Wall clock time and date at job start Mon Mar 30 2020 02:43:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47239 * 2 1 4 4 C 1.53007 * 109.46709 * 119.99961 * 2 1 3 5 5 C 1.50697 * 109.47180 * 65.00090 * 4 2 1 6 6 N 1.27566 * 126.41867 * 359.95275 * 5 4 2 7 7 N 1.39152 * 113.16747 * 179.79201 * 6 5 4 8 8 C 1.46497 * 124.43934 * 180.28277 * 7 6 5 9 9 C 1.34953 * 111.11856 * 0.43647 * 7 6 5 10 10 O 1.21303 * 127.50168 * 179.86969 * 9 7 6 11 11 C 1.51443 * 126.41726 * 180.02562 * 5 4 2 12 12 H 1.09006 * 110.60984 * 61.44098 * 11 5 4 13 13 C 1.50705 * 110.73470 * 298.54179 * 11 5 4 14 14 H 1.07997 * 120.00199 * 4.34081 * 13 11 5 15 15 C 1.37876 * 119.99582 * 184.34210 * 13 11 5 16 16 N 1.31512 * 120.00142 * 359.97438 * 15 13 11 17 17 Si 1.86808 * 119.99776 * 179.97438 * 15 13 11 18 18 H 1.48495 * 109.46957 * 60.00363 * 17 15 13 19 19 H 1.48507 * 109.46810 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.47052 * 299.99683 * 17 15 13 21 21 H 1.08999 * 109.47894 * 300.00372 * 1 2 3 22 22 H 1.09005 * 109.46944 * 60.00396 * 1 2 3 23 23 H 1.08995 * 109.47624 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47155 * 239.99667 * 2 1 3 25 25 H 1.09001 * 109.47109 * 179.97438 * 3 2 1 26 26 H 1.08998 * 109.47220 * 299.99716 * 3 2 1 27 27 H 1.08997 * 109.47319 * 59.99767 * 3 2 1 28 28 H 1.09009 * 109.46912 * 304.99770 * 4 2 1 29 29 H 1.09000 * 109.46979 * 185.00426 * 4 2 1 30 30 H 1.09000 * 109.46863 * 270.17275 * 8 7 6 31 31 H 1.08998 * 109.47385 * 30.17274 * 8 7 6 32 32 H 1.08997 * 109.47237 * 150.18021 * 8 7 6 33 33 H 0.97005 * 119.99744 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 1.6412 -2.1733 1.1890 6 7 0.9812 -2.7393 0.2555 7 7 0.7697 -4.0962 0.4796 8 6 0.0475 -4.9843 -0.4347 9 6 1.3140 -4.4862 1.6513 10 8 1.3033 -5.5977 2.1370 11 6 1.9476 -3.2336 2.2259 12 1 1.4925 -2.9775 3.1827 13 6 3.4358 -3.4150 2.3799 14 1 4.1167 -2.7746 1.8389 15 6 3.9279 -4.3984 3.2116 16 7 3.0988 -5.1779 3.8707 17 14 5.7726 -4.6237 3.4020 18 1 6.3719 -3.3727 3.9320 19 1 6.0402 -5.7387 4.3457 20 1 6.3718 -4.9386 2.0802 21 1 -0.3635 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3634 -1.0276 -0.0005 24 1 1.8933 -0.5139 -0.8899 25 1 3.1300 1.4425 0.0005 26 1 1.6767 1.9563 -0.8900 27 1 1.6767 1.9564 0.8899 28 1 1.6052 -0.2617 2.1371 29 1 3.1262 -0.6443 1.2953 30 1 -1.0121 -4.9849 -0.1792 31 1 0.1742 -4.6326 -1.4586 32 1 0.4430 -5.9961 -0.3465 33 1 3.4451 -5.8695 4.4561 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259626963.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:59 Heat of formation + Delta-G solvation = -11.194176 kcal Electronic energy + Delta-G solvation = -15825.733933 eV Core-core repulsion = 13272.876356 eV Total energy + Delta-G solvation = -2552.857577 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.75748 -38.31869 -36.79810 -35.23521 -33.48140 -30.38772 -29.23551 -27.80151 -26.95013 -25.44205 -21.85832 -21.38356 -19.69087 -18.60225 -17.59242 -16.73643 -16.56802 -15.91204 -15.50419 -15.14009 -14.79270 -14.48411 -14.28210 -13.88070 -13.49106 -13.34903 -13.19828 -12.88380 -12.77444 -12.57541 -12.34789 -12.28385 -11.95447 -11.72759 -11.50489 -11.40236 -11.13149 -10.64202 -10.08539 -9.25497 -8.16514 -6.37205 1.05612 1.41467 1.43470 1.51424 1.83106 2.09516 2.39469 3.08684 3.47671 3.68123 4.19417 4.23618 4.44828 4.47334 4.52636 4.69073 4.69687 4.87310 4.92299 4.95808 5.00989 5.07822 5.21016 5.28858 5.41471 5.47343 5.59945 5.63737 5.67056 5.87958 5.96474 6.63506 7.07834 7.29769 7.44605 8.85732 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.023850 B = 0.010594 C = 0.007872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.715994 B = 2642.263896 C = 3555.898849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.086 4.086 3 C -0.141 4.141 4 C -0.032 4.032 5 C 0.118 3.882 6 N -0.260 5.260 7 N -0.505 5.505 8 C 0.112 3.888 9 C 0.482 3.518 10 O -0.524 6.524 11 C -0.002 4.002 12 H 0.055 0.945 13 C -0.534 4.534 14 H 0.079 0.921 15 C 0.012 3.988 16 N -0.876 5.876 17 Si 0.967 3.033 18 H -0.251 1.251 19 H -0.289 1.289 20 H -0.275 1.275 21 H 0.056 0.944 22 H 0.061 0.939 23 H 0.046 0.954 24 H 0.061 0.939 25 H 0.059 0.941 26 H 0.064 0.936 27 H 0.063 0.937 28 H 0.102 0.898 29 H 0.098 0.902 30 H 0.066 0.934 31 H 0.096 0.904 32 H 0.063 0.937 33 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.572 11.267 -7.538 13.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.105 4.105 3 C -0.198 4.198 4 C -0.071 4.071 5 C -0.075 4.075 6 N -0.067 5.067 7 N -0.327 5.327 8 C -0.029 4.029 9 C 0.271 3.729 10 O -0.396 6.396 11 C -0.025 4.025 12 H 0.073 0.927 13 C -0.573 4.573 14 H 0.097 0.903 15 C -0.193 4.193 16 N -0.510 5.510 17 Si 0.791 3.209 18 H -0.175 1.175 19 H -0.214 1.214 20 H -0.200 1.200 21 H 0.075 0.925 22 H 0.080 0.920 23 H 0.065 0.935 24 H 0.080 0.920 25 H 0.078 0.922 26 H 0.083 0.917 27 H 0.082 0.918 28 H 0.120 0.880 29 H 0.117 0.883 30 H 0.085 0.915 31 H 0.114 0.886 32 H 0.082 0.918 33 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -3.182 10.403 -8.097 13.561 hybrid contribution 0.964 -1.233 1.057 1.889 sum -2.218 9.170 -7.040 11.772 Atomic orbital electron populations 1.21879 0.95093 1.01707 1.01744 1.20984 0.96286 0.96656 0.96543 1.21796 1.01241 0.94174 1.02565 1.20414 1.02492 0.83655 1.00566 1.25792 0.91787 0.98070 0.91821 1.74407 1.17191 0.90742 1.24363 1.50085 1.54771 1.06495 1.21354 1.21557 0.95690 0.91908 0.93710 1.22715 0.76680 0.91921 0.81618 1.90603 1.58530 1.24575 1.65920 1.19267 0.98655 0.89332 0.95265 0.92748 1.20712 0.88288 1.19522 1.28744 0.90259 1.26054 1.03157 0.95035 0.95008 1.70307 1.36207 1.18298 1.26204 0.85481 0.79060 0.78471 0.77920 1.17487 1.21425 1.20003 0.92513 0.91961 0.93510 0.92009 0.92221 0.91726 0.91752 0.88033 0.88342 0.91521 0.88560 0.91790 0.93054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.55 8.96 71.98 0.64 -2.90 16 2 C -0.09 -2.10 2.62 -10.79 -0.03 -2.13 16 3 C -0.14 -2.56 9.19 71.98 0.66 -1.90 16 4 C -0.03 -0.96 5.29 29.85 0.16 -0.80 16 5 C 0.12 4.77 6.23 46.83 0.29 5.07 16 6 N -0.26 -10.63 9.49 -40.85 -0.39 -11.02 16 7 N -0.50 -22.91 3.94 -483.13 -1.90 -24.82 16 8 C 0.11 3.95 11.27 127.77 1.44 5.39 16 9 C 0.48 26.49 7.52 87.94 0.66 27.15 16 10 O -0.52 -32.76 15.57 -3.10 -0.05 -32.81 16 11 C 0.00 -0.08 2.96 -12.48 -0.04 -0.12 16 12 H 0.06 3.03 8.14 -2.38 -0.02 3.01 16 13 C -0.53 -29.01 8.61 25.60 0.22 -28.79 16 14 H 0.08 4.01 7.77 -2.91 -0.02 3.99 16 15 C 0.01 0.68 5.31 84.65 0.45 1.13 16 16 N -0.88 -53.86 10.97 21.45 0.24 -53.63 16 17 Si 0.97 43.63 29.54 68.60 2.03 45.66 16 18 H -0.25 -10.36 7.11 99.48 0.71 -9.65 16 19 H -0.29 -13.05 7.11 99.48 0.71 -12.35 16 20 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 21 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 22 H 0.06 1.28 8.14 -2.38 -0.02 1.27 16 23 H 0.05 1.38 6.01 -2.39 -0.01 1.36 16 24 H 0.06 1.67 8.09 -2.39 -0.02 1.65 16 25 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 26 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 27 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 28 H 0.10 2.69 8.14 -2.38 -0.02 2.67 16 29 H 0.10 2.84 8.14 -2.39 -0.02 2.83 16 30 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 31 H 0.10 2.79 8.14 -2.39 -0.02 2.77 16 32 H 0.06 2.33 8.04 -2.39 -0.02 2.31 16 33 H 0.26 15.40 8.31 -92.70 -0.77 14.63 16 Total: -1.00 -70.67 278.43 5.46 -65.20 By element: Atomic # 1 Polarization: 8.23 SS G_CDS: 1.08 Total: 9.31 kcal Atomic # 6 Polarization: -2.37 SS G_CDS: 4.46 Total: 2.09 kcal Atomic # 7 Polarization: -87.40 SS G_CDS: -2.06 Total: -89.46 kcal Atomic # 8 Polarization: -32.76 SS G_CDS: -0.05 Total: -32.81 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.66 kcal Total: -70.67 5.46 -65.20 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259626963.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.010 kcal (2) G-P(sol) polarization free energy of solvation -70.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds