Wall clock time and date at job start Mon Mar 30 2020 03:21:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46698 * 110.99883 * 2 1 4 4 C 1.53247 * 109.68382 * 169.96018 * 3 2 1 5 5 N 1.47158 * 108.02452 * 50.02255 * 4 3 2 6 6 C 1.34604 * 125.31605 * 136.37776 * 5 4 3 7 7 O 1.21273 * 124.89275 * 4.50126 * 6 5 4 8 8 C 1.51317 * 110.20934 * 184.47304 * 6 5 4 9 9 C 1.55633 * 104.47909 * 14.71572 * 8 6 5 10 10 H 1.09003 * 110.89227 * 93.59329 * 9 8 6 11 11 C 1.50709 * 111.51962 * 217.75693 * 9 8 6 12 12 H 1.07999 * 119.99768 * 111.90364 * 11 9 8 13 13 C 1.37871 * 119.99900 * 291.89980 * 11 9 8 14 14 N 1.31513 * 119.99975 * 179.97438 * 13 11 9 15 15 Si 1.86796 * 120.00338 * 0.02562 * 13 11 9 16 16 H 1.48510 * 109.47228 * 89.99607 * 15 13 11 17 17 H 1.48502 * 109.47484 * 209.99881 * 15 13 11 18 18 H 1.48501 * 109.47341 * 330.00137 * 15 13 11 19 19 C 1.46757 * 123.86238 * 318.78967 * 5 4 3 20 20 H 1.08999 * 109.92480 * 278.02387 * 19 5 4 21 21 C 1.46578 * 111.00245 * 234.43208 * 2 1 3 22 22 H 1.09001 * 109.46544 * 185.56945 * 1 2 3 23 23 H 1.09001 * 109.47272 * 305.56552 * 1 2 3 24 24 H 1.09000 * 109.47033 * 65.57001 * 1 2 3 25 25 H 1.08997 * 109.43673 * 290.02932 * 3 2 1 26 26 H 1.09007 * 109.43173 * 49.89656 * 3 2 1 27 27 H 1.08996 * 109.75044 * 290.38994 * 4 3 2 28 28 H 1.08997 * 109.74442 * 169.65268 * 4 3 2 29 29 H 1.09003 * 110.47623 * 133.82421 * 8 6 5 30 30 H 1.08995 * 110.48314 * 256.32009 * 8 6 5 31 31 H 0.96998 * 120.00563 * 179.97438 * 14 13 11 32 32 H 1.09005 * 109.34814 * 307.43313 * 21 2 1 33 33 H 1.09001 * 109.34720 * 67.12103 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9947 1.3696 0.0000 4 6 3.5062 1.3423 0.2515 5 7 4.1048 0.3700 -0.6768 6 6 5.2361 0.5610 -1.3807 7 8 5.9569 1.5317 -1.2856 8 6 5.4793 -0.6103 -2.3073 9 6 4.1221 -1.3715 -2.3366 10 1 3.5090 -1.0409 -3.1751 11 6 4.3263 -2.8642 -2.3745 12 1 4.0478 -3.4690 -1.5242 13 6 4.8684 -3.4576 -3.4947 14 7 5.0470 -4.7602 -3.5275 15 14 5.3507 -2.4115 -4.9651 16 1 6.7620 -1.9728 -4.8191 17 1 5.2066 -3.2096 -6.2091 18 1 4.4670 -1.2202 -5.0363 19 6 3.5070 -0.9319 -0.9951 20 1 3.7553 -1.6546 -0.2179 21 6 1.9944 -0.7960 -1.1131 22 1 -0.3632 -1.0229 0.0997 23 1 -0.3634 0.5977 0.8360 24 1 -0.3633 0.4250 -0.9357 25 1 1.7961 1.8343 -0.9657 26 1 1.5065 1.9454 0.7863 27 1 3.7030 1.0392 1.2798 28 1 3.9274 2.3313 0.0713 29 1 5.7460 -0.2590 -3.3041 30 1 6.2623 -1.2555 -1.9091 31 1 5.4281 -5.1778 -4.3157 32 1 1.5402 -1.7867 -1.0946 33 1 1.7505 -0.3046 -2.0551 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259622751.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:34 Heat of formation + Delta-G solvation = -22.724498 kcal Electronic energy + Delta-G solvation = -16128.289237 eV Core-core repulsion = 13574.931668 eV Total energy + Delta-G solvation = -2553.357569 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.19953 -37.51170 -35.49736 -33.39858 -31.96063 -29.34351 -28.76327 -26.02424 -23.90346 -23.49533 -20.87564 -20.24312 -18.71943 -16.89035 -16.27240 -15.56525 -15.02058 -14.78623 -14.65637 -14.44651 -13.95725 -13.35130 -13.04198 -12.75045 -12.71239 -12.06106 -11.95005 -11.70574 -11.12552 -11.07023 -10.98569 -10.74733 -10.66010 -10.09214 -9.82764 -9.48804 -9.02075 -8.67345 -8.44354 -8.00222 -6.21843 -4.24542 3.17161 3.22179 3.30458 3.31995 3.47586 4.03095 4.29762 4.92303 5.04210 5.08772 5.17910 5.31612 5.40436 5.53009 5.57724 5.67694 5.77478 5.83616 5.87064 6.00618 6.03725 6.18388 6.28368 6.48492 6.72998 7.04844 7.07493 7.16719 7.19448 7.49529 7.71034 8.33102 8.76012 8.80999 9.38602 10.90071 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.029266 B = 0.010520 C = 0.008490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.513363 B = 2661.054535 C = 3297.339444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.550 5.550 3 C 0.045 3.955 4 C 0.132 3.868 5 N -0.618 5.618 6 C 0.519 3.481 7 O -0.560 6.560 8 C -0.165 4.165 9 C 0.017 3.983 10 H 0.048 0.952 11 C -0.514 4.514 12 H 0.082 0.918 13 C 0.080 3.920 14 N -0.891 5.891 15 Si 0.870 3.130 16 H -0.272 1.272 17 H -0.288 1.288 18 H -0.264 1.264 19 C 0.149 3.851 20 H 0.085 0.915 21 C 0.058 3.942 22 H 0.070 0.930 23 H 0.064 0.936 24 H 0.023 0.977 25 H 0.035 0.965 26 H 0.082 0.918 27 H 0.070 0.930 28 H 0.083 0.917 29 H 0.079 0.921 30 H 0.107 0.893 31 H 0.267 0.733 32 H 0.093 0.907 33 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.680 8.864 4.814 12.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 N -0.275 5.275 3 C -0.083 4.083 4 C 0.009 3.991 5 N -0.352 5.352 6 C 0.309 3.691 7 O -0.440 6.440 8 C -0.206 4.206 9 C -0.002 4.002 10 H 0.066 0.934 11 C -0.551 4.551 12 H 0.100 0.900 13 C -0.124 4.124 14 N -0.528 5.528 15 Si 0.697 3.303 16 H -0.198 1.198 17 H -0.214 1.214 18 H -0.189 1.189 19 C 0.046 3.954 20 H 0.103 0.897 21 C -0.070 4.070 22 H 0.089 0.911 23 H 0.083 0.917 24 H 0.041 0.959 25 H 0.053 0.947 26 H 0.101 0.899 27 H 0.088 0.912 28 H 0.102 0.898 29 H 0.097 0.903 30 H 0.125 0.875 31 H 0.077 0.923 32 H 0.111 0.889 33 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -7.119 9.034 5.248 12.643 hybrid contribution -0.015 0.802 -1.586 1.777 sum -7.135 9.836 3.662 12.691 Atomic orbital electron populations 1.22321 0.87105 1.02434 0.99988 1.61342 1.07540 1.12751 1.45838 1.22367 0.95434 0.89874 1.00659 1.21509 0.91441 0.92769 0.93332 1.48619 1.25004 1.18555 1.43065 1.21414 0.79862 0.87430 0.80406 1.90606 1.50304 1.33940 1.69108 1.23121 1.03389 0.95566 0.98487 1.20338 0.90745 0.97137 0.92029 0.93417 1.20779 1.42854 0.88330 1.03159 0.89980 1.24922 0.94666 0.94698 0.98112 1.69872 1.43829 1.09329 1.29756 0.87011 0.79904 0.80738 0.82598 1.19769 1.21428 1.18879 1.21674 0.91021 0.82930 0.99809 0.89669 1.22245 0.95482 0.98567 0.90754 0.91083 0.91676 0.95884 0.94680 0.89923 0.91224 0.89847 0.90288 0.87477 0.92323 0.88868 0.94713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 9.58 60.07 0.58 0.91 16 2 N -0.55 -7.79 4.81 -243.63 -1.17 -8.96 16 3 C 0.05 0.59 5.63 -3.81 -0.02 0.57 16 4 C 0.13 1.98 6.99 -3.56 -0.02 1.96 16 5 N -0.62 -11.51 3.16 -164.84 -0.52 -12.03 16 6 C 0.52 10.99 8.05 -10.76 -0.09 10.90 16 7 O -0.56 -13.08 17.56 5.56 0.10 -12.98 16 8 C -0.17 -3.56 5.12 -26.18 -0.13 -3.69 16 9 C 0.02 0.38 2.02 -89.85 -0.18 0.20 16 10 H 0.05 1.05 6.55 -51.93 -0.34 0.71 16 11 C -0.51 -13.05 8.99 -34.44 -0.31 -13.36 16 12 H 0.08 2.24 7.85 -52.49 -0.41 1.83 16 13 C 0.08 2.13 5.47 -17.82 -0.10 2.03 16 14 N -0.89 -25.54 13.96 55.43 0.77 -24.77 16 15 Si 0.87 20.35 25.20 -169.99 -4.28 16.07 16 16 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 17 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 18 H -0.26 -5.92 6.44 56.52 0.36 -5.55 16 19 C 0.15 2.82 3.25 -67.62 -0.22 2.60 16 20 H 0.09 1.70 7.74 -51.93 -0.40 1.30 16 21 C 0.06 0.94 5.02 -4.34 -0.02 0.92 16 22 H 0.07 0.76 8.13 -51.93 -0.42 0.34 16 23 H 0.06 0.61 8.02 -51.93 -0.42 0.20 16 24 H 0.02 0.25 8.14 -51.93 -0.42 -0.17 16 25 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.08 0.86 7.99 -51.93 -0.41 0.45 16 27 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.08 1.23 7.81 -51.93 -0.41 0.82 16 29 H 0.08 1.69 6.44 -51.93 -0.33 1.35 16 30 H 0.11 2.35 7.90 -51.93 -0.41 1.94 16 31 H 0.27 7.21 8.31 -40.82 -0.34 6.88 16 32 H 0.09 1.51 8.10 -51.93 -0.42 1.09 16 33 H 0.03 0.58 7.77 -51.93 -0.40 0.18 16 LS Contribution 262.50 15.07 3.96 3.96 Total: -1.00 -29.48 262.50 -6.49 -35.98 By element: Atomic # 1 Polarization: 4.53 SS G_CDS: -4.82 Total: -0.29 kcal Atomic # 6 Polarization: 3.56 SS G_CDS: -0.52 Total: 3.04 kcal Atomic # 7 Polarization: -44.84 SS G_CDS: -0.92 Total: -45.76 kcal Atomic # 8 Polarization: -13.08 SS G_CDS: 0.10 Total: -12.98 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -4.28 Total: 16.07 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -29.48 -6.49 -35.98 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259622751.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.254 kcal (2) G-P(sol) polarization free energy of solvation -29.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds