Wall clock time and date at job start Mon Mar 30 2020 02:34:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.34325 * 126.44335 * 2 1 4 4 N 1.34486 * 107.66637 * 180.02562 * 3 2 1 5 5 C 1.30254 * 108.70288 * 359.97438 * 4 3 2 6 6 C 1.50695 * 125.61954 * 179.97438 * 5 4 3 7 7 H 1.08998 * 109.47263 * 195.02786 * 6 5 4 8 8 C 1.52997 * 109.46942 * 75.02725 * 6 5 4 9 9 C 1.50706 * 109.47238 * 174.99721 * 8 6 5 10 10 H 1.07999 * 119.99515 * 0.02562 * 9 8 6 11 11 C 1.37870 * 120.00176 * 180.02562 * 9 8 6 12 12 N 1.31520 * 119.99883 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 120.00043 * 180.02562 * 11 9 8 14 14 H 1.48499 * 109.47293 * 89.99746 * 13 11 9 15 15 H 1.48504 * 109.47104 * 209.99992 * 13 11 9 16 16 H 1.48495 * 109.47249 * 329.99739 * 13 11 9 17 17 N 1.46896 * 109.47186 * 315.03045 * 6 5 4 18 18 C 1.46907 * 111.00008 * 294.99750 * 17 6 5 19 19 C 1.46896 * 111.00294 * 58.95309 * 17 6 5 20 20 O 1.33971 * 108.75693 * 0.23058 * 5 4 3 21 21 H 1.09000 * 109.46709 * 89.97891 * 1 2 3 22 22 H 1.08992 * 109.47489 * 209.97476 * 1 2 3 23 23 H 1.09001 * 109.47025 * 329.98342 * 1 2 3 24 24 H 1.07997 * 126.17180 * 0.04891 * 3 2 1 25 25 H 1.09001 * 109.46832 * 55.00035 * 8 6 5 26 26 H 1.09000 * 109.47611 * 295.00332 * 8 6 5 27 27 H 0.97004 * 119.99507 * 180.02562 * 12 11 9 28 28 H 1.08999 * 109.47017 * 63.95619 * 18 17 6 29 29 H 1.08999 * 109.47256 * 183.96084 * 18 17 6 30 30 H 1.09002 * 109.47226 * 303.95639 * 18 17 6 31 31 H 1.08995 * 109.47393 * 56.04784 * 19 17 6 32 32 H 1.09005 * 109.47061 * 176.04903 * 19 17 6 33 33 H 1.08998 * 109.47017 * 296.04568 * 19 17 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3050 1.0806 0.0000 4 7 3.5782 0.6477 -0.0006 5 6 3.5765 -0.6549 -0.0004 6 6 4.8004 -1.5341 -0.0014 7 1 4.5162 -2.5522 -0.2674 8 6 5.4333 -1.5287 1.3915 9 6 6.5836 -2.5019 1.4244 10 1 6.8380 -3.0672 0.5401 11 6 7.3111 -2.6704 2.5833 12 7 7.0010 -1.9822 3.6604 13 14 8.7374 -3.8760 2.6239 14 1 9.9882 -3.1765 2.2348 15 1 8.8832 -4.4244 3.9962 16 1 8.4746 -4.9858 1.6728 17 7 5.7688 -1.0242 -0.9812 18 6 5.2384 -1.1252 -2.3474 19 6 6.1568 0.3576 -0.6680 20 8 2.3074 -1.0840 -0.0048 21 1 -0.3633 0.0004 -1.0277 22 1 -0.3634 -0.8901 0.5134 23 1 -0.3633 0.8898 0.5141 24 1 1.9823 2.1112 0.0007 25 1 4.6878 -1.8224 2.1305 26 1 5.7977 -0.5275 1.6213 27 1 7.5131 -2.1005 4.4757 28 1 4.3614 -0.4853 -2.4449 29 1 6.0013 -0.8069 -3.0579 30 1 4.9589 -2.1585 -2.5532 31 1 6.5461 0.4040 0.3490 32 1 6.9260 0.6863 -1.3669 33 1 5.2862 1.0077 -0.7538 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259518963.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:49 Heat of formation + Delta-G solvation = 32.266090 kcal Electronic energy + Delta-G solvation = -15779.240327 eV Core-core repulsion = 13228.267329 eV Total energy + Delta-G solvation = -2550.972998 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -42.93890 -37.48781 -34.19866 -32.92399 -32.20814 -30.12330 -27.08321 -26.74427 -24.96215 -22.58879 -22.17912 -21.13084 -19.45162 -16.80701 -16.40218 -15.91380 -15.11960 -14.55822 -14.49422 -13.95865 -13.74406 -13.33811 -13.06357 -12.77679 -12.24730 -12.08864 -11.83782 -11.56625 -11.09817 -10.92688 -10.89954 -10.77614 -10.53235 -10.16771 -9.79684 -9.62069 -9.08477 -8.31102 -8.21857 -7.71536 -5.93221 -3.93036 1.81898 3.06092 3.08555 3.39618 3.45228 3.49412 4.43098 4.56614 4.73395 4.97426 5.19461 5.36490 5.41702 5.44084 5.63199 5.67313 5.83473 5.93503 6.14050 6.19421 6.25991 6.34085 6.46130 6.61845 6.72707 7.06175 7.38491 7.58793 7.77515 7.82201 8.05952 8.20520 8.43789 9.11982 9.68859 11.18633 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.034638 B = 0.007803 C = 0.007080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.161775 B = 3587.412885 C = 3953.919837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C -0.074 4.074 3 C -0.047 4.047 4 N -0.483 5.483 5 C 0.189 3.811 6 C 0.179 3.821 7 H 0.097 0.903 8 C 0.037 3.963 9 C -0.497 4.497 10 H 0.065 0.935 11 C 0.053 3.947 12 N -0.900 5.900 13 Si 0.896 3.104 14 H -0.281 1.281 15 H -0.289 1.289 16 H -0.274 1.274 17 N -0.496 5.496 18 C 0.020 3.980 19 C 0.002 3.998 20 O -0.205 6.205 21 H 0.077 0.923 22 H 0.075 0.925 23 H 0.086 0.914 24 H 0.175 0.825 25 H 0.022 0.978 26 H 0.034 0.966 27 H 0.259 0.741 28 H 0.015 0.985 29 H 0.065 0.935 30 H 0.063 0.937 31 H 0.082 0.918 32 H 0.049 0.951 33 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.085 4.044 -8.749 13.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.128 4.128 3 C -0.185 4.185 4 N -0.212 5.212 5 C -0.019 4.019 6 C 0.067 3.933 7 H 0.115 0.885 8 C -0.001 4.001 9 C -0.535 4.535 10 H 0.084 0.916 11 C -0.147 4.147 12 N -0.540 5.540 13 Si 0.724 3.276 14 H -0.207 1.207 15 H -0.216 1.216 16 H -0.199 1.199 17 N -0.218 5.218 18 C -0.129 4.129 19 C -0.146 4.146 20 O -0.091 6.091 21 H 0.095 0.905 22 H 0.094 0.906 23 H 0.105 0.895 24 H 0.192 0.808 25 H 0.040 0.960 26 H 0.053 0.947 27 H 0.069 0.931 28 H 0.034 0.966 29 H 0.084 0.916 30 H 0.082 0.918 31 H 0.100 0.900 32 H 0.068 0.932 33 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -9.069 4.096 -8.554 13.122 hybrid contribution -0.619 -0.335 0.079 0.708 sum -9.687 3.761 -8.475 13.410 Atomic orbital electron populations 1.20151 0.84707 1.03931 1.03066 1.23312 0.94861 0.85281 1.09335 1.23104 0.88639 0.99895 1.06874 1.70511 1.21569 1.09474 1.19650 1.28841 0.84596 0.91389 0.97106 1.21144 0.80021 0.93663 0.98422 0.88549 1.19275 0.95676 0.99148 0.85978 1.21045 1.13294 1.22225 0.96946 0.91635 1.24995 0.97684 0.96346 0.95655 1.69982 1.40630 1.41640 1.01725 0.86525 0.82777 0.81331 0.76925 1.20749 1.21553 1.19866 1.62392 1.36076 1.22820 1.00536 1.22451 0.98119 1.00911 0.91430 1.22892 1.00942 0.88008 1.02745 1.84452 1.18317 1.36595 1.69765 0.90481 0.90643 0.89512 0.80753 0.95983 0.94740 0.93111 0.96610 0.91590 0.91827 0.89962 0.93214 0.91429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.62 10.43 36.01 0.38 -0.24 16 2 C -0.07 -1.16 7.39 -35.69 -0.26 -1.42 16 3 C -0.05 -0.77 11.80 -17.77 -0.21 -0.98 16 4 N -0.48 -9.54 8.00 -11.10 -0.09 -9.63 16 5 C 0.19 3.86 5.88 -12.95 -0.08 3.79 16 6 C 0.18 3.87 2.25 -68.87 -0.15 3.71 16 7 H 0.10 2.03 8.10 -51.93 -0.42 1.61 16 8 C 0.04 0.96 4.25 -27.88 -0.12 0.84 16 9 C -0.50 -13.84 8.84 -34.44 -0.30 -14.14 16 10 H 0.07 1.80 7.74 -52.49 -0.41 1.39 16 11 C 0.05 1.53 5.46 -17.82 -0.10 1.43 16 12 N -0.90 -27.07 13.29 55.43 0.74 -26.33 16 13 Si 0.90 21.87 29.54 -169.99 -5.02 16.85 16 14 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 15 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 16 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 17 N -0.50 -10.05 4.72 -244.59 -1.15 -11.21 16 18 C 0.02 0.32 9.30 60.07 0.56 0.88 16 19 C 0.00 0.03 8.77 60.06 0.53 0.56 16 20 O -0.20 -3.89 10.78 5.36 0.06 -3.83 16 21 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 22 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 23 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 24 H 0.18 2.21 8.06 -52.49 -0.42 1.79 16 25 H 0.02 0.62 8.14 -51.93 -0.42 0.19 16 26 H 0.03 0.96 6.10 -51.93 -0.32 0.65 16 27 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 28 H 0.02 0.26 7.38 -51.93 -0.38 -0.12 16 29 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.06 0.98 8.11 -51.93 -0.42 0.56 16 31 H 0.08 1.85 6.03 -51.93 -0.31 1.54 16 32 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.07 1.33 5.11 -51.93 -0.27 1.07 16 LS Contribution 275.79 15.07 4.16 4.16 Total: -1.00 -31.53 275.79 -5.70 -37.23 By element: Atomic # 1 Polarization: 2.96 SS G_CDS: -4.62 Total: -1.67 kcal Atomic # 6 Polarization: -5.80 SS G_CDS: 0.24 Total: -5.57 kcal Atomic # 7 Polarization: -46.66 SS G_CDS: -0.51 Total: -47.17 kcal Atomic # 8 Polarization: -3.89 SS G_CDS: 0.06 Total: -3.83 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -31.53 -5.70 -37.23 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259518963.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.493 kcal (2) G-P(sol) polarization free energy of solvation -31.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.227 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds