Wall clock time and date at job start Mon Mar 30 2020 02:35:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.34749 * 126.44635 * 2 1 4 4 C 1.33965 * 107.75766 * 179.97438 * 3 2 1 5 5 N 1.30261 * 108.75892 * 359.73287 * 4 3 2 6 6 C 1.34331 * 126.44069 * 179.97438 * 2 1 3 7 7 C 1.50704 * 126.16681 * 0.02562 * 6 2 1 8 8 H 1.09000 * 109.47081 * 344.99409 * 7 6 2 9 9 C 1.52992 * 109.47325 * 105.00034 * 7 6 2 10 10 N 1.46898 * 109.46738 * 225.00047 * 7 6 2 11 11 C 1.46901 * 111.00443 * 56.04446 * 10 7 6 12 12 C 1.46906 * 110.99820 * 179.97438 * 10 7 6 13 13 C 1.50696 * 109.47351 * 169.99890 * 12 10 7 14 14 H 1.08007 * 119.99780 * 0.02562 * 13 12 10 15 15 C 1.37878 * 120.00506 * 180.02562 * 13 12 10 16 16 N 1.31515 * 119.99253 * 359.97438 * 15 13 12 17 17 Si 1.86795 * 120.00341 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.47212 * 89.99910 * 17 15 13 19 19 H 1.48494 * 109.47103 * 209.99646 * 17 15 13 20 20 H 1.48502 * 109.46911 * 329.99720 * 17 15 13 21 21 H 1.08996 * 109.46947 * 270.02088 * 1 2 3 22 22 H 1.09001 * 109.46903 * 30.01429 * 1 2 3 23 23 H 1.08993 * 109.47352 * 150.02030 * 1 2 3 24 24 H 1.08002 * 125.62266 * 180.02562 * 4 3 2 25 25 H 1.09007 * 109.46908 * 299.99721 * 9 7 6 26 26 H 1.09000 * 109.47552 * 59.99663 * 9 7 6 27 27 H 1.08998 * 109.47057 * 179.97438 * 9 7 6 28 28 H 1.09002 * 109.47401 * 183.95136 * 11 10 7 29 29 H 1.09001 * 109.46874 * 63.95149 * 11 10 7 30 30 H 1.09004 * 109.46970 * 303.95282 * 11 10 7 31 31 H 1.08997 * 109.46995 * 289.99871 * 12 10 7 32 32 H 1.09001 * 109.46848 * 49.99877 * 12 10 7 33 33 H 0.96999 * 119.99606 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3075 1.0839 0.0000 4 6 3.5765 0.6547 0.0006 5 7 3.5781 -0.6479 0.0067 6 6 2.3049 -1.0807 0.0005 7 6 1.8544 -2.5188 0.0006 8 1 0.7985 -2.5687 0.2663 9 6 2.0587 -3.1173 -1.3925 10 7 2.6423 -3.2785 0.9804 11 6 2.5449 -2.6750 2.3161 12 6 2.2294 -4.6881 1.0086 13 6 3.2094 -5.4822 1.8331 14 1 4.0544 -4.9890 2.2908 15 6 3.0276 -6.8383 2.0033 16 7 1.9985 -7.4386 1.4465 17 14 4.2420 -7.8225 3.0260 18 1 3.7985 -7.8368 4.4431 19 1 4.3066 -9.2147 2.5135 20 1 5.5864 -7.1983 2.9342 21 1 -0.3633 0.0004 1.0276 22 1 -0.3633 0.8899 -0.5141 23 1 -0.3633 -0.8901 -0.5135 24 1 4.4537 1.2847 0.0011 25 1 1.4741 -2.5535 -2.1195 26 1 3.1147 -3.0674 -1.6582 27 1 1.7333 -4.1576 -1.3922 28 1 3.1924 -3.2151 3.0070 29 1 1.5139 -2.7306 2.6656 30 1 2.8561 -1.6315 2.2669 31 1 1.2358 -4.7668 1.4498 32 1 2.2077 -5.0808 -0.0079 33 1 1.8707 -8.3927 1.5659 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259814610.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:29 Heat of formation + Delta-G solvation = 2.483512 kcal Electronic energy + Delta-G solvation = -15635.033398 eV Core-core repulsion = 13082.768930 eV Total energy + Delta-G solvation = -2552.264467 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -44.23851 -38.98042 -35.70614 -34.64781 -33.57390 -31.59975 -29.43918 -27.69763 -26.23530 -24.99932 -23.35782 -22.13841 -20.80711 -18.68009 -17.81117 -17.63741 -16.83238 -16.47579 -15.74631 -15.46814 -15.19862 -14.61825 -14.38494 -13.97851 -13.87676 -13.41106 -13.24516 -13.07038 -12.99046 -12.65938 -12.64245 -12.30666 -12.17191 -11.95827 -11.70270 -11.28750 -11.18315 -10.58011 -9.54671 -8.96844 -8.19316 -6.28186 0.57352 1.40438 1.42017 1.53941 1.81700 1.94243 2.41373 3.12614 3.24206 3.35582 3.86398 4.01173 4.25043 4.30964 4.43640 4.50936 4.62581 4.65079 4.66552 4.81213 4.94542 5.02862 5.11687 5.17397 5.20795 5.26820 5.33943 5.48243 5.66810 6.07957 6.36129 6.63435 6.86999 6.94732 7.40673 8.91640 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.046573 B = 0.006630 C = 0.006315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 601.062856 B = 4221.947802 C = 4432.631314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C -0.050 4.050 3 O -0.209 6.209 4 C 0.168 3.832 5 N -0.502 5.502 6 C -0.017 4.017 7 C 0.157 3.843 8 H 0.050 0.950 9 C -0.130 4.130 10 N -0.535 5.535 11 C 0.056 3.944 12 C 0.205 3.795 13 C -0.524 4.524 14 H 0.056 0.944 15 C 0.004 3.996 16 N -0.932 5.932 17 Si 0.967 3.033 18 H -0.272 1.272 19 H -0.279 1.279 20 H -0.269 1.269 21 H 0.091 0.909 22 H 0.100 0.900 23 H 0.094 0.906 24 H 0.292 0.708 25 H 0.078 0.922 26 H 0.048 0.952 27 H 0.051 0.949 28 H 0.054 0.946 29 H 0.010 0.990 30 H 0.056 0.944 31 H -0.037 1.037 32 H 0.021 0.979 33 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.413 16.418 -3.204 16.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.103 4.103 3 O -0.097 6.097 4 C -0.058 4.058 5 N -0.230 5.230 6 C -0.136 4.136 7 C 0.048 3.952 8 H 0.068 0.932 9 C -0.188 4.188 10 N -0.260 5.260 11 C -0.093 4.093 12 C 0.079 3.921 13 C -0.563 4.563 14 H 0.074 0.926 15 C -0.194 4.194 16 N -0.573 5.573 17 Si 0.792 3.208 18 H -0.197 1.197 19 H -0.204 1.204 20 H -0.194 1.194 21 H 0.109 0.891 22 H 0.119 0.881 23 H 0.113 0.887 24 H 0.307 0.693 25 H 0.097 0.903 26 H 0.067 0.933 27 H 0.070 0.930 28 H 0.073 0.927 29 H 0.028 0.972 30 H 0.075 0.925 31 H -0.019 1.019 32 H 0.039 0.961 33 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -1.477 15.924 -3.369 16.343 hybrid contribution -0.688 -0.503 0.749 1.134 sum -2.164 15.421 -2.621 15.791 Atomic orbital electron populations 1.20429 0.81821 1.05438 1.04673 1.23631 0.96135 0.83589 1.06986 1.84416 1.18796 1.36040 1.70399 1.29046 0.86297 0.90890 0.99562 1.70362 1.23546 1.11407 1.17667 1.21262 0.88797 0.96152 1.07364 1.19901 0.94260 0.86753 0.94268 0.93232 1.21739 1.01957 1.00422 0.94637 1.61990 1.54911 1.02858 1.06260 1.22000 0.98334 0.98189 0.90749 1.19497 0.92675 0.83743 0.96145 1.21455 1.10272 0.93360 1.31184 0.92585 1.25849 0.97527 0.98766 0.97245 1.70069 1.30548 1.10839 1.45825 0.85415 0.79129 0.77593 0.78679 1.19744 1.20444 1.19367 0.89081 0.88140 0.88708 0.69321 0.90341 0.93283 0.92979 0.92725 0.97152 0.92482 1.01929 0.96102 0.92638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.25 9.99 71.24 0.71 -0.53 16 2 C -0.05 -1.34 7.39 24.79 0.18 -1.15 16 3 O -0.21 -5.17 10.77 -3.68 -0.04 -5.21 16 4 C 0.17 4.00 13.23 130.48 1.73 5.73 16 5 N -0.50 -17.06 11.01 -304.06 -3.35 -20.41 16 6 C -0.02 -0.57 4.27 41.26 0.18 -0.39 16 7 C 0.16 6.06 2.38 44.17 0.11 6.16 16 8 H 0.05 1.82 7.16 -2.39 -0.02 1.80 16 9 C -0.13 -4.79 8.97 71.98 0.65 -4.15 16 10 N -0.54 -25.13 4.61 -906.04 -4.18 -29.31 16 11 C 0.06 2.41 9.09 127.69 1.16 3.57 16 12 C 0.21 11.29 4.54 85.55 0.39 11.68 16 13 C -0.52 -30.95 8.51 25.60 0.22 -30.73 16 14 H 0.06 3.31 7.10 -2.91 -0.02 3.29 16 15 C 0.00 0.24 5.46 84.65 0.46 0.70 16 16 N -0.93 -56.69 13.29 21.45 0.28 -56.41 16 17 Si 0.97 45.49 29.54 68.60 2.03 47.52 16 18 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 19 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 20 H -0.27 -12.40 7.11 99.48 0.71 -11.70 16 21 H 0.09 1.54 8.14 -2.39 -0.02 1.53 16 22 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 23 H 0.09 1.70 7.45 -2.39 -0.02 1.68 16 24 H 0.29 3.42 8.06 -2.91 -0.02 3.40 16 25 H 0.08 2.31 8.14 -2.38 -0.02 2.29 16 26 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 27 H 0.05 2.09 6.20 -2.39 -0.01 2.08 16 28 H 0.05 2.51 6.86 -2.39 -0.02 2.50 16 29 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 30 H 0.06 2.26 6.61 -2.38 -0.02 2.25 16 31 H -0.04 -2.17 8.12 -2.39 -0.02 -2.19 16 32 H 0.02 1.21 5.83 -2.39 -0.01 1.20 16 33 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 Total: -1.00 -72.01 276.78 1.61 -70.39 By element: Atomic # 1 Polarization: 1.45 SS G_CDS: 1.09 Total: 2.54 kcal Atomic # 6 Polarization: -14.89 SS G_CDS: 5.78 Total: -9.11 kcal Atomic # 7 Polarization: -98.89 SS G_CDS: -7.25 Total: -106.13 kcal Atomic # 8 Polarization: -5.17 SS G_CDS: -0.04 Total: -5.21 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 2.03 Total: 47.52 kcal Total: -72.01 1.61 -70.39 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259814610.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.877 kcal (2) G-P(sol) polarization free energy of solvation -72.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.394 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds