Wall clock time and date at job start Mon Mar 30 2020 03:21:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46908 * 1 3 3 C 1.46666 * 110.99942 * 2 1 4 4 C 1.53695 * 110.28274 * 187.87539 * 3 2 1 5 5 N 1.47500 * 106.63462 * 309.60952 * 4 3 2 6 6 C 1.33593 * 127.51356 * 234.87714 * 5 4 3 7 7 O 1.21282 * 125.37801 * 338.89878 * 6 5 4 8 8 C 1.51499 * 109.25441 * 158.90186 * 6 5 4 9 9 C 1.54529 * 104.23242 * 23.69865 * 8 6 5 10 10 H 1.09000 * 110.68824 * 221.37810 * 9 8 6 11 11 C 1.50699 * 110.69095 * 98.18714 * 9 8 6 12 12 H 1.08009 * 120.00006 * 246.31034 * 11 9 8 13 13 C 1.37871 * 120.00113 * 66.30424 * 11 9 8 14 14 N 1.31519 * 120.00189 * 0.02562 * 13 11 9 15 15 Si 1.86799 * 120.00115 * 180.02562 * 13 11 9 16 16 H 1.48502 * 109.47176 * 59.99946 * 15 13 11 17 17 H 1.48503 * 109.47347 * 180.02562 * 15 13 11 18 18 H 1.48499 * 109.47103 * 300.00309 * 15 13 11 19 19 C 1.47632 * 120.96308 * 50.50004 * 5 4 3 20 20 H 1.09002 * 110.43232 * 66.19280 * 19 5 4 21 21 C 1.47398 * 110.99928 * 125.76834 * 2 1 3 22 22 H 1.09000 * 109.46664 * 294.23352 * 1 2 3 23 23 H 1.08999 * 109.47121 * 54.23000 * 1 2 3 24 24 H 1.08994 * 109.47019 * 174.23817 * 1 2 3 25 25 H 1.08994 * 109.33736 * 308.12472 * 3 2 1 26 26 H 1.08995 * 109.33384 * 67.79259 * 3 2 1 27 27 H 1.08997 * 110.01482 * 68.89134 * 4 3 2 28 28 H 1.09004 * 110.01238 * 190.32811 * 4 3 2 29 29 H 1.08999 * 110.48227 * 142.38784 * 8 6 5 30 30 H 1.08996 * 110.47931 * 265.00979 * 8 6 5 31 31 H 0.96999 * 120.00071 * 179.97438 * 14 13 11 32 32 H 1.09001 * 109.79960 * 50.41423 * 21 2 1 33 33 H 1.08994 * 109.79674 * 289.55085 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9947 1.3693 0.0000 4 6 3.5188 1.3549 -0.1975 5 7 4.0628 0.3976 0.7839 6 6 5.0077 0.6216 1.7013 7 8 5.8265 1.5155 1.6622 8 6 4.8952 -0.4171 2.7984 9 6 4.1815 -1.6089 2.1214 10 1 3.4374 -2.0422 2.7898 11 6 5.1801 -2.6506 1.6871 12 1 5.3321 -2.8479 0.6361 13 6 5.8999 -3.3516 2.6312 14 7 5.7145 -3.1117 3.9110 15 14 7.1382 -4.6423 2.0927 16 1 8.1800 -4.0063 1.2470 17 1 7.7740 -5.2483 3.2902 18 1 6.4447 -5.6988 1.3130 19 6 3.5069 -0.9647 0.9048 20 1 3.7043 -1.5380 -0.0010 21 6 1.9973 -0.8043 1.1165 22 1 -0.3632 0.4218 0.9371 23 1 -0.3633 0.6007 -0.8338 24 1 -0.3633 -1.0224 -0.1032 25 1 1.5312 1.9337 -0.8090 26 1 1.7611 1.8454 0.9522 27 1 3.7608 1.0300 -1.2094 28 1 3.9279 2.3488 -0.0157 29 1 5.8848 -0.7130 3.1465 30 1 4.2975 -0.0347 3.6258 31 1 6.2206 -3.6052 4.5752 32 1 1.5195 -1.7840 1.1243 33 1 1.8092 -0.2935 2.0608 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259622754.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:36 Heat of formation + Delta-G solvation = -23.852371 kcal Electronic energy + Delta-G solvation = -16120.906138 eV Core-core repulsion = 13567.499661 eV Total energy + Delta-G solvation = -2553.406477 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.02279 -37.27932 -35.26398 -33.28606 -31.72307 -28.84454 -28.38382 -25.95825 -24.04343 -23.29951 -20.96755 -20.07732 -18.49644 -16.56504 -15.86930 -15.11573 -14.93223 -14.86080 -14.62247 -14.24102 -14.10706 -13.06689 -12.88707 -12.48368 -12.10146 -11.93147 -11.68995 -11.52044 -11.23162 -10.89357 -10.85369 -10.75262 -10.60263 -10.30981 -9.52022 -9.13580 -8.93926 -8.44616 -8.32680 -7.84193 -6.13224 -4.19021 3.29769 3.34578 3.37689 3.45318 3.68980 4.08894 4.37669 5.06887 5.14142 5.21654 5.28529 5.40416 5.52961 5.61487 5.75267 5.79738 5.85511 5.88271 6.05981 6.09709 6.24367 6.45696 6.53177 6.76946 7.12589 7.18697 7.35895 7.40916 7.57033 7.81064 7.96899 8.23235 8.82498 9.05863 9.47310 10.95510 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.033087 B = 0.009149 C = 0.008016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.049551 B = 3059.615471 C = 3492.245171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.550 5.550 3 C 0.046 3.954 4 C 0.132 3.868 5 N -0.628 5.628 6 C 0.530 3.470 7 O -0.561 6.561 8 C -0.136 4.136 9 C 0.052 3.948 10 H 0.054 0.946 11 C -0.519 4.519 12 H 0.060 0.940 13 C 0.066 3.934 14 N -0.886 5.886 15 Si 0.895 3.105 16 H -0.276 1.276 17 H -0.286 1.286 18 H -0.275 1.275 19 C 0.143 3.857 20 H 0.084 0.916 21 C 0.049 3.951 22 H 0.021 0.979 23 H 0.063 0.937 24 H 0.068 0.932 25 H 0.079 0.921 26 H 0.032 0.968 27 H 0.070 0.930 28 H 0.082 0.918 29 H 0.105 0.895 30 H 0.071 0.929 31 H 0.264 0.736 32 H 0.085 0.915 33 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.503 4.679 -5.382 11.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.275 5.275 3 C -0.083 4.083 4 C 0.009 3.991 5 N -0.363 5.363 6 C 0.320 3.680 7 O -0.441 6.441 8 C -0.177 4.177 9 C 0.033 3.967 10 H 0.072 0.928 11 C -0.556 4.556 12 H 0.079 0.921 13 C -0.137 4.137 14 N -0.523 5.523 15 Si 0.722 3.278 16 H -0.201 1.201 17 H -0.212 1.212 18 H -0.201 1.201 19 C 0.039 3.961 20 H 0.102 0.898 21 C -0.079 4.079 22 H 0.040 0.960 23 H 0.082 0.918 24 H 0.087 0.913 25 H 0.098 0.902 26 H 0.051 0.949 27 H 0.088 0.912 28 H 0.101 0.899 29 H 0.123 0.877 30 H 0.089 0.911 31 H 0.074 0.926 32 H 0.103 0.897 33 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -8.850 4.938 -5.700 11.627 hybrid contribution 0.292 -0.298 0.490 0.643 sum -8.558 4.639 -5.210 11.041 Atomic orbital electron populations 1.22320 0.87551 1.02203 0.99882 1.61619 1.07214 1.12905 1.45747 1.22463 0.95793 0.89617 1.00441 1.21657 0.91367 0.93237 0.92819 1.48673 1.38328 1.14452 1.34839 1.21358 0.78545 0.84708 0.83345 1.90581 1.37285 1.37406 1.78804 1.22462 1.05143 0.95122 0.94927 1.19319 0.95110 0.92004 0.90255 0.92832 1.21041 1.21969 1.19530 0.93109 0.92133 1.24963 0.96913 0.96952 0.94873 1.69935 1.41160 1.41294 0.99919 0.86606 0.81485 0.81613 0.78078 1.20146 1.21200 1.20085 1.22244 0.90084 0.81743 1.02011 0.89845 1.22769 0.96674 0.97638 0.90823 0.96019 0.91806 0.91272 0.90243 0.94926 0.91189 0.89920 0.87692 0.91076 0.92617 0.89654 0.94418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 9.59 60.07 0.58 0.90 16 2 N -0.55 -7.95 4.78 -242.06 -1.16 -9.11 16 3 C 0.05 0.62 5.61 -3.59 -0.02 0.60 16 4 C 0.13 2.11 7.12 -3.13 -0.02 2.09 16 5 N -0.63 -12.55 2.98 -163.69 -0.49 -13.04 16 6 C 0.53 12.32 8.02 -11.12 -0.09 12.23 16 7 O -0.56 -14.46 17.87 5.56 0.10 -14.36 16 8 C -0.14 -3.20 6.07 -26.69 -0.16 -3.36 16 9 C 0.05 1.21 2.57 -90.81 -0.23 0.98 16 10 H 0.05 1.28 7.82 -51.93 -0.41 0.87 16 11 C -0.52 -13.46 8.47 -34.44 -0.29 -13.75 16 12 H 0.06 1.57 7.46 -52.48 -0.39 1.18 16 13 C 0.07 1.75 5.12 -17.82 -0.09 1.66 16 14 N -0.89 -24.22 12.36 55.43 0.69 -23.53 16 15 Si 0.89 20.75 29.54 -169.99 -5.02 15.73 16 16 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 17 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 18 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 19 C 0.14 2.82 3.34 -67.01 -0.22 2.59 16 20 H 0.08 1.72 7.56 -51.93 -0.39 1.33 16 21 C 0.05 0.81 4.96 -3.41 -0.02 0.79 16 22 H 0.02 0.24 8.14 -51.93 -0.42 -0.18 16 23 H 0.06 0.62 8.03 -51.93 -0.42 0.20 16 24 H 0.07 0.74 8.13 -51.93 -0.42 0.31 16 25 H 0.08 0.88 8.02 -51.93 -0.42 0.46 16 26 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 28 H 0.08 1.29 8.03 -51.93 -0.42 0.87 16 29 H 0.10 2.78 6.98 -51.93 -0.36 2.42 16 30 H 0.07 1.56 8.14 -51.93 -0.42 1.14 16 31 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 32 H 0.09 1.32 8.09 -51.93 -0.42 0.90 16 33 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 LS Contribution 268.86 15.07 4.05 4.05 Total: -1.00 -29.37 268.86 -7.30 -36.67 By element: Atomic # 1 Polarization: 3.76 SS G_CDS: -4.89 Total: -1.13 kcal Atomic # 6 Polarization: 5.30 SS G_CDS: -0.58 Total: 4.73 kcal Atomic # 7 Polarization: -44.72 SS G_CDS: -0.96 Total: -45.68 kcal Atomic # 8 Polarization: -14.46 SS G_CDS: 0.10 Total: -14.36 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -29.37 -7.30 -36.67 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259622754.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.818 kcal (2) G-P(sol) polarization free energy of solvation -29.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds