004 4.004 12 N -0.940 5.940 13 Si 0.967 3.033 14 H -0.273 1.273 15 H -0.288 1.288 16 H -0.262 1.262 17 N -0.514 5.514 18 C 0.028 3.972 19 C 0.025 3.975 20 O -0.218 6.218 21 H 0.102 0.898 22 H 0.115 0.885 23 H 0.081 0.919 24 H 0.208 0.792 25 H -0.011 1.011 26 H 0.004 0.996 27 H 0.260 0.740 28 H 0.046 0.954 29 H 0.075 0.925 30 H 0.048 0.952 31 H 0.077 0.923 32 H 0.088 0.912 33 H 0.012 0.988 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.957 2.173 10.077 15.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.113 4.113 3 C -0.208 4.208 4 N -0.226 5.226 5 C -0.054 4.054 6 C 0.080 3.920 7 H 0.115 0.885 8 C 0.014 3.986 9 C -0.544 4.544 10 H 0.089 0.911 11 C -0.201 4.201 12 N -0.582 5.582 13 Si 0.792 3.208 14 H -0.199 1.199 15 H -0.213 1.213 16 H -0.186 1.186 17 N -0.237 5.237 18 C -0.120 4.120 19 C -0.123 4.123 20 O -0.105 6.105 21 H 0.120 0.880 22 H 0.133 0.867 23 H 0.100 0.900 24 H 0.225 0.775 25 H 0.008 0.992 26 H 0.022 0.978 27 H 0.069 0.931 28 H 0.064 0.936 29 H 0.094 0.906 30 H 0.067 0.933 31 H 0.096 0.904 32 H 0.107 0.893 33 H 0.030 0.970 Dipole moment (debyes) X Y Z Total from point charges -10.918 2.259 9.902 14.912 hybrid contribution -0.516 -0.134 -0.518 0.743 sum -11.434 2.125 9.384 14.944 Atomic orbital electron populations 1.20476 0.80405 1.05642 1.05146 1.24444 0.96933 0.84056 1.05825 1.23690 0.87389 1.01875 1.07826 1.70509 1.24162 1.09581 1.18324 1.28146 0.84835 0.91527 1.00904 1.20568 0.82027 0.95221 0.94226 0.88497 1.18929 0.93902 0.96783 0.88949 1.21398 1.09875 1.21485 1.01642 0.91055 1.25941 1.01175 0.97700 0.95256 1.70130 1.40213 1.40817 1.07002 0.85409 0.78440 0.78568 0.78372 1.19900 1.21344 1.18617 1.62366 1.39978 1.19670 1.01639 1.22490 1.00510 0.86976 1.02005 1.22503 0.96615 1.01336 0.91873 1.84431 1.18181 1.38006 1.69884 0.88005 0.86699 0.89978 0.77483 0.99225 0.97773 0.93085 0.93582 0.90594 0.93274 0.90431 0.89294 0.96977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.98 10.43 71.23 0.74 -0.24 16 2 C -0.06 -1.74 7.39 24.79 0.18 -1.55 16 3 C -0.07 -2.21 11.80 83.40 0.98 -1.23 16 4 N -0.50 -20.10 8.46 -303.82 -2.57 -22.67 16 5 C 0.15 6.40 5.72 88.34 0.51 6.91 16 6 C 0.19 8.46 2.25 44.17 0.10 8.56 16 7 H 0.10 4.16 8.09 -2.38 -0.02 4.15 16 8 C 0.05 2.85 4.29 29.84 0.13 2.98 16 9 C -0.51 -28.88 8.80 25.60 0.23 -28.65 16 10 H 0.07 3.93 7.69 -2.91 -0.02 3.91 16 11 C 0.00 -0.25 5.46 84.66 0.46 0.22 16 12 N -0.94 -58.47 13.29 21.45 0.28 -58.19 16 13 Si 0.97 45.20 29.54 68.60 2.03 47.23 16 14 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 15 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 16 H -0.26 -11.71 7.11 99.48 0.71 -11.01 16 17 N -0.51 -20.65 4.60 -927.72 -4.26 -24.91 16 18 C 0.03 1.10 8.56 127.69 1.09 2.20 16 19 C 0.02 0.76 9.38 127.69 1.20 1.96 16 20 O -0.22 -8.14 10.78 -3.77 -0.04 -8.18 16 21 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 22 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 23 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 24 H 0.21 4.84 8.06 -2.91 -0.02 4.82 16 25 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 26 H 0.00 0.24 6.22 -2.38 -0.01 0.23 16 27 H 0.26 15.28 8.31 -92.71 -0.77 14.51 16 28 H 0.05 1.79 5.74 -2.38 -0.01 1.78 16 29 H 0.08 2.57 8.14 -2.39 -0.02 2.55 16 30 H 0.05 2.27 6.04 -2.39 -0.01 2.26 16 31 H 0.08 2.22 8.13 -2.38 -0.02 2.20 16 32 H 0.09 2.34 8.14 -2.39 -0.02 2.33 16 33 H 0.01 0.37 7.36 -2.39 -0.02 0.36 16 Total: -1.00 -70.72 276.55 2.15 -68.58 By element: Atomic # 1 Polarization: 5.90 SS G_CDS: 1.09 Total: 6.98 kcal Atomic # 6 Polarization: -14.47 SS G_CDS: 5.62 Total: -8.85 kcal Atomic # 7 Polarization: -99.22 SS G_CDS: -6.55 Total: -105.77 kcal Atomic # 8 Polarization: -8.14 SS G_CDS: -0.04 Total: -8.18 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 2.03 Total: 47.23 kcal Total: -70.72 2.15 -68.58 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259518960.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.415 kcal (2) G-P(sol) polarization free energy of solvation -70.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.579 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds