Wall clock time and date at job start Mon Mar 30 2020 02:34:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.34325 * 126.44335 * 2 1 4 4 N 1.34486 * 107.66637 * 180.02562 * 3 2 1 5 5 C 1.30254 * 108.70288 * 359.97438 * 4 3 2 6 6 C 1.50695 * 125.61954 * 179.97438 * 5 4 3 7 7 H 1.08998 * 109.47263 * 195.02786 * 6 5 4 8 8 C 1.52997 * 109.46942 * 75.02725 * 6 5 4 9 9 C 1.50706 * 109.47238 * 174.99721 * 8 6 5 10 10 H 1.07999 * 119.99515 * 0.02562 * 9 8 6 11 11 C 1.37870 * 120.00176 * 180.02562 * 9 8 6 12 12 N 1.31520 * 119.99883 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 120.00043 * 180.02562 * 11 9 8 14 14 H 1.48499 * 109.47293 * 89.99746 * 13 11 9 15 15 H 1.48504 * 109.47104 * 209.99992 * 13 11 9 16 16 H 1.48495 * 109.47249 * 329.99739 * 13 11 9 17 17 N 1.46896 * 109.47186 * 315.03045 * 6 5 4 18 18 C 1.46907 * 111.00008 * 294.99750 * 17 6 5 19 19 C 1.46896 * 111.00294 * 58.95309 * 17 6 5 20 20 O 1.33971 * 108.75693 * 0.23058 * 5 4 3 21 21 H 1.09000 * 109.46709 * 89.97891 * 1 2 3 22 22 H 1.08992 * 109.47489 * 209.97476 * 1 2 3 23 23 H 1.09001 * 109.47025 * 329.98342 * 1 2 3 24 24 H 1.07997 * 126.17180 * 0.04891 * 3 2 1 25 25 H 1.09001 * 109.46832 * 55.00035 * 8 6 5 26 26 H 1.09000 * 109.47611 * 295.00332 * 8 6 5 27 27 H 0.97004 * 119.99507 * 180.02562 * 12 11 9 28 28 H 1.08999 * 109.47017 * 63.95619 * 18 17 6 29 29 H 1.08999 * 109.47256 * 183.96084 * 18 17 6 30 30 H 1.09002 * 109.47226 * 303.95639 * 18 17 6 31 31 H 1.08995 * 109.47393 * 56.04784 * 19 17 6 32 32 H 1.09005 * 109.47061 * 176.04903 * 19 17 6 33 33 H 1.08998 * 109.47017 * 296.04568 * 19 17 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3050 1.0806 0.0000 4 7 3.5782 0.6477 -0.0006 5 6 3.5765 -0.6549 -0.0004 6 6 4.8004 -1.5341 -0.0014 7 1 4.5162 -2.5522 -0.2674 8 6 5.4333 -1.5287 1.3915 9 6 6.5836 -2.5019 1.4244 10 1 6.8380 -3.0672 0.5401 11 6 7.3111 -2.6704 2.5833 12 7 7.0010 -1.9822 3.6604 13 14 8.7374 -3.8760 2.6239 14 1 9.9882 -3.1765 2.2348 15 1 8.8832 -4.4244 3.9962 16 1 8.4746 -4.9858 1.6728 17 7 5.7688 -1.0242 -0.9812 18 6 5.2384 -1.1252 -2.3474 19 6 6.1568 0.3576 -0.6680 20 8 2.3074 -1.0840 -0.0048 21 1 -0.3633 0.0004 -1.0277 22 1 -0.3634 -0.8901 0.5134 23 1 -0.3633 0.8898 0.5141 24 1 1.9823 2.1112 0.0007 25 1 4.6878 -1.8224 2.1305 26 1 5.7977 -0.5275 1.6213 27 1 7.5131 -2.1005 4.4757 28 1 4.3614 -0.4853 -2.4449 29 1 6.0013 -0.8069 -3.0579 30 1 4.9589 -2.1585 -2.5532 31 1 6.5461 0.4040 0.3490 32 1 6.9260 0.6863 -1.3669 33 1 5.2862 1.0077 -0.7538 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259518963.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:49 Heat of formation + Delta-G solvation = 9.194379 kcal Electronic energy + Delta-G solvation = -15780.240792 eV Core-core repulsion = 13228.267329 eV Total energy + Delta-G solvation = -2551.973462 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -44.33511 -39.09604 -35.63388 -35.00946 -33.39223 -31.90484 -28.63688 -28.25380 -26.53523 -24.39955 -23.69146 -22.49355 -21.08153 -18.64286 -17.88209 -17.63107 -16.72019 -16.50705 -15.88641 -15.47531 -15.12787 -14.67428 -14.29809 -14.03091 -13.84225 -13.43795 -13.29680 -13.10084 -12.82425 -12.71301 -12.54063 -12.46985 -12.27487 -12.05742 -11.54405 -11.28633 -11.18307 -10.51210 -9.55637 -9.26262 -8.12790 -6.20230 0.46225 1.45535 1.47543 1.58146 1.69451 1.73879 2.48338 2.98311 3.20673 3.31262 3.86346 4.08306 4.13877 4.36191 4.43293 4.52748 4.60685 4.67102 4.70175 4.78055 4.91575 4.95706 5.07520 5.19314 5.20436 5.32113 5.52368 5.56954 5.83587 6.05678 6.21798 6.30101 6.79165 6.92144 7.46340 8.99918 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.034638 B = 0.007803 C = 0.007080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.161775 B = 3587.412885 C = 3953.919837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C -0.062 4.062 3 C -0.068 4.068 4 N -0.497 5.497 5 C 0.158 3.842 6 C 0.189 3.811 7 H 0.098 0.902 8 C 0.049 3.951 9 C -0.506 4.506 10 H 0.069 0.931 11 C -0.003 4.003 12 N -0.939 5.939 13 Si 0.967 3.033 14 H -0.276 1.276 15 H -0.286 1.286 16 H -0.261 1.261 17 N -0.512 5.512 18 C 0.025 3.975 19 C 0.012 3.988 20 O -0.219 6.219 21 H 0.102 0.898 22 H 0.080 0.920 23 H 0.115 0.885 24 H 0.210 0.790 25 H -0.011 1.011 26 H 0.006 0.994 27 H 0.261 0.739 28 H 0.013 0.987 29 H 0.087 0.913 30 H 0.074 0.926 31 H 0.045 0.955 32 H 0.072 0.928 33 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.930 3.940 -10.256 15.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.114 4.114 3 C -0.206 4.206 4 N -0.226 5.226 5 C -0.050 4.050 6 C 0.078 3.922 7 H 0.116 0.884 8 C 0.011 3.989 9 C -0.544 4.544 10 H 0.088 0.912 11 C -0.200 4.200 12 N -0.581 5.581 13 Si 0.792 3.208 14 H -0.202 1.202 15 H -0.212 1.212 16 H -0.185 1.185 17 N -0.234 5.234 18 C -0.123 4.123 19 C -0.136 4.136 20 O -0.106 6.106 21 H 0.120 0.880 22 H 0.099 0.901 23 H 0.133 0.867 24 H 0.226 0.774 25 H 0.007 0.993 26 H 0.024 0.976 27 H 0.069 0.931 28 H 0.032 0.968 29 H 0.106 0.894 30 H 0.093 0.907 31 H 0.063 0.937 32 H 0.090 0.910 33 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -9.929 3.983 -10.083 14.701 hybrid contribution -0.497 -0.217 0.539 0.765 sum -10.427 3.765 -9.544 14.628 Atomic orbital electron populations 1.20476 0.80487 1.05596 1.05139 1.24431 0.96933 0.84072 1.06014 1.23713 0.87439 1.01848 1.07594 1.70425 1.23790 1.09295 1.19123 1.28275 0.84888 0.91499 1.00326 1.20592 0.80928 0.94415 0.96235 0.88442 1.18980 0.94630 0.96979 0.88289 1.21367 1.13699 1.22279 0.97066 0.91247 1.25924 1.00587 0.98231 0.95237 1.70126 1.42100 1.43424 1.02424 0.85410 0.79086 0.79110 0.77177 1.20161 1.21218 1.18504 1.62354 1.36321 1.22779 1.01974 1.22482 0.98621 1.01738 0.89444 1.22747 1.01470 0.88289 1.01107 1.84434 1.18208 1.38096 1.69848 0.87993 0.90108 0.86669 0.77367 0.99320 0.97581 0.93050 0.96802 0.89390 0.90704 0.93651 0.90962 0.91265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.00 10.43 71.24 0.74 -0.25 16 2 C -0.06 -1.80 7.39 24.79 0.18 -1.62 16 3 C -0.07 -2.12 11.80 83.39 0.98 -1.14 16 4 N -0.50 -19.61 8.00 -303.83 -2.43 -22.04 16 5 C 0.16 6.55 5.88 88.34 0.52 7.07 16 6 C 0.19 8.41 2.25 44.17 0.10 8.51 16 7 H 0.10 4.19 8.10 -2.39 -0.02 4.17 16 8 C 0.05 2.67 4.25 29.85 0.13 2.80 16 9 C -0.51 -28.88 8.84 25.60 0.23 -28.65 16 10 H 0.07 3.83 7.74 -2.91 -0.02 3.80 16 11 C 0.00 -0.19 5.46 84.65 0.46 0.28 16 12 N -0.94 -58.22 13.29 21.45 0.28 -57.94 16 13 Si 0.97 45.20 29.54 68.60 2.03 47.22 16 14 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 15 H -0.29 -13.15 7.11 99.48 0.71 -12.44 16 16 H -0.26 -11.56 7.11 99.48 0.71 -10.86 16 17 N -0.51 -20.72 4.72 -927.75 -4.38 -25.10 16 18 C 0.03 0.79 9.30 127.69 1.19 1.98 16 19 C 0.01 0.47 8.77 127.69 1.12 1.59 16 20 O -0.22 -8.26 10.78 -3.74 -0.04 -8.30 16 21 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 22 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 23 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 24 H 0.21 4.71 8.06 -2.91 -0.02 4.69 16 25 H -0.01 -0.69 8.14 -2.39 -0.02 -0.70 16 26 H 0.01 0.36 6.10 -2.39 -0.01 0.34 16 27 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 28 H 0.01 0.44 7.38 -2.39 -0.02 0.42 16 29 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 30 H 0.07 2.17 8.11 -2.39 -0.02 2.15 16 31 H 0.04 2.13 6.03 -2.39 -0.01 2.11 16 32 H 0.07 2.50 8.14 -2.38 -0.02 2.48 16 33 H 0.07 2.75 5.11 -2.39 -0.01 2.74 16 Total: -1.00 -70.13 275.79 2.20 -67.93 By element: Atomic # 1 Polarization: 6.56 SS G_CDS: 1.09 Total: 7.65 kcal Atomic # 6 Polarization: -15.09 SS G_CDS: 5.65 Total: -9.44 kcal Atomic # 7 Polarization: -98.55 SS G_CDS: -6.53 Total: -105.08 kcal Atomic # 8 Polarization: -8.26 SS G_CDS: -0.04 Total: -8.30 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 2.03 Total: 47.22 kcal Total: -70.13 2.20 -67.93 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259518963.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.124 kcal (2) G-P(sol) polarization free energy of solvation -70.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.929 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds