Wall clock time and date at job start Mon Mar 30 2020 03:21:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46908 * 1 3 3 C 1.46666 * 110.99942 * 2 1 4 4 C 1.53695 * 110.28274 * 187.87539 * 3 2 1 5 5 N 1.47500 * 106.63462 * 309.60952 * 4 3 2 6 6 C 1.33593 * 127.51356 * 234.87714 * 5 4 3 7 7 O 1.21282 * 125.37801 * 338.89878 * 6 5 4 8 8 C 1.51499 * 109.25441 * 158.90186 * 6 5 4 9 9 C 1.54529 * 104.23242 * 23.69865 * 8 6 5 10 10 H 1.09000 * 110.68824 * 221.37810 * 9 8 6 11 11 C 1.50699 * 110.69095 * 98.18714 * 9 8 6 12 12 H 1.08009 * 120.00006 * 246.31034 * 11 9 8 13 13 C 1.37871 * 120.00113 * 66.30424 * 11 9 8 14 14 N 1.31519 * 120.00189 * 0.02562 * 13 11 9 15 15 Si 1.86799 * 120.00115 * 180.02562 * 13 11 9 16 16 H 1.48502 * 109.47176 * 59.99946 * 15 13 11 17 17 H 1.48503 * 109.47347 * 180.02562 * 15 13 11 18 18 H 1.48499 * 109.47103 * 300.00309 * 15 13 11 19 19 C 1.47632 * 120.96308 * 50.50004 * 5 4 3 20 20 H 1.09002 * 110.43232 * 66.19280 * 19 5 4 21 21 C 1.47398 * 110.99928 * 125.76834 * 2 1 3 22 22 H 1.09000 * 109.46664 * 294.23352 * 1 2 3 23 23 H 1.08999 * 109.47121 * 54.23000 * 1 2 3 24 24 H 1.08994 * 109.47019 * 174.23817 * 1 2 3 25 25 H 1.08994 * 109.33736 * 308.12472 * 3 2 1 26 26 H 1.08995 * 109.33384 * 67.79259 * 3 2 1 27 27 H 1.08997 * 110.01482 * 68.89134 * 4 3 2 28 28 H 1.09004 * 110.01238 * 190.32811 * 4 3 2 29 29 H 1.08999 * 110.48227 * 142.38784 * 8 6 5 30 30 H 1.08996 * 110.47931 * 265.00979 * 8 6 5 31 31 H 0.96999 * 120.00071 * 179.97438 * 14 13 11 32 32 H 1.09001 * 109.79960 * 50.41423 * 21 2 1 33 33 H 1.08994 * 109.79674 * 289.55085 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9947 1.3693 0.0000 4 6 3.5188 1.3549 -0.1975 5 7 4.0628 0.3976 0.7839 6 6 5.0077 0.6216 1.7013 7 8 5.8265 1.5155 1.6622 8 6 4.8952 -0.4171 2.7984 9 6 4.1815 -1.6089 2.1214 10 1 3.4374 -2.0422 2.7898 11 6 5.1801 -2.6506 1.6871 12 1 5.3321 -2.8479 0.6361 13 6 5.8999 -3.3516 2.6312 14 7 5.7145 -3.1117 3.9110 15 14 7.1382 -4.6423 2.0927 16 1 8.1800 -4.0063 1.2470 17 1 7.7740 -5.2483 3.2902 18 1 6.4447 -5.6988 1.3130 19 6 3.5069 -0.9647 0.9048 20 1 3.7043 -1.5380 -0.0010 21 6 1.9973 -0.8043 1.1165 22 1 -0.3632 0.4218 0.9371 23 1 -0.3633 0.6007 -0.8338 24 1 -0.3633 -1.0224 -0.1032 25 1 1.5312 1.9337 -0.8090 26 1 1.7611 1.8454 0.9522 27 1 3.7608 1.0300 -1.2094 28 1 3.9279 2.3488 -0.0157 29 1 5.8848 -0.7130 3.1465 30 1 4.2975 -0.0347 3.6258 31 1 6.2206 -3.6052 4.5752 32 1 1.5195 -1.7840 1.1243 33 1 1.8092 -0.2935 2.0608 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259622754.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:35 Heat of formation + Delta-G solvation = -43.991340 kcal Electronic energy + Delta-G solvation = -16121.779429 eV Core-core repulsion = 13567.499661 eV Total energy + Delta-G solvation = -2554.279768 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.66177 -38.78572 -36.93466 -35.00102 -33.40403 -30.39840 -29.84568 -27.66532 -25.50877 -24.70748 -22.35520 -21.83018 -20.13235 -18.45357 -17.50881 -16.79139 -16.55943 -16.27320 -16.10661 -15.64003 -15.45155 -14.71242 -14.42156 -14.25004 -13.70595 -13.30650 -13.04779 -12.85188 -12.72932 -12.66652 -12.53133 -12.30185 -12.19162 -12.02172 -11.30161 -11.09320 -10.83517 -10.40763 -9.71561 -9.19831 -8.16435 -6.27372 1.44015 1.45930 1.52405 1.61674 2.15719 2.42805 2.94542 3.15326 3.69148 3.90972 4.02999 4.17431 4.24255 4.37329 4.44297 4.61920 4.63641 4.68039 4.74294 4.77010 4.82284 4.89931 5.07449 5.10194 5.47599 5.61193 5.73833 5.78341 6.02890 6.08065 6.18625 6.33412 6.79490 7.26626 7.41784 8.91645 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.033087 B = 0.009149 C = 0.008016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.049551 B = 3059.615471 C = 3492.245171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.558 5.558 3 C 0.052 3.948 4 C 0.123 3.877 5 N -0.621 5.621 6 C 0.524 3.476 7 O -0.594 6.594 8 C -0.132 4.132 9 C 0.051 3.949 10 H 0.044 0.956 11 C -0.533 4.533 12 H 0.057 0.943 13 C 0.021 3.979 14 N -0.911 5.911 15 Si 0.950 3.050 16 H -0.280 1.280 17 H -0.284 1.284 18 H -0.264 1.264 19 C 0.148 3.852 20 H 0.077 0.923 21 C 0.059 3.941 22 H 0.025 0.975 23 H 0.086 0.914 24 H 0.075 0.925 25 H 0.116 0.884 26 H 0.029 0.971 27 H 0.082 0.918 28 H 0.086 0.914 29 H 0.070 0.930 30 H 0.081 0.919 31 H 0.264 0.736 32 H 0.095 0.905 33 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.101 4.814 -6.846 13.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 N -0.283 5.283 3 C -0.077 4.077 4 C 0.003 3.997 5 N -0.354 5.354 6 C 0.315 3.685 7 O -0.476 6.476 8 C -0.172 4.172 9 C 0.031 3.969 10 H 0.062 0.938 11 C -0.571 4.571 12 H 0.075 0.925 13 C -0.180 4.180 14 N -0.549 5.549 15 Si 0.776 3.224 16 H -0.206 1.206 17 H -0.209 1.209 18 H -0.189 1.189 19 C 0.045 3.955 20 H 0.095 0.905 21 C -0.069 4.069 22 H 0.043 0.957 23 H 0.104 0.896 24 H 0.094 0.906 25 H 0.134 0.866 26 H 0.047 0.953 27 H 0.100 0.900 28 H 0.104 0.896 29 H 0.088 0.912 30 H 0.099 0.901 31 H 0.073 0.927 32 H 0.114 0.886 33 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -10.498 5.065 -7.198 13.699 hybrid contribution 0.756 -0.323 0.910 1.226 sum -9.742 4.741 -6.288 12.527 Atomic orbital electron populations 1.22403 0.85129 1.03273 1.01020 1.61602 1.09312 1.13037 1.44361 1.22471 0.93813 0.89643 1.01735 1.22019 0.93191 0.92373 0.92164 1.48742 1.37098 1.15095 1.34475 1.21220 0.79042 0.84212 0.84060 1.90552 1.38710 1.38640 1.79724 1.22317 1.03397 0.95738 0.95789 1.19219 0.94590 0.91468 0.91579 0.93755 1.21368 1.22571 1.20174 0.92951 0.92515 1.25657 0.98532 0.98795 0.94986 1.70030 1.42054 1.42183 1.00673 0.85728 0.79334 0.79644 0.77697 1.20610 1.20919 1.18895 1.22060 0.92373 0.81168 0.99930 0.90500 1.22556 0.94029 0.98803 0.91532 0.95652 0.89559 0.90607 0.86596 0.95257 0.89997 0.89578 0.91186 0.90085 0.92702 0.88641 0.94902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.54 9.59 127.69 1.22 1.77 16 2 N -0.56 -14.27 4.78 -919.73 -4.40 -18.67 16 3 C 0.05 1.23 5.61 86.58 0.49 1.72 16 4 C 0.12 3.67 7.12 86.42 0.62 4.29 16 5 N -0.62 -24.27 2.98 -790.83 -2.35 -26.62 16 6 C 0.52 24.59 8.02 88.10 0.71 25.30 16 7 O -0.59 -31.01 17.87 -3.04 -0.05 -31.06 16 8 C -0.13 -6.34 6.07 30.62 0.19 -6.16 16 9 C 0.05 2.38 2.57 -10.92 -0.03 2.35 16 10 H 0.04 2.14 7.82 -2.39 -0.02 2.12 16 11 C -0.53 -27.93 8.47 25.60 0.22 -27.72 16 12 H 0.06 2.95 7.46 -2.91 -0.02 2.93 16 13 C 0.02 1.10 5.12 84.65 0.43 1.54 16 14 N -0.91 -50.67 12.36 21.45 0.27 -50.41 16 15 Si 0.95 42.71 29.54 68.60 2.03 44.74 16 16 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 17 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 18 H -0.26 -11.32 7.11 99.48 0.71 -10.62 16 19 C 0.15 5.73 3.34 44.97 0.15 5.88 16 20 H 0.08 3.10 7.56 -2.39 -0.02 3.09 16 21 C 0.06 1.83 4.96 86.30 0.43 2.26 16 22 H 0.02 0.46 8.14 -2.39 -0.02 0.45 16 23 H 0.09 1.26 8.03 -2.39 -0.02 1.24 16 24 H 0.08 1.33 8.13 -2.39 -0.02 1.31 16 25 H 0.12 1.98 8.02 -2.39 -0.02 1.97 16 26 H 0.03 0.73 8.14 -2.39 -0.02 0.72 16 27 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 28 H 0.09 2.52 8.03 -2.38 -0.02 2.50 16 29 H 0.07 3.86 6.98 -2.39 -0.02 3.84 16 30 H 0.08 3.65 8.14 -2.39 -0.02 3.63 16 31 H 0.26 14.08 8.31 -92.71 -0.77 13.31 16 32 H 0.10 2.75 8.09 -2.39 -0.02 2.74 16 33 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 Total: -1.00 -63.14 268.86 0.99 -62.15 By element: Atomic # 1 Polarization: 7.57 SS G_CDS: 1.08 Total: 8.65 kcal Atomic # 6 Polarization: 6.80 SS G_CDS: 4.42 Total: 11.22 kcal Atomic # 7 Polarization: -89.21 SS G_CDS: -6.49 Total: -95.70 kcal Atomic # 8 Polarization: -31.01 SS G_CDS: -0.05 Total: -31.06 kcal Atomic # 14 Polarization: 42.71 SS G_CDS: 2.03 Total: 44.74 kcal Total: -63.14 0.99 -62.15 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259622754.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.164 kcal (2) G-P(sol) polarization free energy of solvation -63.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds