Wall clock time and date at job start Mon Mar 30 2020 03:21:35
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46908 * 1
3 3 C 1.46666 * 110.99942 * 2 1
4 4 C 1.53695 * 110.28274 * 187.87539 * 3 2 1
5 5 N 1.47500 * 106.63462 * 309.60952 * 4 3 2
6 6 C 1.33593 * 127.51356 * 234.87714 * 5 4 3
7 7 O 1.21282 * 125.37801 * 338.89878 * 6 5 4
8 8 C 1.51499 * 109.25441 * 158.90186 * 6 5 4
9 9 C 1.54529 * 104.23242 * 23.69865 * 8 6 5
10 10 H 1.09000 * 110.68824 * 221.37810 * 9 8 6
11 11 C 1.50699 * 110.69095 * 98.18714 * 9 8 6
12 12 H 1.08009 * 120.00006 * 246.31034 * 11 9 8
13 13 C 1.37871 * 120.00113 * 66.30424 * 11 9 8
14 14 N 1.31519 * 120.00189 * 0.02562 * 13 11 9
15 15 Si 1.86799 * 120.00115 * 180.02562 * 13 11 9
16 16 H 1.48502 * 109.47176 * 59.99946 * 15 13 11
17 17 H 1.48503 * 109.47347 * 180.02562 * 15 13 11
18 18 H 1.48499 * 109.47103 * 300.00309 * 15 13 11
19 19 C 1.47632 * 120.96308 * 50.50004 * 5 4 3
20 20 H 1.09002 * 110.43232 * 66.19280 * 19 5 4
21 21 C 1.47398 * 110.99928 * 125.76834 * 2 1 3
22 22 H 1.09000 * 109.46664 * 294.23352 * 1 2 3
23 23 H 1.08999 * 109.47121 * 54.23000 * 1 2 3
24 24 H 1.08994 * 109.47019 * 174.23817 * 1 2 3
25 25 H 1.08994 * 109.33736 * 308.12472 * 3 2 1
26 26 H 1.08995 * 109.33384 * 67.79259 * 3 2 1
27 27 H 1.08997 * 110.01482 * 68.89134 * 4 3 2
28 28 H 1.09004 * 110.01238 * 190.32811 * 4 3 2
29 29 H 1.08999 * 110.48227 * 142.38784 * 8 6 5
30 30 H 1.08996 * 110.47931 * 265.00979 * 8 6 5
31 31 H 0.96999 * 120.00071 * 179.97438 * 14 13 11
32 32 H 1.09001 * 109.79960 * 50.41423 * 21 2 1
33 33 H 1.08994 * 109.79674 * 289.55085 * 21 2 1
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4691 0.0000 0.0000
3 6 1.9947 1.3693 0.0000
4 6 3.5188 1.3549 -0.1975
5 7 4.0628 0.3976 0.7839
6 6 5.0077 0.6216 1.7013
7 8 5.8265 1.5155 1.6622
8 6 4.8952 -0.4171 2.7984
9 6 4.1815 -1.6089 2.1214
10 1 3.4374 -2.0422 2.7898
11 6 5.1801 -2.6506 1.6871
12 1 5.3321 -2.8479 0.6361
13 6 5.8999 -3.3516 2.6312
14 7 5.7145 -3.1117 3.9110
15 14 7.1382 -4.6423 2.0927
16 1 8.1800 -4.0063 1.2470
17 1 7.7740 -5.2483 3.2902
18 1 6.4447 -5.6988 1.3130
19 6 3.5069 -0.9647 0.9048
20 1 3.7043 -1.5380 -0.0010
21 6 1.9973 -0.8043 1.1165
22 1 -0.3632 0.4218 0.9371
23 1 -0.3633 0.6007 -0.8338
24 1 -0.3633 -1.0224 -0.1032
25 1 1.5312 1.9337 -0.8090
26 1 1.7611 1.8454 0.9522
27 1 3.7608 1.0300 -1.2094
28 1 3.9279 2.3488 -0.0157
29 1 5.8848 -0.7130 3.1465
30 1 4.2975 -0.0347 3.6258
31 1 6.2206 -3.6052 4.5752
32 1 1.5195 -1.7840 1.1243
33 1 1.8092 -0.2935 2.0608
RHF calculation, no. of doubly occupied orbitals= 42
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000259622754.mol2 33
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:21:35
Heat of formation + Delta-G solvation = -43.991340 kcal
Electronic energy + Delta-G solvation = -16121.779429 eV
Core-core repulsion = 13567.499661 eV
Total energy + Delta-G solvation = -2554.279768 eV
No. of doubly occupied orbitals = 42
Molecular weight
(most abundant/longest-lived isotopes) = 224.127 amu
Computer time = 0.25 seconds
Orbital eigenvalues (eV)
-41.66177 -38.78572 -36.93466 -35.00102 -33.40403 -30.39840 -29.84568 -27.66532
-25.50877 -24.70748 -22.35520 -21.83018 -20.13235 -18.45357 -17.50881 -16.79139
-16.55943 -16.27320 -16.10661 -15.64003 -15.45155 -14.71242 -14.42156 -14.25004
-13.70595 -13.30650 -13.04779 -12.85188 -12.72932 -12.66652 -12.53133 -12.30185
-12.19162 -12.02172 -11.30161 -11.09320 -10.83517 -10.40763 -9.71561 -9.19831
-8.16435 -6.27372 1.44015 1.45930 1.52405 1.61674 2.15719 2.42805
2.94542 3.15326 3.69148 3.90972 4.02999 4.17431 4.24255 4.37329
4.44297 4.61920 4.63641 4.68039 4.74294 4.77010 4.82284 4.89931
5.07449 5.10194 5.47599 5.61193 5.73833 5.78341 6.02890 6.08065
6.18625 6.33412 6.79490 7.26626 7.41784 8.91645
Molecular weight = 224.13amu
Principal moments of inertia in cm(-1)
A = 0.033087 B = 0.009149 C = 0.008016
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 846.049551 B = 3059.615471 C = 3492.245171
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.029 3.971
2 N -0.558 5.558
3 C 0.052 3.948
4 C 0.123 3.877
5 N -0.621 5.621
6 C 0.524 3.476
7 O -0.594 6.594
8 C -0.132 4.132
9 C 0.051 3.949
10 H 0.044 0.956
11 C -0.533 4.533
12 H 0.057 0.943
13 C 0.021 3.979
14 N -0.911 5.911
15 Si 0.950 3.050
16 H -0.280 1.280
17 H -0.284 1.284
18 H -0.264 1.264
19 C 0.148 3.852
20 H 0.077 0.923
21 C 0.059 3.941
22 H 0.025 0.975
23 H 0.086 0.914
24 H 0.075 0.925
25 H 0.116 0.884
26 H 0.029 0.971
27 H 0.082 0.918
28 H 0.086 0.914
29 H 0.070 0.930
30 H 0.081 0.919
31 H 0.264 0.736
32 H 0.095 0.905
33 H 0.033 0.967
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -11.101 4.814 -6.846 13.902
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.118 4.118
2 N -0.283 5.283
3 C -0.077 4.077
4 C 0.003 3.997
5 N -0.354 5.354
6 C 0.315 3.685
7 O -0.476 6.476
8 C -0.172 4.172
9 C 0.031 3.969
10 H 0.062 0.938
11 C -0.571 4.571
12 H 0.075 0.925
13 C -0.180 4.180
14 N -0.549 5.549
15 Si 0.776 3.224
16 H -0.206 1.206
17 H -0.209 1.209
18 H -0.189 1.189
19 C 0.045 3.955
20 H 0.095 0.905
21 C -0.069 4.069
22 H 0.043 0.957
23 H 0.104 0.896
24 H 0.094 0.906
25 H 0.134 0.866
26 H 0.047 0.953
27 H 0.100 0.900
28 H 0.104 0.896
29 H 0.088 0.912
30 H 0.099 0.901
31 H 0.073 0.927
32 H 0.114 0.886
33 H 0.051 0.949
Dipole moment (debyes) X Y Z Total
from point charges -10.498 5.065 -7.198 13.699
hybrid contribution 0.756 -0.323 0.910 1.226
sum -9.742 4.741 -6.288 12.527
Atomic orbital electron populations
1.22403 0.85129 1.03273 1.01020 1.61602 1.09312 1.13037 1.44361
1.22471 0.93813 0.89643 1.01735 1.22019 0.93191 0.92373 0.92164
1.48742 1.37098 1.15095 1.34475 1.21220 0.79042 0.84212 0.84060
1.90552 1.38710 1.38640 1.79724 1.22317 1.03397 0.95738 0.95789
1.19219 0.94590 0.91468 0.91579 0.93755 1.21368 1.22571 1.20174
0.92951 0.92515 1.25657 0.98532 0.98795 0.94986 1.70030 1.42054
1.42183 1.00673 0.85728 0.79334 0.79644 0.77697 1.20610 1.20919
1.18895 1.22060 0.92373 0.81168 0.99930 0.90500 1.22556 0.94029
0.98803 0.91532 0.95652 0.89559 0.90607 0.86596 0.95257 0.89997
0.89578 0.91186 0.90085 0.92702 0.88641 0.94902
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.54 9.59 127.69 1.22 1.77 16
2 N -0.56 -14.27 4.78 -919.73 -4.40 -18.67 16
3 C 0.05 1.23 5.61 86.58 0.49 1.72 16
4 C 0.12 3.67 7.12 86.42 0.62 4.29 16
5 N -0.62 -24.27 2.98 -790.83 -2.35 -26.62 16
6 C 0.52 24.59 8.02 88.10 0.71 25.30 16
7 O -0.59 -31.01 17.87 -3.04 -0.05 -31.06 16
8 C -0.13 -6.34 6.07 30.62 0.19 -6.16 16
9 C 0.05 2.38 2.57 -10.92 -0.03 2.35 16
10 H 0.04 2.14 7.82 -2.39 -0.02 2.12 16
11 C -0.53 -27.93 8.47 25.60 0.22 -27.72 16
12 H 0.06 2.95 7.46 -2.91 -0.02 2.93 16
13 C 0.02 1.10 5.12 84.65 0.43 1.54 16
14 N -0.91 -50.67 12.36 21.45 0.27 -50.41 16
15 Si 0.95 42.71 29.54 68.60 2.03 44.74 16
16 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16
17 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16
18 H -0.26 -11.32 7.11 99.48 0.71 -10.62 16
19 C 0.15 5.73 3.34 44.97 0.15 5.88 16
20 H 0.08 3.10 7.56 -2.39 -0.02 3.09 16
21 C 0.06 1.83 4.96 86.30 0.43 2.26 16
22 H 0.02 0.46 8.14 -2.39 -0.02 0.45 16
23 H 0.09 1.26 8.03 -2.39 -0.02 1.24 16
24 H 0.08 1.33 8.13 -2.39 -0.02 1.31 16
25 H 0.12 1.98 8.02 -2.39 -0.02 1.97 16
26 H 0.03 0.73 8.14 -2.39 -0.02 0.72 16
27 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16
28 H 0.09 2.52 8.03 -2.38 -0.02 2.50 16
29 H 0.07 3.86 6.98 -2.39 -0.02 3.84 16
30 H 0.08 3.65 8.14 -2.39 -0.02 3.63 16
31 H 0.26 14.08 8.31 -92.71 -0.77 13.31 16
32 H 0.10 2.75 8.09 -2.39 -0.02 2.74 16
33 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16
Total: -1.00 -63.14 268.86 0.99 -62.15
By element:
Atomic # 1 Polarization: 7.57 SS G_CDS: 1.08 Total: 8.65 kcal
Atomic # 6 Polarization: 6.80 SS G_CDS: 4.42 Total: 11.22 kcal
Atomic # 7 Polarization: -89.21 SS G_CDS: -6.49 Total: -95.70 kcal
Atomic # 8 Polarization: -31.01 SS G_CDS: -0.05 Total: -31.06 kcal
Atomic # 14 Polarization: 42.71 SS G_CDS: 2.03 Total: 44.74 kcal
Total: -63.14 0.99 -62.15 kcal
The number of atoms in the molecule is 33
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000259622754.mol2 33
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 18.164 kcal
(2) G-P(sol) polarization free energy of solvation -63.140 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.977 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.985 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.155 kcal
(6) G-S(sol) free energy of system = (1) + (5) -43.991 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.25 seconds