Wall clock time and date at job start Mon Mar 30 2020 02:35:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.34749 * 126.44635 * 2 1 4 4 C 1.33965 * 107.75766 * 179.97438 * 3 2 1 5 5 N 1.30261 * 108.75892 * 359.73287 * 4 3 2 6 6 C 1.34331 * 126.44069 * 179.97438 * 2 1 3 7 7 C 1.50704 * 126.16681 * 0.02562 * 6 2 1 8 8 H 1.09000 * 109.47081 * 344.99409 * 7 6 2 9 9 C 1.52992 * 109.47325 * 105.00034 * 7 6 2 10 10 N 1.46898 * 109.46738 * 225.00047 * 7 6 2 11 11 C 1.46901 * 111.00443 * 56.04446 * 10 7 6 12 12 C 1.46906 * 110.99820 * 179.97438 * 10 7 6 13 13 C 1.50696 * 109.47351 * 169.99890 * 12 10 7 14 14 H 1.08007 * 119.99780 * 0.02562 * 13 12 10 15 15 C 1.37878 * 120.00506 * 180.02562 * 13 12 10 16 16 N 1.31515 * 119.99253 * 359.97438 * 15 13 12 17 17 Si 1.86795 * 120.00341 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.47212 * 89.99910 * 17 15 13 19 19 H 1.48494 * 109.47103 * 209.99646 * 17 15 13 20 20 H 1.48502 * 109.46911 * 329.99720 * 17 15 13 21 21 H 1.08996 * 109.46947 * 270.02088 * 1 2 3 22 22 H 1.09001 * 109.46903 * 30.01429 * 1 2 3 23 23 H 1.08993 * 109.47352 * 150.02030 * 1 2 3 24 24 H 1.08002 * 125.62266 * 180.02562 * 4 3 2 25 25 H 1.09007 * 109.46908 * 299.99721 * 9 7 6 26 26 H 1.09000 * 109.47552 * 59.99663 * 9 7 6 27 27 H 1.08998 * 109.47057 * 179.97438 * 9 7 6 28 28 H 1.09002 * 109.47401 * 183.95136 * 11 10 7 29 29 H 1.09001 * 109.46874 * 63.95149 * 11 10 7 30 30 H 1.09004 * 109.46970 * 303.95282 * 11 10 7 31 31 H 1.08997 * 109.46995 * 289.99871 * 12 10 7 32 32 H 1.09001 * 109.46848 * 49.99877 * 12 10 7 33 33 H 0.96999 * 119.99606 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3075 1.0839 0.0000 4 6 3.5765 0.6547 0.0006 5 7 3.5781 -0.6479 0.0067 6 6 2.3049 -1.0807 0.0005 7 6 1.8544 -2.5188 0.0006 8 1 0.7985 -2.5687 0.2663 9 6 2.0587 -3.1173 -1.3925 10 7 2.6423 -3.2785 0.9804 11 6 2.5449 -2.6750 2.3161 12 6 2.2294 -4.6881 1.0086 13 6 3.2094 -5.4822 1.8331 14 1 4.0544 -4.9890 2.2908 15 6 3.0276 -6.8383 2.0033 16 7 1.9985 -7.4386 1.4465 17 14 4.2420 -7.8225 3.0260 18 1 3.7985 -7.8368 4.4431 19 1 4.3066 -9.2147 2.5135 20 1 5.5864 -7.1983 2.9342 21 1 -0.3633 0.0004 1.0276 22 1 -0.3633 0.8899 -0.5141 23 1 -0.3633 -0.8901 -0.5135 24 1 4.4537 1.2847 0.0011 25 1 1.4741 -2.5535 -2.1195 26 1 3.1147 -3.0674 -1.6582 27 1 1.7333 -4.1576 -1.3922 28 1 3.1924 -3.2151 3.0070 29 1 1.5139 -2.7306 2.6656 30 1 2.8561 -1.6315 2.2669 31 1 1.2358 -4.7668 1.4498 32 1 2.2077 -5.0808 -0.0079 33 1 1.8707 -8.3927 1.5659 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259814610.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:29 Heat of formation + Delta-G solvation = 27.931564 kcal Electronic energy + Delta-G solvation = -15633.929888 eV Core-core repulsion = 13082.768930 eV Total energy + Delta-G solvation = -2551.160957 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -43.11509 -37.32451 -34.31081 -32.87791 -32.13981 -30.13230 -27.51009 -26.48970 -24.37375 -23.48999 -21.95002 -20.75707 -19.30141 -16.99305 -16.50390 -16.17853 -15.24335 -14.58815 -14.41107 -13.76841 -13.64264 -13.40360 -13.08959 -12.72072 -12.41514 -11.97435 -11.61328 -11.50404 -11.21701 -10.89215 -10.78455 -10.64310 -10.54592 -10.23662 -10.12281 -9.67774 -9.15094 -8.42193 -8.35815 -7.13022 -5.98149 -3.98054 1.65454 2.94988 3.00155 3.35397 3.41327 3.47038 4.39079 4.46787 4.83488 4.96048 5.14632 5.36694 5.39970 5.43919 5.59962 5.79341 5.86640 6.05932 6.12301 6.21562 6.26592 6.39944 6.46123 6.60997 6.81972 6.82977 7.35358 7.37968 7.86064 8.02519 8.17570 8.28364 8.62424 9.09761 9.65504 11.12941 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.046573 B = 0.006630 C = 0.006315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 601.062856 B = 4221.947802 C = 4432.631314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C -0.064 4.064 3 O -0.212 6.212 4 C 0.148 3.852 5 N -0.449 5.449 6 C 0.019 3.981 7 C 0.158 3.842 8 H 0.043 0.957 9 C -0.138 4.138 10 N -0.522 5.522 11 C 0.045 3.955 12 C 0.188 3.812 13 C -0.503 4.503 14 H 0.063 0.937 15 C 0.054 3.946 16 N -0.901 5.901 17 Si 0.897 3.103 18 H -0.282 1.282 19 H -0.287 1.287 20 H -0.273 1.273 21 H 0.080 0.920 22 H 0.074 0.926 23 H 0.090 0.910 24 H 0.245 0.755 25 H 0.045 0.955 26 H 0.066 0.934 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.007 0.993 30 H 0.041 0.959 31 H -0.011 1.011 32 H 0.039 0.961 33 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.606 14.853 -3.426 15.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.117 4.117 3 O -0.100 6.100 4 C -0.079 4.079 5 N -0.177 5.177 6 C -0.102 4.102 7 C 0.049 3.951 8 H 0.061 0.939 9 C -0.196 4.196 10 N -0.247 5.247 11 C -0.103 4.103 12 C 0.064 3.936 13 C -0.541 4.541 14 H 0.081 0.919 15 C -0.147 4.147 16 N -0.541 5.541 17 Si 0.725 3.275 18 H -0.208 1.208 19 H -0.213 1.213 20 H -0.198 1.198 21 H 0.099 0.901 22 H 0.093 0.907 23 H 0.109 0.891 24 H 0.261 0.739 25 H 0.064 0.936 26 H 0.085 0.915 27 H 0.091 0.909 28 H 0.091 0.909 29 H 0.025 0.975 30 H 0.060 0.940 31 H 0.007 0.993 32 H 0.057 0.943 33 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -1.662 14.347 -3.588 14.882 hybrid contribution -0.622 -0.125 0.862 1.070 sum -2.284 14.222 -2.726 14.660 Atomic orbital electron populations 1.20225 0.84376 1.03967 1.03562 1.23139 0.94783 0.84332 1.09447 1.84366 1.18529 1.36472 1.70589 1.28062 0.85444 0.91630 1.02756 1.70442 1.22980 1.09073 1.15232 1.21572 0.87896 0.96789 1.03920 1.19898 0.94356 0.85577 0.95300 0.93937 1.21826 1.02692 1.01165 0.93922 1.62105 1.53689 1.04145 1.04779 1.22130 0.98588 0.97868 0.91764 1.19858 0.94451 0.81409 0.97920 1.21175 1.09958 0.92494 1.30509 0.91871 1.24972 0.95714 0.97752 0.96216 1.69957 1.28985 1.10327 1.44815 0.86505 0.81650 0.79191 0.80137 1.20829 1.21284 1.19761 0.90128 0.90680 0.89089 0.73924 0.93586 0.91525 0.90933 0.90880 0.97480 0.94044 0.99332 0.94326 0.93011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.69 9.99 36.01 0.36 -0.33 16 2 C -0.06 -0.94 7.39 -35.69 -0.26 -1.20 16 3 O -0.21 -2.95 10.77 5.38 0.06 -2.89 16 4 C 0.15 1.96 13.23 52.10 0.69 2.65 16 5 N -0.45 -7.94 11.01 -11.17 -0.12 -8.06 16 6 C 0.02 0.33 4.27 -82.81 -0.35 -0.03 16 7 C 0.16 3.04 2.38 -68.87 -0.16 2.88 16 8 H 0.04 0.78 7.16 -51.93 -0.37 0.41 16 9 C -0.14 -2.52 8.97 37.15 0.33 -2.18 16 10 N -0.52 -12.00 4.61 -237.73 -1.10 -13.09 16 11 C 0.05 0.97 9.09 60.07 0.55 1.51 16 12 C 0.19 4.99 4.54 -4.97 -0.02 4.97 16 13 C -0.50 -14.49 8.51 -34.44 -0.29 -14.78 16 14 H 0.06 1.83 7.10 -52.48 -0.37 1.46 16 15 C 0.05 1.56 5.46 -17.82 -0.10 1.47 16 16 N -0.90 -26.98 13.29 55.43 0.74 -26.24 16 17 Si 0.90 22.07 29.54 -169.99 -5.02 17.05 16 18 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 19 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 20 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 21 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 22 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 23 H 0.09 0.92 7.45 -51.93 -0.39 0.54 16 24 H 0.24 1.93 8.06 -52.49 -0.42 1.51 16 25 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 27 H 0.07 1.40 6.20 -51.93 -0.32 1.08 16 28 H 0.07 1.65 6.86 -51.93 -0.36 1.29 16 29 H 0.01 0.14 8.14 -51.93 -0.42 -0.28 16 30 H 0.04 0.83 6.61 -51.93 -0.34 0.48 16 31 H -0.01 -0.31 8.12 -51.93 -0.42 -0.73 16 32 H 0.04 1.07 5.83 -51.93 -0.30 0.77 16 33 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 276.78 15.07 4.17 4.17 Total: -1.00 -32.97 276.78 -5.09 -38.06 By element: Atomic # 1 Polarization: 0.59 SS G_CDS: -4.55 Total: -3.95 kcal Atomic # 6 Polarization: -5.78 SS G_CDS: 0.73 Total: -5.04 kcal Atomic # 7 Polarization: -46.91 SS G_CDS: -0.48 Total: -47.39 kcal Atomic # 8 Polarization: -2.95 SS G_CDS: 0.06 Total: -2.89 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -32.97 -5.09 -38.06 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259814610.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.995 kcal (2) G-P(sol) polarization free energy of solvation -32.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.063 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds