Wall clock time and date at job start Mon Mar 30 2020 03:21:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46698 * 110.99883 * 2 1 4 4 C 1.53247 * 109.68382 * 169.96018 * 3 2 1 5 5 N 1.47158 * 108.02452 * 50.02255 * 4 3 2 6 6 C 1.34604 * 125.31605 * 136.37776 * 5 4 3 7 7 O 1.21273 * 124.89275 * 4.50126 * 6 5 4 8 8 C 1.51317 * 110.20934 * 184.47304 * 6 5 4 9 9 C 1.55633 * 104.47909 * 14.71572 * 8 6 5 10 10 H 1.09003 * 110.89227 * 93.59329 * 9 8 6 11 11 C 1.50709 * 111.51962 * 217.75693 * 9 8 6 12 12 H 1.07999 * 119.99768 * 111.90364 * 11 9 8 13 13 C 1.37871 * 119.99900 * 291.89980 * 11 9 8 14 14 N 1.31513 * 119.99975 * 179.97438 * 13 11 9 15 15 Si 1.86796 * 120.00338 * 0.02562 * 13 11 9 16 16 H 1.48510 * 109.47228 * 89.99607 * 15 13 11 17 17 H 1.48502 * 109.47484 * 209.99881 * 15 13 11 18 18 H 1.48501 * 109.47341 * 330.00137 * 15 13 11 19 19 C 1.46757 * 123.86238 * 318.78967 * 5 4 3 20 20 H 1.08999 * 109.92480 * 278.02387 * 19 5 4 21 21 C 1.46578 * 111.00245 * 234.43208 * 2 1 3 22 22 H 1.09001 * 109.46544 * 185.56945 * 1 2 3 23 23 H 1.09001 * 109.47272 * 305.56552 * 1 2 3 24 24 H 1.09000 * 109.47033 * 65.57001 * 1 2 3 25 25 H 1.08997 * 109.43673 * 290.02932 * 3 2 1 26 26 H 1.09007 * 109.43173 * 49.89656 * 3 2 1 27 27 H 1.08996 * 109.75044 * 290.38994 * 4 3 2 28 28 H 1.08997 * 109.74442 * 169.65268 * 4 3 2 29 29 H 1.09003 * 110.47623 * 133.82421 * 8 6 5 30 30 H 1.08995 * 110.48314 * 256.32009 * 8 6 5 31 31 H 0.96998 * 120.00563 * 179.97438 * 14 13 11 32 32 H 1.09005 * 109.34814 * 307.43313 * 21 2 1 33 33 H 1.09001 * 109.34720 * 67.12103 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9947 1.3696 0.0000 4 6 3.5062 1.3423 0.2515 5 7 4.1048 0.3700 -0.6768 6 6 5.2361 0.5610 -1.3807 7 8 5.9569 1.5317 -1.2856 8 6 5.4793 -0.6103 -2.3073 9 6 4.1221 -1.3715 -2.3366 10 1 3.5090 -1.0409 -3.1751 11 6 4.3263 -2.8642 -2.3745 12 1 4.0478 -3.4690 -1.5242 13 6 4.8684 -3.4576 -3.4947 14 7 5.0470 -4.7602 -3.5275 15 14 5.3507 -2.4115 -4.9651 16 1 6.7620 -1.9728 -4.8191 17 1 5.2066 -3.2096 -6.2091 18 1 4.4670 -1.2202 -5.0363 19 6 3.5070 -0.9319 -0.9951 20 1 3.7553 -1.6546 -0.2179 21 6 1.9944 -0.7960 -1.1131 22 1 -0.3632 -1.0229 0.0997 23 1 -0.3634 0.5977 0.8360 24 1 -0.3633 0.4250 -0.9357 25 1 1.7961 1.8343 -0.9657 26 1 1.5065 1.9454 0.7863 27 1 3.7030 1.0392 1.2798 28 1 3.9274 2.3313 0.0713 29 1 5.7460 -0.2590 -3.3041 30 1 6.2623 -1.2555 -1.9091 31 1 5.4281 -5.1778 -4.3157 32 1 1.5402 -1.7867 -1.0946 33 1 1.7505 -0.3046 -2.0551 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259622751.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:34 Heat of formation + Delta-G solvation = -44.201412 kcal Electronic energy + Delta-G solvation = -16129.220546 eV Core-core repulsion = 13574.931668 eV Total energy + Delta-G solvation = -2554.288878 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.74077 -38.91184 -37.06243 -35.06052 -33.70300 -30.82832 -30.14798 -27.62034 -25.36032 -24.78834 -22.24155 -21.96487 -20.25667 -18.76682 -17.79512 -17.15667 -16.40026 -16.26803 -16.03384 -15.69415 -15.54483 -14.85051 -14.70148 -14.45017 -14.34410 -13.20705 -13.05291 -12.98868 -12.86486 -12.68594 -12.52653 -12.28843 -12.05380 -11.81833 -11.54509 -11.38186 -10.87767 -10.63440 -9.81142 -9.24000 -8.29647 -6.35434 1.35965 1.39585 1.44776 1.52340 2.02602 2.33451 2.90150 3.03099 3.52304 3.77321 3.90417 4.04550 4.15513 4.27747 4.33582 4.42946 4.49346 4.64130 4.69034 4.74262 4.76464 4.85926 4.94472 5.06195 5.09170 5.34238 5.55900 5.64178 5.96919 6.03149 6.15593 6.28856 6.71326 7.13770 7.30980 8.85575 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.029266 B = 0.010520 C = 0.008490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.513363 B = 2661.054535 C = 3297.339444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.559 5.559 3 C 0.050 3.950 4 C 0.124 3.876 5 N -0.611 5.611 6 C 0.518 3.482 7 O -0.584 6.584 8 C -0.165 4.165 9 C 0.018 3.982 10 H 0.053 0.947 11 C -0.506 4.506 12 H 0.052 0.948 13 C 0.029 3.971 14 N -0.938 5.938 15 Si 0.922 3.078 16 H -0.268 1.268 17 H -0.289 1.289 18 H -0.245 1.245 19 C 0.154 3.846 20 H 0.071 0.929 21 C 0.065 3.935 22 H 0.072 0.928 23 H 0.088 0.912 24 H 0.027 0.973 25 H 0.033 0.967 26 H 0.119 0.881 27 H 0.081 0.919 28 H 0.088 0.912 29 H 0.083 0.917 30 H 0.097 0.903 31 H 0.268 0.732 32 H 0.091 0.909 33 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.012 10.839 5.138 15.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 N -0.284 5.284 3 C -0.078 4.078 4 C 0.003 3.997 5 N -0.344 5.344 6 C 0.307 3.693 7 O -0.466 6.466 8 C -0.206 4.206 9 C -0.002 4.002 10 H 0.071 0.929 11 C -0.544 4.544 12 H 0.070 0.930 13 C -0.170 4.170 14 N -0.577 5.577 15 Si 0.747 3.253 16 H -0.193 1.193 17 H -0.215 1.215 18 H -0.169 1.169 19 C 0.050 3.950 20 H 0.089 0.911 21 C -0.063 4.063 22 H 0.091 0.909 23 H 0.107 0.893 24 H 0.046 0.954 25 H 0.051 0.949 26 H 0.137 0.863 27 H 0.099 0.901 28 H 0.107 0.893 29 H 0.101 0.899 30 H 0.115 0.885 31 H 0.077 0.923 32 H 0.109 0.891 33 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -8.493 11.029 5.601 15.005 hybrid contribution 0.360 0.156 -1.569 1.618 sum -8.133 11.184 4.032 14.405 Atomic orbital electron populations 1.22402 0.84915 1.03217 1.01225 1.61332 1.09471 1.13177 1.44427 1.22412 0.93894 0.89595 1.01894 1.21843 0.92891 0.91974 0.92960 1.48691 1.24113 1.18797 1.42792 1.21243 0.80430 0.86870 0.80738 1.90592 1.51226 1.34662 1.70095 1.23029 1.02740 0.95760 0.99052 1.20201 0.91383 0.94678 0.93901 0.92914 1.20928 1.41489 0.90177 1.01824 0.93029 1.25639 0.94929 0.95527 1.00891 1.69997 1.45762 1.11177 1.30774 0.86160 0.80041 0.79827 0.79280 1.19343 1.21486 1.16864 1.21474 0.92951 0.82852 0.97701 0.91069 1.22052 0.93322 0.99176 0.91770 0.90916 0.89291 0.95440 0.94893 0.86346 0.90094 0.89343 0.89908 0.88486 0.92308 0.89093 0.94838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.56 9.58 127.69 1.22 1.78 16 2 N -0.56 -14.13 4.81 -924.70 -4.45 -18.58 16 3 C 0.05 1.13 5.63 86.42 0.49 1.61 16 4 C 0.12 3.39 6.99 86.34 0.60 4.00 16 5 N -0.61 -21.76 3.16 -793.91 -2.51 -24.26 16 6 C 0.52 21.33 8.05 87.88 0.71 22.04 16 7 O -0.58 -26.59 17.56 -3.01 -0.05 -26.65 16 8 C -0.17 -6.99 5.12 30.95 0.16 -6.84 16 9 C 0.02 0.78 2.02 -10.29 -0.02 0.76 16 10 H 0.05 2.23 6.55 -2.39 -0.02 2.22 16 11 C -0.51 -26.11 8.99 25.60 0.23 -25.88 16 12 H 0.05 2.92 7.85 -2.91 -0.02 2.90 16 13 C 0.03 1.58 5.47 84.65 0.46 2.04 16 14 N -0.94 -54.97 13.96 21.44 0.30 -54.68 16 15 Si 0.92 41.54 25.20 68.60 1.73 43.27 16 16 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 17 H -0.29 -12.98 7.11 99.48 0.71 -12.27 16 18 H -0.24 -10.20 6.44 99.48 0.64 -9.56 16 19 C 0.15 5.69 3.25 45.05 0.15 5.83 16 20 H 0.07 2.85 7.74 -2.39 -0.02 2.83 16 21 C 0.07 2.03 5.02 86.14 0.43 2.46 16 22 H 0.07 1.35 8.13 -2.39 -0.02 1.33 16 23 H 0.09 1.28 8.02 -2.39 -0.02 1.26 16 24 H 0.03 0.50 8.14 -2.39 -0.02 0.48 16 25 H 0.03 0.77 8.14 -2.39 -0.02 0.76 16 26 H 0.12 1.87 7.99 -2.38 -0.02 1.85 16 27 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 28 H 0.09 2.37 7.81 -2.39 -0.02 2.35 16 29 H 0.08 3.41 6.44 -2.39 -0.02 3.40 16 30 H 0.10 4.28 7.90 -2.39 -0.02 4.26 16 31 H 0.27 14.80 8.31 -92.71 -0.77 14.03 16 32 H 0.09 2.85 8.10 -2.38 -0.02 2.83 16 33 H 0.03 1.05 7.77 -2.39 -0.02 1.03 16 Total: -1.00 -62.99 262.50 0.47 -62.52 By element: Atomic # 1 Polarization: 9.55 SS G_CDS: 1.02 Total: 10.57 kcal Atomic # 6 Polarization: 3.38 SS G_CDS: 4.43 Total: 7.81 kcal Atomic # 7 Polarization: -90.86 SS G_CDS: -6.66 Total: -97.52 kcal Atomic # 8 Polarization: -26.59 SS G_CDS: -0.05 Total: -26.65 kcal Atomic # 14 Polarization: 41.54 SS G_CDS: 1.73 Total: 43.27 kcal Total: -62.99 0.47 -62.52 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259622751.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.314 kcal (2) G-P(sol) polarization free energy of solvation -62.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds