Wall clock time and date at job start Mon Mar 30 2020 03:16:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46500 * 109.47220 * 2 1 4 4 C 1.46498 * 119.99855 * 269.99874 * 3 2 1 5 5 C 1.53001 * 109.47236 * 269.99973 * 4 3 2 6 6 C 1.39101 * 120.00234 * 90.00207 * 3 2 1 7 7 C 1.42094 * 126.89983 * 4.99368 * 6 3 2 8 8 C 1.35212 * 103.95122 * 179.74111 * 7 6 3 9 9 C 1.50708 * 126.68214 * 180.25786 * 8 7 6 10 10 C 1.50704 * 109.46752 * 90.00875 * 9 8 7 11 11 H 1.08005 * 119.99799 * 359.97438 * 10 9 8 12 12 C 1.37877 * 119.99934 * 180.02562 * 10 9 8 13 13 N 1.31511 * 119.99762 * 359.97438 * 12 10 9 14 14 Si 1.86793 * 119.99945 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.47283 * 359.97438 * 14 12 10 16 16 H 1.48501 * 109.47360 * 119.99650 * 14 12 10 17 17 H 1.48502 * 109.46970 * 239.99662 * 14 12 10 18 18 O 1.34098 * 106.63092 * 0.26902 * 8 7 6 19 19 N 1.20908 * 111.76520 * 359.97438 * 18 8 7 20 20 H 1.09002 * 109.47231 * 300.00185 * 1 2 3 21 21 H 1.08997 * 109.47135 * 59.99937 * 1 2 3 22 22 H 1.08999 * 109.47215 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.47231 * 239.99815 * 2 1 3 24 24 H 1.09004 * 109.47057 * 119.99685 * 2 1 3 25 25 H 1.09000 * 109.47313 * 30.00063 * 4 3 2 26 26 H 1.09004 * 109.47288 * 150.00346 * 4 3 2 27 27 H 1.09000 * 109.47043 * 300.00255 * 5 4 3 28 28 H 1.08999 * 109.47384 * 59.99986 * 5 4 3 29 29 H 1.09005 * 109.47358 * 179.97438 * 5 4 3 30 30 H 1.08002 * 128.02738 * 0.02562 * 7 6 3 31 31 H 1.09001 * 109.47123 * 210.00193 * 9 8 7 32 32 H 1.08998 * 109.47064 * 330.01054 * 9 8 7 33 33 H 0.97002 * 120.00078 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.7075 1.8313 -1.7104 6 6 2.2502 2.0370 1.2046 7 6 2.1589 1.4819 2.5095 8 6 2.4805 2.5115 3.3249 9 6 2.5485 2.4805 4.8301 10 6 3.9406 2.0976 5.2622 11 1 4.6999 1.8964 4.5210 12 6 4.2445 2.0032 6.6038 13 7 3.3197 2.2477 7.5062 14 14 5.9701 1.5293 7.1394 15 1 6.8177 1.3088 5.9401 16 1 6.5503 2.6209 7.9622 17 1 5.9140 0.2809 7.9417 18 8 2.7270 3.5655 2.5333 19 7 2.5928 3.2890 1.3639 20 1 -0.3634 0.5139 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0276 0.0005 23 1 1.8933 -0.5139 -0.8900 24 1 1.8933 -0.5138 0.8900 25 1 1.5817 1.6877 -2.0284 26 1 2.0956 3.1410 -1.1384 27 1 4.3883 2.2154 -0.9507 28 1 3.8745 0.7621 -1.8407 29 1 3.8891 2.3448 -2.6547 30 1 1.8981 0.4709 2.7857 31 1 2.3038 3.4664 5.2253 32 1 1.8358 1.7491 5.2110 33 1 3.5333 2.1808 8.4501 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259844226.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:21 Heat of formation + Delta-G solvation = 36.360906 kcal Electronic energy + Delta-G solvation = -15292.579319 eV Core-core repulsion = 12741.783885 eV Total energy + Delta-G solvation = -2550.795433 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -45.37637 -38.79077 -35.81444 -34.01422 -33.32961 -32.88065 -29.49917 -29.43795 -25.56047 -24.67710 -24.12686 -22.78278 -20.39144 -18.83357 -18.22071 -17.86609 -16.90849 -16.60882 -16.28483 -15.16731 -15.03835 -14.46886 -14.35439 -14.27143 -14.15140 -13.50155 -13.34610 -12.92082 -12.81671 -12.65642 -12.62594 -12.02532 -11.98793 -11.88620 -11.82081 -11.69721 -11.65169 -10.64323 -10.05074 -8.73136 -8.26615 -6.39700 0.82173 1.41458 1.42935 1.55729 1.70718 1.91266 2.39043 2.57976 3.07351 3.60966 3.88120 4.19890 4.24799 4.32491 4.42140 4.47873 4.51564 4.58362 4.67026 4.85178 4.94037 4.96927 5.04186 5.12419 5.24397 5.27248 5.34310 5.38435 5.65399 6.00963 6.25463 6.34835 6.67969 7.29006 7.68852 8.83959 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.036278 B = 0.006282 C = 0.006103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.626438 B = 4455.814282 C = 4586.663391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.125 3.875 3 N -0.596 5.596 4 C 0.125 3.875 5 C -0.162 4.162 6 C 0.293 3.707 7 C -0.292 4.292 8 C 0.033 3.967 9 C 0.094 3.906 10 C -0.538 4.538 11 H 0.052 0.948 12 C 0.015 3.985 13 N -0.922 5.922 14 Si 0.969 3.031 15 H -0.270 1.270 16 H -0.275 1.275 17 H -0.271 1.271 18 O 0.038 5.962 19 N -0.459 5.459 20 H 0.034 0.966 21 H 0.061 0.939 22 H 0.087 0.913 23 H 0.105 0.895 24 H 0.068 0.932 25 H 0.106 0.894 26 H 0.055 0.945 27 H 0.024 0.976 28 H 0.066 0.934 29 H 0.083 0.917 30 H 0.176 0.824 31 H 0.023 0.977 32 H 0.047 0.953 33 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.468 -6.111 -15.899 17.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.003 3.997 3 N -0.321 5.321 4 C 0.003 3.997 5 C -0.221 4.221 6 C 0.041 3.959 7 C -0.316 4.316 8 C -0.030 4.030 9 C 0.056 3.944 10 C -0.576 4.576 11 H 0.071 0.929 12 C -0.185 4.185 13 N -0.561 5.561 14 Si 0.793 3.207 15 H -0.195 1.195 16 H -0.200 1.200 17 H -0.196 1.196 18 O -0.006 6.006 19 N -0.192 5.192 20 H 0.053 0.947 21 H 0.080 0.920 22 H 0.105 0.895 23 H 0.123 0.877 24 H 0.087 0.913 25 H 0.124 0.876 26 H 0.073 0.927 27 H 0.043 0.957 28 H 0.085 0.915 29 H 0.102 0.898 30 H 0.193 0.807 31 H 0.041 0.959 32 H 0.065 0.935 33 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -3.283 -5.107 -16.515 17.596 hybrid contribution 0.545 -0.644 1.074 1.366 sum -2.738 -5.751 -15.441 16.703 Atomic orbital electron populations 1.22190 0.95605 1.03024 1.01583 1.21600 0.94513 0.79712 1.03867 1.45873 1.72387 1.13858 0.99979 1.21459 0.97228 0.96844 0.84182 1.22144 0.96324 1.02518 1.01102 1.20711 0.96949 0.89289 0.88934 1.22041 1.17407 1.02117 0.90003 1.25082 0.94402 0.86539 0.96987 1.17769 0.98076 0.98314 0.80203 1.21218 0.95727 1.48348 0.92344 0.92939 1.25811 1.01780 0.94621 0.96254 1.70039 1.35232 1.49123 1.01689 0.85338 0.78817 0.78283 0.78259 1.19455 1.20020 1.19579 1.84708 1.68828 1.35785 1.11249 1.73855 1.32107 1.16087 0.97180 0.94670 0.91984 0.89473 0.87673 0.91331 0.87632 0.92682 0.95702 0.91480 0.89790 0.80699 0.95850 0.93458 0.92080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.04 10.24 71.98 0.74 -2.30 16 2 C 0.13 2.58 6.21 86.38 0.54 3.12 16 3 N -0.60 -16.84 2.59 -704.93 -1.83 -18.66 16 4 C 0.13 2.90 6.31 86.38 0.55 3.45 16 5 C -0.16 -3.50 10.24 71.98 0.74 -2.76 16 6 C 0.29 11.24 7.64 134.25 1.03 12.26 16 7 C -0.29 -11.90 10.19 22.53 0.23 -11.67 16 8 C 0.03 1.56 6.66 24.99 0.17 1.73 16 9 C 0.09 4.97 5.54 29.11 0.16 5.13 16 10 C -0.54 -30.44 9.09 25.60 0.23 -30.21 16 11 H 0.05 2.99 7.74 -2.91 -0.02 2.97 16 12 C 0.01 0.83 5.46 84.66 0.46 1.29 16 13 N -0.92 -53.39 13.29 21.45 0.28 -53.11 16 14 Si 0.97 43.46 29.54 68.60 2.03 45.49 16 15 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 16 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 17 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 18 O 0.04 1.84 11.19 71.10 0.80 2.63 16 19 N -0.46 -20.08 11.49 -56.45 -0.65 -20.73 16 20 H 0.03 0.82 8.14 -2.39 -0.02 0.80 16 21 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 22 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 23 H 0.11 1.53 8.07 -2.39 -0.02 1.51 16 24 H 0.07 1.53 6.92 -2.38 -0.02 1.51 16 25 H 0.11 1.69 8.07 -2.39 -0.02 1.68 16 26 H 0.05 1.51 7.67 -2.39 -0.02 1.49 16 27 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 28 H 0.07 1.25 8.14 -2.39 -0.02 1.24 16 29 H 0.08 1.41 8.14 -2.38 -0.02 1.39 16 30 H 0.18 6.30 7.44 -2.91 -0.02 6.28 16 31 H 0.02 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.05 2.51 8.14 -2.39 -0.02 2.49 16 33 H 0.27 14.56 8.31 -92.71 -0.77 13.79 16 Total: -1.00 -64.99 286.34 6.54 -58.45 By element: Atomic # 1 Polarization: 4.81 SS G_CDS: 1.08 Total: 5.89 kcal Atomic # 6 Polarization: -24.79 SS G_CDS: 4.83 Total: -19.96 kcal Atomic # 7 Polarization: -90.31 SS G_CDS: -2.19 Total: -92.50 kcal Atomic # 8 Polarization: 1.84 SS G_CDS: 0.80 Total: 2.63 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.49 kcal Total: -64.99 6.54 -58.45 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259844226.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.813 kcal (2) G-P(sol) polarization free energy of solvation -64.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.453 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds