Wall clock time and date at job start Mon Mar 30 2020 02:43:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47303 * 2 1 4 4 C 1.53005 * 109.47146 * 119.99483 * 2 1 3 5 5 C 1.50696 * 109.47119 * 174.99906 * 4 2 1 6 6 N 1.27570 * 126.41765 * 359.95968 * 5 4 2 7 7 N 1.39144 * 113.16195 * 180.02562 * 6 5 4 8 8 C 1.46500 * 124.43833 * 179.97438 * 7 6 5 9 9 C 1.34952 * 111.12865 * 359.97438 * 7 6 5 10 10 O 1.21296 * 127.50698 * 179.97438 * 9 7 6 11 11 C 1.51446 * 126.41296 * 180.02562 * 5 4 2 12 12 H 1.08997 * 110.61102 * 298.47842 * 11 5 4 13 13 C 1.50698 * 110.60668 * 61.45469 * 11 5 4 14 14 H 1.08004 * 120.00191 * 359.97438 * 13 11 5 15 15 C 1.37876 * 119.99980 * 179.97438 * 13 11 5 16 16 N 1.31517 * 120.00169 * 359.97438 * 15 13 11 17 17 Si 1.86799 * 120.00136 * 179.97438 * 15 13 11 18 18 H 1.48502 * 109.47363 * 59.99846 * 17 15 13 19 19 H 1.48502 * 109.47281 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.47263 * 299.99790 * 17 15 13 21 21 H 1.08998 * 109.47379 * 300.00406 * 1 2 3 22 22 H 1.09006 * 109.47000 * 60.00002 * 1 2 3 23 23 H 1.08999 * 109.47393 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.47379 * 239.99594 * 2 1 3 25 25 H 1.08998 * 109.47235 * 59.99506 * 3 2 1 26 26 H 1.08996 * 109.47212 * 180.02562 * 3 2 1 27 27 H 1.09006 * 109.46613 * 299.99710 * 3 2 1 28 28 H 1.09005 * 109.46482 * 54.99959 * 4 2 1 29 29 H 1.09001 * 109.47184 * 295.00324 * 4 2 1 30 30 H 1.09008 * 109.47155 * 0.02641 * 8 7 6 31 31 H 1.09006 * 109.47456 * 120.02007 * 8 7 6 32 32 H 1.08998 * 109.47678 * 240.02692 * 8 7 6 33 33 H 0.96999 * 120.00094 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5418 -0.8293 1.1890 6 7 4.2953 -0.3972 0.2547 7 7 5.6455 -0.6461 0.4811 8 6 6.7239 -0.2571 -0.4309 9 6 5.8314 -1.2928 1.6509 10 8 6.8828 -1.6534 2.1364 11 6 4.4392 -1.4727 2.2255 12 1 4.3504 -0.9582 3.1823 13 6 4.1115 -2.9359 2.3760 14 1 3.3252 -3.3771 1.7814 15 6 4.8154 -3.7114 3.2727 16 7 5.7732 -3.1742 3.9964 17 14 4.4088 -5.5249 3.4597 18 1 4.6055 -6.2131 2.1586 19 1 5.3028 -6.1301 4.4794 20 1 2.9951 -5.6735 3.8895 21 1 -0.3634 0.5139 0.8899 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 1.8933 -0.5139 -0.8899 25 1 1.6766 1.9564 0.8899 26 1 3.1300 1.4425 -0.0005 27 1 1.6767 1.9563 -0.8901 28 1 1.6053 -1.7197 1.2952 29 1 1.7516 -0.1582 2.1370 30 1 6.3011 0.2498 -1.2984 31 1 7.4104 0.4152 0.0839 32 1 7.2628 -1.1467 -0.7569 33 1 6.2687 -3.7199 4.6270 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259626962.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:57 Heat of formation + Delta-G solvation = -13.885136 kcal Electronic energy + Delta-G solvation = -15809.884390 eV Core-core repulsion = 13256.910124 eV Total energy + Delta-G solvation = -2552.974265 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.77377 -38.34411 -36.81314 -35.24354 -33.50140 -30.39586 -29.23708 -27.80152 -26.97060 -25.45092 -21.86688 -21.38597 -19.70023 -18.63911 -17.60976 -16.73724 -16.60177 -15.92165 -15.51027 -15.13717 -14.79874 -14.49432 -14.29038 -13.88620 -13.50665 -13.36415 -13.20020 -12.88706 -12.78180 -12.58170 -12.36879 -12.30010 -11.93753 -11.71993 -11.50610 -11.40512 -11.16412 -10.65770 -10.10683 -9.27838 -8.19539 -6.38785 1.03965 1.41341 1.43355 1.51426 1.81467 2.06460 2.39216 3.07558 3.47220 3.68558 4.19617 4.23765 4.44743 4.48786 4.49118 4.67610 4.69417 4.87291 4.92339 4.95712 5.00920 5.07783 5.21045 5.28805 5.40839 5.46095 5.59758 5.63019 5.67053 5.86712 5.95374 6.63293 7.06290 7.29096 7.40454 8.85079 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.023525 B = 0.010619 C = 0.007865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.936954 B = 2636.117669 C = 3559.393479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.086 4.086 3 C -0.147 4.147 4 C -0.032 4.032 5 C 0.118 3.882 6 N -0.260 5.260 7 N -0.503 5.503 8 C 0.113 3.887 9 C 0.482 3.518 10 O -0.531 6.531 11 C -0.001 4.001 12 H 0.058 0.942 13 C -0.533 4.533 14 H 0.078 0.922 15 C 0.014 3.986 16 N -0.881 5.881 17 Si 0.968 3.032 18 H -0.276 1.276 19 H -0.288 1.288 20 H -0.250 1.250 21 H 0.063 0.937 22 H 0.064 0.936 23 H 0.059 0.941 24 H 0.062 0.938 25 H 0.056 0.944 26 H 0.046 0.954 27 H 0.062 0.938 28 H 0.098 0.902 29 H 0.101 0.899 30 H 0.108 0.892 31 H 0.063 0.937 32 H 0.055 0.945 33 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.736 6.281 -7.765 13.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.105 4.105 3 C -0.204 4.204 4 C -0.071 4.071 5 C -0.074 4.074 6 N -0.067 5.067 7 N -0.325 5.325 8 C -0.028 4.028 9 C 0.271 3.729 10 O -0.404 6.404 11 C -0.025 4.025 12 H 0.075 0.925 13 C -0.571 4.571 14 H 0.096 0.904 15 C -0.190 4.190 16 N -0.516 5.516 17 Si 0.791 3.209 18 H -0.201 1.201 19 H -0.213 1.213 20 H -0.174 1.174 21 H 0.082 0.918 22 H 0.083 0.917 23 H 0.078 0.922 24 H 0.080 0.920 25 H 0.075 0.925 26 H 0.065 0.935 27 H 0.081 0.919 28 H 0.117 0.883 29 H 0.119 0.881 30 H 0.126 0.874 31 H 0.082 0.918 32 H 0.074 0.926 33 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -8.736 6.572 -8.317 13.736 hybrid contribution 0.851 -1.333 1.074 1.912 sum -7.884 5.239 -7.243 11.919 Atomic orbital electron populations 1.21796 0.93105 1.02323 1.02564 1.20986 0.96702 0.96252 0.96532 1.21882 1.01208 0.95586 1.01751 1.20414 0.83016 1.03131 1.00568 1.25801 0.98118 0.91755 0.91727 1.74432 0.88472 1.19501 1.24284 1.50076 1.04501 1.56505 1.21432 1.21576 0.87353 1.00317 0.93564 1.22757 0.93192 0.75350 0.81614 1.90585 1.33021 1.50629 1.66137 1.19266 0.88859 0.98977 0.95374 0.92474 1.20700 1.20683 0.91568 1.24139 0.90386 1.26034 0.94230 1.03802 0.94959 1.70244 1.20592 1.37805 1.22916 0.85470 0.79153 0.78526 0.77717 1.20104 1.21335 1.17382 0.91770 0.91710 0.92233 0.91975 0.92532 0.93474 0.91937 0.88343 0.88050 0.87383 0.91835 0.92614 0.92932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.56 9.19 71.98 0.66 -1.89 16 2 C -0.09 -2.09 2.62 -10.79 -0.03 -2.12 16 3 C -0.15 -3.52 8.96 71.98 0.64 -2.88 16 4 C -0.03 -0.96 5.29 29.85 0.16 -0.80 16 5 C 0.12 4.79 6.22 46.83 0.29 5.08 16 6 N -0.26 -10.55 9.49 -40.84 -0.39 -10.94 16 7 N -0.50 -22.73 3.94 -483.10 -1.90 -24.64 16 8 C 0.11 3.94 11.23 127.77 1.43 5.37 16 9 C 0.48 26.46 7.56 87.94 0.66 27.13 16 10 O -0.53 -33.20 16.09 -3.08 -0.05 -33.25 16 11 C 0.00 -0.06 2.88 -12.48 -0.04 -0.10 16 12 H 0.06 3.20 8.14 -2.39 -0.02 3.18 16 13 C -0.53 -28.93 8.56 25.60 0.22 -28.71 16 14 H 0.08 3.97 7.77 -2.91 -0.02 3.94 16 15 C 0.01 0.79 5.33 84.65 0.45 1.24 16 16 N -0.88 -54.02 11.43 21.45 0.25 -53.78 16 17 Si 0.97 43.61 29.54 68.60 2.03 45.63 16 18 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 19 H -0.29 -12.97 7.11 99.48 0.71 -12.26 16 20 H -0.25 -10.27 7.11 99.48 0.71 -9.57 16 21 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 22 H 0.06 1.03 8.14 -2.38 -0.02 1.01 16 23 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 24 H 0.06 1.67 8.09 -2.39 -0.02 1.65 16 25 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 26 H 0.05 1.37 6.01 -2.39 -0.01 1.36 16 27 H 0.06 1.28 8.14 -2.38 -0.02 1.26 16 28 H 0.10 2.85 8.14 -2.38 -0.02 2.83 16 29 H 0.10 2.69 8.14 -2.39 -0.02 2.67 16 30 H 0.11 2.99 8.14 -2.38 -0.02 2.97 16 31 H 0.06 2.10 8.14 -2.38 -0.02 2.08 16 32 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 33 H 0.26 15.40 8.31 -92.71 -0.77 14.63 16 Total: -1.00 -70.80 279.39 5.47 -65.33 By element: Atomic # 1 Polarization: 8.25 SS G_CDS: 1.08 Total: 9.33 kcal Atomic # 6 Polarization: -2.15 SS G_CDS: 4.46 Total: 2.31 kcal Atomic # 7 Polarization: -87.31 SS G_CDS: -2.05 Total: -89.36 kcal Atomic # 8 Polarization: -33.20 SS G_CDS: -0.05 Total: -33.25 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.63 kcal Total: -70.80 5.47 -65.33 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259626962.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.444 kcal (2) G-P(sol) polarization free energy of solvation -70.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds