Wall clock time and date at job start Mon Mar 30 2020 03:11:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09008 * 109.47236 * 2 1 4 4 C 1.53002 * 109.47134 * 240.00597 * 2 1 3 5 5 C 1.52997 * 109.47154 * 175.00128 * 4 2 1 6 6 C 1.50705 * 109.47150 * 179.97438 * 5 4 2 7 7 C 1.41382 * 126.79795 * 124.70708 * 6 5 4 8 8 C 1.35451 * 103.98162 * 179.88924 * 7 6 5 9 9 O 1.34042 * 106.44703 * 0.37208 * 8 7 6 10 10 N 1.20920 * 111.56539 * 359.74457 * 9 8 7 11 11 N 1.46503 * 109.47312 * 120.00410 * 2 1 3 12 12 C 1.46499 * 119.99861 * 59.99640 * 11 2 1 13 13 C 1.36932 * 119.99874 * 240.00284 * 11 2 1 14 14 H 1.08003 * 120.00480 * 21.91183 * 13 11 2 15 15 C 1.38810 * 120.00005 * 201.91286 * 13 11 2 16 16 N 1.31620 * 119.99976 * 12.70814 * 15 13 11 17 17 Si 1.86795 * 120.00251 * 192.70403 * 15 13 11 18 18 H 1.48503 * 109.47151 * 90.00101 * 17 15 13 19 19 H 1.48500 * 109.47275 * 209.99825 * 17 15 13 20 20 H 1.48503 * 109.47346 * 330.00084 * 17 15 13 21 21 H 1.08995 * 109.47279 * 179.97438 * 1 2 3 22 22 H 1.08997 * 109.47045 * 300.00195 * 1 2 3 23 23 H 1.09002 * 109.47181 * 59.99735 * 1 2 3 24 24 H 1.08994 * 109.47288 * 54.99726 * 4 2 1 25 25 H 1.09001 * 109.46962 * 294.99746 * 4 2 1 26 26 H 1.09000 * 109.47386 * 299.99560 * 5 4 2 27 27 H 1.09004 * 109.47172 * 59.99607 * 5 4 2 28 28 H 1.08000 * 128.01135 * 0.03072 * 7 6 5 29 29 H 1.07999 * 126.77630 * 180.09758 * 8 7 6 30 30 H 1.09001 * 109.46616 * 94.32379 * 12 11 2 31 31 H 1.08998 * 109.47091 * 214.32151 * 12 11 2 32 32 H 1.08998 * 109.47187 * 334.32531 * 12 11 2 33 33 H 0.96999 * 120.00510 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 3.5648 -0.6132 -1.3137 6 6 4.0672 -1.3240 -2.5440 7 6 4.8785 -0.7785 -3.5653 8 6 5.0514 -1.8065 -4.4301 9 8 4.3736 -2.8463 -3.9240 10 7 3.8355 -2.5602 -2.8796 11 7 2.0184 -0.6907 1.1961 12 6 1.6644 -2.0933 1.4279 13 6 2.8056 -0.0252 2.0975 14 1 2.7851 1.0538 2.1393 15 6 3.6300 -0.7375 2.9576 16 7 3.8491 -2.0184 2.7490 17 14 4.4288 0.1220 4.4111 18 1 3.5341 0.0310 5.5928 19 1 5.7259 -0.5313 4.7209 20 1 4.6614 1.5497 4.0752 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3633 0.5138 0.8899 23 1 -0.3633 0.5139 -0.8900 24 1 1.6054 -0.2616 -2.1370 25 1 1.7517 -1.7714 -1.2057 26 1 3.8532 0.4371 -1.3574 27 1 3.9994 -1.0728 -0.4260 28 1 5.2715 0.2248 -3.6379 29 1 5.6192 -1.7902 -5.3487 30 1 2.4540 -2.7362 1.0389 31 1 1.5486 -2.2668 2.4977 32 1 0.7274 -2.3203 0.9194 33 1 4.4249 -2.5163 3.3503 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259854307.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:58 Heat of formation + Delta-G solvation = 74.683840 kcal Electronic energy + Delta-G solvation = -15624.587119 eV Core-core repulsion = 13075.453493 eV Total energy + Delta-G solvation = -2549.133626 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -44.59743 -36.96845 -34.50894 -32.56660 -31.43997 -29.92891 -28.63902 -25.90488 -24.19355 -22.81208 -22.72730 -20.33228 -18.79817 -17.43133 -17.19577 -16.76032 -15.09599 -14.77005 -14.11845 -13.48144 -13.38241 -13.06190 -12.90146 -12.31036 -11.97236 -11.59547 -11.50832 -11.08734 -10.85246 -10.76698 -10.60470 -10.31146 -10.14888 -10.04090 -9.70007 -9.63089 -9.58279 -9.23683 -8.46344 -6.66880 -5.63993 -3.09114 1.78157 2.62655 3.41549 3.47945 3.49096 3.54596 4.54879 4.63615 4.85666 5.39779 5.48328 5.50897 5.57686 5.66271 5.92333 5.97334 6.08593 6.19004 6.28391 6.43997 6.50167 6.56779 6.67158 6.89057 6.99726 7.11154 7.12291 7.51071 7.83435 7.90165 8.47894 8.65809 9.32274 9.96801 10.46662 11.40084 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.027524 B = 0.007985 C = 0.007004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.040201 B = 3505.732240 C = 3996.917593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.170 3.830 3 H 0.061 0.939 4 C -0.120 4.120 5 C -0.038 4.038 6 C 0.033 3.967 7 C -0.236 4.236 8 C -0.076 4.076 9 O 0.090 5.910 10 N -0.362 5.362 11 N -0.595 5.595 12 C 0.164 3.836 13 C -0.250 4.250 14 H 0.067 0.933 15 C 0.000 4.000 16 N -0.906 5.906 17 Si 0.901 3.099 18 H -0.289 1.289 19 H -0.293 1.293 20 H -0.281 1.281 21 H 0.048 0.952 22 H 0.051 0.949 23 H 0.040 0.960 24 H 0.043 0.957 25 H 0.061 0.939 26 H 0.073 0.927 27 H 0.108 0.892 28 H 0.167 0.833 29 H 0.210 0.790 30 H 0.028 0.972 31 H 0.040 0.960 32 H -0.003 1.003 33 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.258 2.773 -12.386 12.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.062 3.938 3 H 0.080 0.920 4 C -0.160 4.160 5 C -0.076 4.076 6 C -0.126 4.126 7 C -0.257 4.257 8 C -0.158 4.158 9 O 0.025 5.975 10 N -0.067 5.067 11 N -0.318 5.318 12 C 0.020 3.980 13 C -0.380 4.380 14 H 0.085 0.915 15 C -0.198 4.198 16 N -0.552 5.552 17 Si 0.731 3.269 18 H -0.217 1.217 19 H -0.219 1.219 20 H -0.206 1.206 21 H 0.067 0.933 22 H 0.070 0.930 23 H 0.060 0.940 24 H 0.062 0.938 25 H 0.080 0.920 26 H 0.092 0.908 27 H 0.127 0.873 28 H 0.184 0.816 29 H 0.227 0.773 30 H 0.046 0.954 31 H 0.059 0.941 32 H 0.016 0.984 33 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -0.326 1.643 -11.720 11.839 hybrid contribution 1.057 1.169 0.530 1.662 sum 0.731 2.811 -11.190 11.561 Atomic orbital electron populations 1.22246 0.98683 1.00991 1.00026 1.20381 0.91601 0.95549 0.86258 0.92030 1.22032 0.93775 1.01770 0.98423 1.20041 0.96796 0.98546 0.92191 1.24101 0.98321 0.90536 0.99616 1.22797 1.04994 1.02031 0.95905 1.25918 1.00638 0.87404 1.01811 1.84850 1.48630 1.36173 1.27815 1.73871 1.16880 1.17318 0.98652 1.43948 1.57751 1.09561 1.20526 1.20723 0.93877 0.84706 0.98718 1.19216 1.16422 0.90894 1.11462 0.91547 1.24975 0.98157 0.96157 1.00489 1.70083 1.39979 1.07360 1.37733 0.86310 0.78557 0.78723 0.83276 1.21670 1.21921 1.20620 0.93297 0.92988 0.94050 0.93806 0.92038 0.90791 0.87348 0.81553 0.77329 0.95389 0.94115 0.98442 0.93895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.89 9.18 37.16 0.34 -2.55 16 2 C 0.17 3.50 2.71 -67.93 -0.18 3.31 16 3 H 0.06 1.25 7.86 -51.92 -0.41 0.84 16 4 C -0.12 -2.29 4.62 -26.73 -0.12 -2.42 16 5 C -0.04 -0.73 5.70 -27.88 -0.16 -0.89 16 6 C 0.03 0.59 6.59 -82.10 -0.54 0.05 16 7 C -0.24 -3.21 11.12 -39.38 -0.44 -3.65 16 8 C -0.08 -0.89 12.30 29.74 0.37 -0.52 16 9 O 0.09 1.40 11.20 17.17 0.19 1.60 16 10 N -0.36 -6.81 12.06 33.42 0.40 -6.41 16 11 N -0.59 -14.80 2.27 -173.48 -0.39 -15.20 16 12 C 0.16 4.17 7.91 59.85 0.47 4.65 16 13 C -0.25 -6.79 9.60 -15.06 -0.14 -6.94 16 14 H 0.07 1.77 7.81 -52.48 -0.41 1.36 16 15 C 0.00 0.01 5.10 -17.43 -0.09 -0.08 16 16 N -0.91 -26.58 10.63 55.49 0.59 -25.99 16 17 Si 0.90 21.99 29.57 -169.99 -5.03 16.96 16 18 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 19 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 20 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 21 H 0.05 0.89 6.66 -51.93 -0.35 0.55 16 22 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 23 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 24 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 25 H 0.06 1.29 7.51 -51.93 -0.39 0.90 16 26 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 27 H 0.11 2.60 7.75 -51.93 -0.40 2.20 16 28 H 0.17 1.79 8.06 -52.49 -0.42 1.37 16 29 H 0.21 1.33 8.06 -52.49 -0.42 0.91 16 30 H 0.03 0.78 7.42 -51.93 -0.39 0.39 16 31 H 0.04 1.11 7.20 -51.93 -0.37 0.74 16 32 H 0.00 -0.07 6.43 -51.93 -0.33 -0.40 16 33 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 277.50 15.07 4.18 4.18 Total: -1.00 -30.78 277.50 -5.27 -36.05 By element: Atomic # 1 Polarization: 2.56 SS G_CDS: -4.72 Total: -2.16 kcal Atomic # 6 Polarization: -8.54 SS G_CDS: -0.50 Total: -9.03 kcal Atomic # 7 Polarization: -48.19 SS G_CDS: 0.60 Total: -47.59 kcal Atomic # 8 Polarization: 1.40 SS G_CDS: 0.19 Total: 1.60 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.03 Total: 16.96 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -30.78 -5.27 -36.05 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259854307.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.735 kcal (2) G-P(sol) polarization free energy of solvation -30.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.051 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds