Wall clock time and date at job start Mon Mar 30 2020 02:36:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.30255 * 125.62409 * 2 1 4 4 C 1.34478 * 108.70328 * 179.84258 * 3 2 1 5 5 C 1.50695 * 126.16414 * 180.16882 * 4 3 2 6 6 C 1.34323 * 107.66996 * 0.42143 * 4 3 2 7 7 C 1.50697 * 126.44527 * 179.72987 * 6 4 3 8 8 H 1.08998 * 109.47309 * 4.48869 * 7 6 4 9 9 C 1.50707 * 109.47197 * 244.49305 * 7 6 4 10 10 H 1.08005 * 119.99647 * 0.02562 * 9 7 6 11 11 C 1.37870 * 120.00181 * 179.97438 * 9 7 6 12 12 N 1.31507 * 120.00467 * 0.02562 * 11 9 7 13 13 Si 1.86804 * 119.99949 * 179.97438 * 11 9 7 14 14 H 1.48506 * 109.46889 * 89.99852 * 13 11 9 15 15 H 1.48496 * 109.47465 * 210.00172 * 13 11 9 16 16 H 1.48497 * 109.47110 * 330.00498 * 13 11 9 17 17 N 1.46894 * 109.47564 * 124.49524 * 7 6 4 18 18 C 1.46902 * 111.00109 * 298.27329 * 17 7 6 19 19 C 1.46900 * 111.00422 * 62.22555 * 17 7 6 20 20 O 1.33970 * 125.61726 * 180.31137 * 2 1 3 21 21 H 1.09004 * 109.47216 * 269.69427 * 1 2 3 22 22 H 1.09001 * 109.47113 * 29.68666 * 1 2 3 23 23 H 1.08997 * 109.47761 * 149.69608 * 1 2 3 24 24 H 1.09003 * 109.47261 * 270.29754 * 5 4 3 25 25 H 1.09000 * 109.47490 * 30.29954 * 5 4 3 26 26 H 1.09006 * 109.47342 * 150.29818 * 5 4 3 27 27 H 0.96999 * 120.00901 * 180.02562 * 12 11 9 28 28 H 1.09003 * 109.46803 * 59.99783 * 18 17 7 29 29 H 1.08994 * 109.47473 * 180.02562 * 18 17 7 30 30 H 1.09007 * 109.46786 * 300.00214 * 18 17 7 31 31 H 1.09001 * 109.47136 * 53.08312 * 19 17 7 32 32 H 1.09001 * 109.47516 * 173.08871 * 19 17 7 33 33 H 1.09002 * 109.46857 * 293.09284 * 19 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2656 1.0588 0.0000 4 6 3.5522 0.6674 0.0035 5 6 4.7570 1.5725 0.0083 6 6 3.5698 -0.6757 -0.0037 7 6 4.7936 -1.5550 -0.0089 8 1 5.6865 -0.9354 0.0746 9 6 4.8442 -2.3381 -1.2955 10 1 4.0679 -2.2114 -2.0356 11 6 5.8819 -3.2155 -1.5282 12 7 6.8275 -3.3694 -0.6273 13 14 5.9442 -4.1867 -3.1227 14 1 6.6969 -3.4143 -4.1436 15 1 6.6229 -5.4858 -2.8849 16 1 4.5620 -4.4317 -3.6073 17 7 4.7341 -2.4838 1.1276 18 6 4.7250 -1.7552 2.4031 19 6 3.5694 -3.3726 1.0207 20 8 2.2871 -1.0891 -0.0059 21 1 -0.3634 -0.0055 1.0277 22 1 -0.3633 0.8928 -0.5090 23 1 -0.3634 -0.8872 -0.5185 24 1 5.0475 1.7963 -1.0182 25 1 4.5130 2.4995 0.5272 26 1 5.5822 1.0764 0.5195 27 1 7.5578 -3.9864 -0.7911 28 1 3.8545 -1.1002 2.4411 29 1 4.6810 -2.4666 3.2277 30 1 5.6330 -1.1580 2.4869 31 1 3.5727 -3.8602 0.0459 32 1 3.6157 -4.1282 1.8051 33 1 2.6556 -2.7889 1.1319 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259737602.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:52 Heat of formation + Delta-G solvation = 2.306768 kcal Electronic energy + Delta-G solvation = -16215.319185 eV Core-core repulsion = 13663.047053 eV Total energy + Delta-G solvation = -2552.272132 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -44.18669 -38.42405 -36.00887 -34.40783 -33.56110 -30.48891 -29.84984 -28.31255 -26.85178 -25.16872 -22.63042 -22.47700 -21.11583 -18.67357 -17.56096 -17.41859 -16.50578 -16.04834 -15.71804 -15.28356 -14.93560 -14.31633 -14.20780 -13.87127 -13.77281 -13.65672 -13.40808 -13.08396 -12.95394 -12.84510 -12.62865 -12.38005 -12.20236 -12.06502 -11.74972 -11.44945 -11.27158 -10.57027 -9.34227 -8.82239 -8.06041 -6.26222 0.67107 1.41876 1.44127 1.52680 1.74239 1.97365 2.43738 3.13393 3.22135 3.67759 4.02889 4.09988 4.44599 4.51269 4.55449 4.56826 4.63291 4.71050 4.74230 4.78131 4.89175 4.92825 5.00618 5.02159 5.18267 5.34396 5.42915 5.60590 5.68367 5.96629 6.43470 6.68715 6.82820 6.95733 7.43148 8.97298 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.027163 B = 0.010216 C = 0.009781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.551642 B = 2740.044524 C = 2862.114926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 C 0.148 3.852 3 N -0.503 5.503 4 C -0.060 4.060 5 C -0.058 4.058 6 C -0.040 4.040 7 C 0.299 3.701 8 H 0.057 0.943 9 C -0.547 4.547 10 H 0.039 0.961 11 C 0.048 3.952 12 N -0.869 5.869 13 Si 0.946 3.054 14 H -0.274 1.274 15 H -0.279 1.279 16 H -0.276 1.276 17 N -0.520 5.520 18 C 0.033 3.967 19 C 0.049 3.951 20 O -0.207 6.207 21 H 0.107 0.893 22 H 0.110 0.890 23 H 0.098 0.902 24 H 0.073 0.927 25 H 0.082 0.918 26 H 0.071 0.929 27 H 0.262 0.738 28 H 0.000 1.000 29 H 0.071 0.929 30 H 0.059 0.941 31 H 0.052 0.948 32 H 0.058 0.942 33 H 0.015 0.985 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.957 4.197 2.851 9.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.059 4.059 3 N -0.235 5.235 4 C -0.179 4.179 5 C -0.115 4.115 6 C -0.095 4.095 7 C 0.191 3.809 8 H 0.074 0.926 9 C -0.585 4.585 10 H 0.057 0.943 11 C -0.157 4.157 12 N -0.504 5.504 13 Si 0.771 3.229 14 H -0.199 1.199 15 H -0.204 1.204 16 H -0.201 1.201 17 N -0.241 5.241 18 C -0.115 4.115 19 C -0.099 4.099 20 O -0.094 6.094 21 H 0.125 0.875 22 H 0.129 0.871 23 H 0.117 0.883 24 H 0.091 0.909 25 H 0.101 0.899 26 H 0.090 0.910 27 H 0.071 0.929 28 H 0.018 0.982 29 H 0.089 0.911 30 H 0.078 0.922 31 H 0.071 0.929 32 H 0.077 0.923 33 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges -7.582 4.360 2.915 9.219 hybrid contribution -0.208 -0.711 -0.823 1.107 sum -7.790 3.649 2.092 8.853 Atomic orbital electron populations 1.20403 0.78200 1.05972 1.05750 1.27361 0.98327 0.78923 1.01295 1.70192 1.01863 1.31244 1.20176 1.21893 0.94016 0.92782 1.09227 1.20036 0.91185 0.97350 1.02910 1.25430 0.84380 0.96303 1.03383 1.18081 0.84482 0.87693 0.90638 0.92566 1.20844 1.09567 1.26630 1.01460 0.94313 1.25492 0.94705 0.96811 0.98710 1.70150 1.11029 1.35012 1.34180 0.85776 0.78070 0.78499 0.80544 1.19949 1.20408 1.20080 1.62328 1.40268 1.20259 1.01268 1.22296 0.98977 0.97338 0.92911 1.22098 0.90172 0.96234 1.01391 1.84542 1.17180 1.37794 1.69880 0.87487 0.87106 0.88328 0.90853 0.89875 0.91015 0.92866 0.98165 0.91075 0.92175 0.92868 0.92313 0.96649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -1.04 10.51 71.23 0.75 -0.29 16 2 C 0.15 5.46 8.34 88.34 0.74 6.19 16 3 N -0.50 -20.33 11.29 -291.99 -3.30 -23.63 16 4 C -0.06 -2.55 7.11 41.26 0.29 -2.26 16 5 C -0.06 -2.04 10.10 71.23 0.72 -1.32 16 6 C -0.04 -1.84 4.36 24.79 0.11 -1.73 16 7 C 0.30 15.03 2.11 43.43 0.09 15.12 16 8 H 0.06 3.01 6.79 -2.39 -0.02 3.00 16 9 C -0.55 -29.95 6.99 25.60 0.18 -29.78 16 10 H 0.04 2.20 7.74 -2.91 -0.02 2.18 16 11 C 0.05 2.60 5.39 84.65 0.46 3.06 16 12 N -0.87 -48.39 12.77 21.44 0.27 -48.12 16 13 Si 0.95 42.78 29.54 68.60 2.03 44.81 16 14 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 15 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 16 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 17 N -0.52 -24.76 4.34 -932.20 -4.05 -28.81 16 18 C 0.03 1.34 9.33 127.69 1.19 2.53 16 19 C 0.05 2.20 8.84 127.69 1.13 3.33 16 20 O -0.21 -9.06 8.34 -3.84 -0.03 -9.09 16 21 H 0.11 1.94 8.14 -2.38 -0.02 1.92 16 22 H 0.11 2.10 8.14 -2.39 -0.02 2.08 16 23 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 24 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 25 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 26 H 0.07 2.51 7.10 -2.38 -0.02 2.50 16 27 H 0.26 13.87 8.31 -92.71 -0.77 13.10 16 28 H 0.00 0.00 7.14 -2.39 -0.02 -0.02 16 29 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 30 H 0.06 2.35 8.14 -2.38 -0.02 2.33 16 31 H 0.05 2.61 6.78 -2.39 -0.02 2.59 16 32 H 0.06 2.32 8.14 -2.39 -0.02 2.31 16 33 H 0.02 0.66 5.81 -2.39 -0.01 0.65 16 Total: -1.00 -64.31 275.47 1.67 -62.65 By element: Atomic # 1 Polarization: 6.25 SS G_CDS: 1.09 Total: 7.34 kcal Atomic # 6 Polarization: -10.81 SS G_CDS: 5.65 Total: -5.15 kcal Atomic # 7 Polarization: -93.48 SS G_CDS: -7.07 Total: -100.56 kcal Atomic # 8 Polarization: -9.06 SS G_CDS: -0.03 Total: -9.09 kcal Atomic # 14 Polarization: 42.78 SS G_CDS: 2.03 Total: 44.81 kcal Total: -64.31 1.67 -62.65 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259737602.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.952 kcal (2) G-P(sol) polarization free energy of solvation -64.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.645 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds