Wall clock time and date at job start Mon Mar 30 2020 02:43:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47239 * 2 1 4 4 C 1.53007 * 109.46709 * 119.99961 * 2 1 3 5 5 C 1.50697 * 109.47180 * 65.00090 * 4 2 1 6 6 N 1.27566 * 126.41867 * 359.95275 * 5 4 2 7 7 N 1.39152 * 113.16747 * 179.79201 * 6 5 4 8 8 C 1.46497 * 124.43934 * 180.28277 * 7 6 5 9 9 C 1.34953 * 111.11856 * 0.43647 * 7 6 5 10 10 O 1.21303 * 127.50168 * 179.86969 * 9 7 6 11 11 C 1.51443 * 126.41726 * 180.02562 * 5 4 2 12 12 H 1.09006 * 110.60984 * 61.44098 * 11 5 4 13 13 C 1.50705 * 110.73470 * 298.54179 * 11 5 4 14 14 H 1.07997 * 120.00199 * 4.34081 * 13 11 5 15 15 C 1.37876 * 119.99582 * 184.34210 * 13 11 5 16 16 N 1.31512 * 120.00142 * 359.97438 * 15 13 11 17 17 Si 1.86808 * 119.99776 * 179.97438 * 15 13 11 18 18 H 1.48495 * 109.46957 * 60.00363 * 17 15 13 19 19 H 1.48507 * 109.46810 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.47052 * 299.99683 * 17 15 13 21 21 H 1.08999 * 109.47894 * 300.00372 * 1 2 3 22 22 H 1.09005 * 109.46944 * 60.00396 * 1 2 3 23 23 H 1.08995 * 109.47624 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47155 * 239.99667 * 2 1 3 25 25 H 1.09001 * 109.47109 * 179.97438 * 3 2 1 26 26 H 1.08998 * 109.47220 * 299.99716 * 3 2 1 27 27 H 1.08997 * 109.47319 * 59.99767 * 3 2 1 28 28 H 1.09009 * 109.46912 * 304.99770 * 4 2 1 29 29 H 1.09000 * 109.46979 * 185.00426 * 4 2 1 30 30 H 1.09000 * 109.46863 * 270.17275 * 8 7 6 31 31 H 1.08998 * 109.47385 * 30.17274 * 8 7 6 32 32 H 1.08997 * 109.47237 * 150.18021 * 8 7 6 33 33 H 0.97005 * 119.99744 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 1.6412 -2.1733 1.1890 6 7 0.9812 -2.7393 0.2555 7 7 0.7697 -4.0962 0.4796 8 6 0.0475 -4.9843 -0.4347 9 6 1.3140 -4.4862 1.6513 10 8 1.3033 -5.5977 2.1370 11 6 1.9476 -3.2336 2.2259 12 1 1.4925 -2.9775 3.1827 13 6 3.4358 -3.4150 2.3799 14 1 4.1167 -2.7746 1.8389 15 6 3.9279 -4.3984 3.2116 16 7 3.0988 -5.1779 3.8707 17 14 5.7726 -4.6237 3.4020 18 1 6.3719 -3.3727 3.9320 19 1 6.0402 -5.7387 4.3457 20 1 6.3718 -4.9386 2.0802 21 1 -0.3635 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3634 -1.0276 -0.0005 24 1 1.8933 -0.5139 -0.8899 25 1 3.1300 1.4425 0.0005 26 1 1.6767 1.9563 -0.8900 27 1 1.6767 1.9564 0.8899 28 1 1.6052 -0.2617 2.1371 29 1 3.1262 -0.6443 1.2953 30 1 -1.0121 -4.9849 -0.1792 31 1 0.1742 -4.6326 -1.4586 32 1 0.4430 -5.9961 -0.3465 33 1 3.4451 -5.8695 4.4561 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259626963.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:59 Heat of formation + Delta-G solvation = 9.497992 kcal Electronic energy + Delta-G solvation = -15824.836653 eV Core-core repulsion = 13272.876356 eV Total energy + Delta-G solvation = -2551.960297 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.91917 -36.62917 -35.24687 -33.26705 -31.73139 -28.42765 -27.88556 -26.79406 -25.23131 -23.56682 -20.17475 -19.98685 -18.00608 -16.56621 -15.78089 -15.02832 -14.70988 -14.43273 -13.97279 -13.53319 -13.23540 -12.89053 -12.67282 -12.30759 -12.03787 -11.87835 -11.65432 -11.59175 -11.08075 -10.97653 -10.82735 -10.69114 -10.37368 -10.33338 -10.27267 -9.76685 -9.23139 -8.55146 -8.13068 -7.45364 -6.05663 -4.19582 2.82628 3.28158 3.33811 3.35215 3.53532 4.07694 4.37679 4.93308 5.10832 5.25991 5.27347 5.47682 5.72114 5.83823 5.92767 5.94175 5.98601 6.07375 6.11534 6.12891 6.23552 6.34499 6.39509 6.61629 6.70924 6.73217 6.99266 7.27835 7.53592 7.75476 8.00766 8.72986 8.89328 9.42606 9.46241 10.96725 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.023850 B = 0.010594 C = 0.007872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.715994 B = 2642.263896 C = 3555.898849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.092 4.092 3 C -0.146 4.146 4 C -0.032 4.032 5 C 0.105 3.895 6 N -0.268 5.268 7 N -0.502 5.502 8 C 0.119 3.881 9 C 0.498 3.502 10 O -0.478 6.478 11 C 0.014 3.986 12 H 0.077 0.923 13 C -0.526 4.526 14 H 0.068 0.932 15 C 0.068 3.932 16 N -0.835 5.835 17 Si 0.899 3.101 18 H -0.273 1.273 19 H -0.285 1.285 20 H -0.276 1.276 21 H 0.046 0.954 22 H 0.044 0.956 23 H 0.072 0.928 24 H 0.073 0.927 25 H 0.054 0.946 26 H 0.050 0.950 27 H 0.053 0.947 28 H 0.084 0.916 29 H 0.092 0.908 30 H 0.046 0.954 31 H 0.066 0.934 32 H 0.070 0.930 33 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.252 9.133 -6.283 11.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.111 4.111 3 C -0.204 4.204 4 C -0.071 4.071 5 C -0.088 4.088 6 N -0.075 5.075 7 N -0.326 5.326 8 C -0.024 4.024 9 C 0.286 3.714 10 O -0.346 6.346 11 C -0.009 4.009 12 H 0.095 0.905 13 C -0.565 4.565 14 H 0.087 0.913 15 C -0.141 4.141 16 N -0.468 5.468 17 Si 0.726 3.274 18 H -0.198 1.198 19 H -0.211 1.211 20 H -0.202 1.202 21 H 0.065 0.935 22 H 0.063 0.937 23 H 0.091 0.909 24 H 0.092 0.908 25 H 0.073 0.927 26 H 0.069 0.931 27 H 0.072 0.928 28 H 0.102 0.898 29 H 0.110 0.890 30 H 0.064 0.936 31 H 0.085 0.915 32 H 0.089 0.911 33 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -3.847 8.218 -6.793 11.335 hybrid contribution 1.251 -0.615 0.702 1.561 sum -2.595 7.602 -6.092 10.082 Atomic orbital electron populations 1.21911 0.95288 1.03048 1.00365 1.21034 0.96195 0.95254 0.98599 1.21850 1.00912 0.96268 1.01335 1.20156 1.01955 0.86608 0.98346 1.25285 0.92749 0.96790 0.93977 1.74279 1.16717 0.91926 1.24580 1.49966 1.55410 1.05362 1.21871 1.21266 0.95141 0.92916 0.93064 1.22547 0.76356 0.92202 0.80260 1.90651 1.56551 1.23045 1.64337 1.19240 0.99184 0.87786 0.94735 0.90535 1.20340 0.87291 1.19686 1.29158 0.91336 1.25126 0.98361 0.95301 0.95294 1.70118 1.34063 1.17483 1.25094 0.86548 0.84853 0.77904 0.78114 1.19793 1.21092 1.20194 0.93493 0.93655 0.90912 0.90805 0.92720 0.93093 0.92797 0.89779 0.88977 0.93564 0.91539 0.91147 0.92514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.99 8.96 37.16 0.33 -1.66 16 2 C -0.09 -1.26 2.62 -90.62 -0.24 -1.50 16 3 C -0.15 -1.60 9.19 37.16 0.34 -1.26 16 4 C -0.03 -0.50 5.29 -27.88 -0.15 -0.65 16 5 C 0.10 2.16 6.23 -78.73 -0.49 1.67 16 6 N -0.27 -5.60 9.49 35.53 0.34 -5.26 16 7 N -0.50 -11.43 3.94 -66.67 -0.26 -11.70 16 8 C 0.12 2.15 11.27 59.85 0.67 2.82 16 9 C 0.50 13.36 7.52 -10.43 -0.08 13.28 16 10 O -0.48 -14.37 15.57 5.54 0.09 -14.29 16 11 C 0.01 0.35 2.96 -93.23 -0.28 0.08 16 12 H 0.08 2.04 8.14 -51.93 -0.42 1.62 16 13 C -0.53 -14.24 8.61 -34.44 -0.30 -14.54 16 14 H 0.07 1.77 7.77 -52.49 -0.41 1.36 16 15 C 0.07 1.90 5.31 -17.82 -0.09 1.80 16 16 N -0.84 -24.89 10.97 55.43 0.61 -24.29 16 17 Si 0.90 21.24 29.54 -169.99 -5.02 16.22 16 18 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 19 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 20 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 21 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 22 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 23 H 0.07 1.14 6.01 -51.93 -0.31 0.83 16 24 H 0.07 1.09 8.09 -51.93 -0.42 0.67 16 25 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 27 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.08 1.21 8.14 -51.92 -0.42 0.79 16 29 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 30 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.07 1.28 8.04 -51.93 -0.42 0.87 16 33 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 278.43 15.07 4.20 4.20 Total: -1.00 -32.09 278.43 -5.25 -37.34 By element: Atomic # 1 Polarization: 2.65 SS G_CDS: -4.92 Total: -2.27 kcal Atomic # 6 Polarization: 0.32 SS G_CDS: -0.27 Total: 0.05 kcal Atomic # 7 Polarization: -41.92 SS G_CDS: 0.68 Total: -41.24 kcal Atomic # 8 Polarization: -14.37 SS G_CDS: 0.09 Total: -14.29 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -32.09 -5.25 -37.34 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259626963.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.833 kcal (2) G-P(sol) polarization free energy of solvation -32.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.335 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds