Wall clock time and date at job start Mon Mar 30 2020 03:21:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46665 * 110.99941 * 2 1 4 4 C 1.53848 * 109.98363 * 171.85771 * 3 2 1 5 5 N 1.47408 * 106.28895 * 51.83184 * 4 3 2 6 6 C 1.33527 * 128.30699 * 126.88718 * 5 4 3 7 7 O 1.21276 * 125.47536 * 21.05319 * 6 5 4 8 8 C 1.51558 * 109.04525 * 201.01686 * 6 5 4 9 9 C 1.54562 * 103.99846 * 334.26284 * 8 6 5 10 10 H 1.08996 * 110.69332 * 262.02825 * 9 8 6 11 11 C 1.50701 * 110.69553 * 139.00004 * 9 8 6 12 12 H 1.07999 * 120.00088 * 241.45702 * 11 9 8 13 13 C 1.37877 * 119.99684 * 61.45254 * 11 9 8 14 14 N 1.31516 * 120.00276 * 0.02562 * 13 11 9 15 15 Si 1.86804 * 119.99944 * 180.02562 * 13 11 9 16 16 H 1.48501 * 109.47196 * 90.00112 * 15 13 11 17 17 H 1.48502 * 109.47359 * 210.00110 * 15 13 11 18 18 H 1.48505 * 109.46997 * 330.00260 * 15 13 11 19 19 C 1.47850 * 120.64395 * 308.03294 * 5 4 3 20 20 H 1.08995 * 110.35127 * 293.77139 * 19 5 4 21 21 C 1.47156 * 110.99826 * 233.80014 * 2 1 3 22 22 H 1.08998 * 109.46993 * 186.19719 * 1 2 3 23 23 H 1.08997 * 109.47370 * 306.19939 * 1 2 3 24 24 H 1.09003 * 109.46951 * 66.20144 * 1 2 3 25 25 H 1.08998 * 109.38741 * 292.01820 * 3 2 1 26 26 H 1.08998 * 109.38302 * 51.80523 * 3 2 1 27 27 H 1.08997 * 110.08091 * 171.02564 * 4 3 2 28 28 H 1.08997 * 110.07794 * 292.63944 * 4 3 2 29 29 H 1.09000 * 110.52354 * 92.89168 * 8 6 5 30 30 H 1.09000 * 110.52263 * 215.49121 * 8 6 5 31 31 H 0.97000 * 120.00182 * 180.02562 * 14 13 11 32 32 H 1.08999 * 109.67572 * 308.61799 * 21 2 1 33 33 H 1.08995 * 109.67517 * 69.15021 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9946 1.3692 0.0000 4 6 3.5192 1.3472 0.2048 5 7 4.0577 0.4116 -0.7991 6 6 5.0246 0.6253 -1.6949 7 8 5.8741 1.4877 -1.6215 8 6 4.8902 -0.3839 -2.8177 9 6 4.1703 -1.5825 -2.1589 10 1 4.8876 -2.3493 -1.8666 11 6 3.1304 -2.1550 -3.0874 12 1 2.0900 -2.1561 -2.7979 13 6 3.5074 -2.6772 -4.3065 14 7 4.7745 -2.6762 -4.6588 15 14 2.2184 -3.3862 -5.4577 16 1 1.7117 -2.3153 -6.3531 17 1 2.8253 -4.4681 -6.2742 18 1 1.0936 -3.9388 -4.6611 19 6 3.5092 -0.9555 -0.9258 20 1 3.7284 -1.5364 -0.0301 21 6 1.9963 -0.8114 -1.1086 22 1 -0.3633 -1.0216 0.1109 23 1 -0.3634 0.6069 0.8293 24 1 -0.3633 0.4147 -0.9403 25 1 1.7644 1.8452 -0.9532 26 1 1.5307 1.9348 0.8081 27 1 3.9324 2.3435 0.0476 28 1 3.7569 0.9963 1.2090 29 1 4.2877 0.0250 -3.6288 30 1 5.8728 -0.6802 -3.1847 31 1 5.0397 -3.0432 -5.5166 32 1 1.5298 -1.7964 -1.0967 33 1 1.7868 -0.3171 -2.0572 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259622757.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:37 Heat of formation + Delta-G solvation = -18.857038 kcal Electronic energy + Delta-G solvation = -16262.192629 eV Core-core repulsion = 13709.002766 eV Total energy + Delta-G solvation = -2553.189863 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.03668 -37.24916 -35.25445 -33.40849 -31.63802 -28.85991 -28.38011 -25.73269 -24.06419 -23.26196 -21.11217 -20.00578 -18.39090 -16.44449 -15.85939 -15.03838 -14.92484 -14.76034 -14.66844 -14.24062 -13.96090 -13.12930 -12.88057 -12.35190 -12.26040 -11.81986 -11.70841 -11.46980 -11.07504 -10.96866 -10.82554 -10.73983 -10.46439 -10.20104 -9.50891 -9.34565 -8.78292 -8.47275 -8.20150 -7.78428 -6.16595 -4.22167 3.22362 3.30810 3.31435 3.37368 3.68596 4.22744 4.31687 5.14520 5.17200 5.25741 5.38819 5.51484 5.63944 5.71094 5.80815 5.90353 5.97663 6.01719 6.10244 6.19370 6.42405 6.53536 6.58083 6.85272 7.24803 7.30440 7.33866 7.42247 7.57487 7.79397 7.95496 8.15871 8.77353 9.00981 9.44083 10.92980 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.025873 B = 0.011472 C = 0.008441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.937913 B = 2440.082322 C = 3316.502072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.559 5.559 3 C 0.047 3.953 4 C 0.133 3.867 5 N -0.630 5.630 6 C 0.517 3.483 7 O -0.562 6.562 8 C -0.123 4.123 9 C 0.049 3.951 10 H 0.048 0.952 11 C -0.525 4.525 12 H 0.070 0.930 13 C 0.067 3.933 14 N -0.883 5.883 15 Si 0.892 3.108 16 H -0.281 1.281 17 H -0.286 1.286 18 H -0.273 1.273 19 C 0.143 3.857 20 H 0.069 0.931 21 C 0.065 3.935 22 H 0.067 0.933 23 H 0.060 0.940 24 H 0.022 0.978 25 H 0.034 0.966 26 H 0.076 0.924 27 H 0.081 0.919 28 H 0.068 0.932 29 H 0.092 0.908 30 H 0.087 0.913 31 H 0.263 0.737 32 H 0.088 0.912 33 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.098 3.758 7.068 10.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 N -0.285 5.285 3 C -0.082 4.082 4 C 0.011 3.989 5 N -0.365 5.365 6 C 0.308 3.692 7 O -0.442 6.442 8 C -0.163 4.163 9 C 0.030 3.970 10 H 0.066 0.934 11 C -0.563 4.563 12 H 0.088 0.912 13 C -0.136 4.136 14 N -0.520 5.520 15 Si 0.720 3.280 16 H -0.207 1.207 17 H -0.212 1.212 18 H -0.198 1.198 19 C 0.039 3.961 20 H 0.087 0.913 21 C -0.062 4.062 22 H 0.086 0.914 23 H 0.079 0.921 24 H 0.040 0.960 25 H 0.052 0.948 26 H 0.095 0.905 27 H 0.099 0.901 28 H 0.086 0.914 29 H 0.110 0.890 30 H 0.106 0.894 31 H 0.073 0.927 32 H 0.106 0.894 33 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -6.375 4.011 7.426 10.577 hybrid contribution -0.999 -0.002 -1.420 1.736 sum -7.373 4.009 6.006 10.320 Atomic orbital electron populations 1.22269 0.87666 1.02048 0.99745 1.61494 1.07170 1.12564 1.47229 1.22441 0.95413 0.89976 1.00357 1.21674 0.91813 0.93473 0.91976 1.48729 1.37422 1.15297 1.35037 1.21693 0.78834 0.84772 0.83913 1.90584 1.36042 1.38771 1.78786 1.22441 1.03428 0.95292 0.95166 1.19358 0.95369 0.92524 0.89772 0.93406 1.21148 0.93522 1.40210 1.01371 0.91214 1.24991 0.95236 0.95401 0.98017 1.69960 1.15158 1.44924 1.21931 0.86591 0.81635 0.78877 0.80914 1.20709 1.21151 1.19771 1.22033 0.92334 0.81387 1.00326 0.91324 1.22582 0.95452 0.97457 0.90691 0.91401 0.92092 0.95972 0.94817 0.90525 0.90054 0.91366 0.88956 0.89410 0.92675 0.89397 0.93075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 9.59 60.07 0.58 0.97 16 2 N -0.56 -8.61 4.77 -242.30 -1.16 -9.77 16 3 C 0.05 0.68 5.63 -3.51 -0.02 0.66 16 4 C 0.13 2.13 7.14 -3.10 -0.02 2.10 16 5 N -0.63 -12.41 2.96 -163.62 -0.49 -12.90 16 6 C 0.52 11.71 8.02 -11.12 -0.09 11.62 16 7 O -0.56 -14.06 17.94 5.56 0.10 -13.96 16 8 C -0.12 -2.87 5.49 -26.64 -0.15 -3.02 16 9 C 0.05 1.13 3.01 -90.79 -0.27 0.86 16 10 H 0.05 1.18 8.14 -51.93 -0.42 0.75 16 11 C -0.52 -12.76 7.59 -34.44 -0.26 -13.02 16 12 H 0.07 1.62 5.16 -52.49 -0.27 1.35 16 13 C 0.07 1.71 5.33 -17.82 -0.10 1.61 16 14 N -0.88 -23.72 12.48 55.43 0.69 -23.03 16 15 Si 0.89 19.83 29.54 -169.99 -5.02 14.81 16 16 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 17 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 18 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 19 C 0.14 2.81 3.71 -66.99 -0.25 2.56 16 20 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 21 C 0.07 1.18 3.54 -3.65 -0.01 1.16 16 22 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 23 H 0.06 0.65 8.03 -51.93 -0.42 0.23 16 24 H 0.02 0.28 8.14 -51.93 -0.42 -0.14 16 25 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.08 0.90 8.01 -51.93 -0.42 0.48 16 27 H 0.08 1.26 8.10 -51.93 -0.42 0.84 16 28 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 29 H 0.09 2.26 7.84 -51.93 -0.41 1.85 16 30 H 0.09 2.18 8.11 -51.93 -0.42 1.76 16 31 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 32 H 0.09 1.57 7.13 -51.93 -0.37 1.20 16 33 H 0.05 1.02 7.40 -51.93 -0.38 0.63 16 LS Contribution 265.00 15.07 3.99 3.99 Total: -1.00 -28.12 265.00 -7.25 -35.37 By element: Atomic # 1 Polarization: 4.76 SS G_CDS: -4.78 Total: -0.02 kcal Atomic # 6 Polarization: 6.09 SS G_CDS: -0.59 Total: 5.50 kcal Atomic # 7 Polarization: -44.75 SS G_CDS: -0.95 Total: -45.70 kcal Atomic # 8 Polarization: -14.06 SS G_CDS: 0.10 Total: -13.96 kcal Atomic # 14 Polarization: 19.83 SS G_CDS: -5.02 Total: 14.81 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -28.12 -7.25 -35.37 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259622757.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.513 kcal (2) G-P(sol) polarization free energy of solvation -28.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds