Wall clock time and date at job start Mon Mar 30 2020 03:11:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09008 * 109.47236 * 2 1 4 4 C 1.53002 * 109.47134 * 240.00597 * 2 1 3 5 5 C 1.52997 * 109.47154 * 175.00128 * 4 2 1 6 6 C 1.50705 * 109.47150 * 179.97438 * 5 4 2 7 7 C 1.41382 * 126.79795 * 124.70708 * 6 5 4 8 8 C 1.35451 * 103.98162 * 179.88924 * 7 6 5 9 9 O 1.34042 * 106.44703 * 0.37208 * 8 7 6 10 10 N 1.20920 * 111.56539 * 359.74457 * 9 8 7 11 11 N 1.46503 * 109.47312 * 120.00410 * 2 1 3 12 12 C 1.46499 * 119.99861 * 59.99640 * 11 2 1 13 13 C 1.36932 * 119.99874 * 240.00284 * 11 2 1 14 14 H 1.08003 * 120.00480 * 21.91183 * 13 11 2 15 15 C 1.38810 * 120.00005 * 201.91286 * 13 11 2 16 16 N 1.31620 * 119.99976 * 12.70814 * 15 13 11 17 17 Si 1.86795 * 120.00251 * 192.70403 * 15 13 11 18 18 H 1.48503 * 109.47151 * 90.00101 * 17 15 13 19 19 H 1.48500 * 109.47275 * 209.99825 * 17 15 13 20 20 H 1.48503 * 109.47346 * 330.00084 * 17 15 13 21 21 H 1.08995 * 109.47279 * 179.97438 * 1 2 3 22 22 H 1.08997 * 109.47045 * 300.00195 * 1 2 3 23 23 H 1.09002 * 109.47181 * 59.99735 * 1 2 3 24 24 H 1.08994 * 109.47288 * 54.99726 * 4 2 1 25 25 H 1.09001 * 109.46962 * 294.99746 * 4 2 1 26 26 H 1.09000 * 109.47386 * 299.99560 * 5 4 2 27 27 H 1.09004 * 109.47172 * 59.99607 * 5 4 2 28 28 H 1.08000 * 128.01135 * 0.03072 * 7 6 5 29 29 H 1.07999 * 126.77630 * 180.09758 * 8 7 6 30 30 H 1.09001 * 109.46616 * 94.32379 * 12 11 2 31 31 H 1.08998 * 109.47091 * 214.32151 * 12 11 2 32 32 H 1.08998 * 109.47187 * 334.32531 * 12 11 2 33 33 H 0.96999 * 120.00510 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 3.5648 -0.6132 -1.3137 6 6 4.0672 -1.3240 -2.5440 7 6 4.8785 -0.7785 -3.5653 8 6 5.0514 -1.8065 -4.4301 9 8 4.3736 -2.8463 -3.9240 10 7 3.8355 -2.5602 -2.8796 11 7 2.0184 -0.6907 1.1961 12 6 1.6644 -2.0933 1.4279 13 6 2.8056 -0.0252 2.0975 14 1 2.7851 1.0538 2.1393 15 6 3.6300 -0.7375 2.9576 16 7 3.8491 -2.0184 2.7490 17 14 4.4288 0.1220 4.4111 18 1 3.5341 0.0310 5.5928 19 1 5.7259 -0.5313 4.7209 20 1 4.6614 1.5497 4.0752 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3633 0.5138 0.8899 23 1 -0.3633 0.5139 -0.8900 24 1 1.6054 -0.2616 -2.1370 25 1 1.7517 -1.7714 -1.2057 26 1 3.8532 0.4371 -1.3574 27 1 3.9994 -1.0728 -0.4260 28 1 5.2715 0.2248 -3.6379 29 1 5.6192 -1.7902 -5.3487 30 1 2.4540 -2.7362 1.0389 31 1 1.5486 -2.2668 2.4977 32 1 0.7274 -2.3203 0.9194 33 1 4.4249 -2.5163 3.3503 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259854307.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:58 Heat of formation + Delta-G solvation = 56.033065 kcal Electronic energy + Delta-G solvation = -15625.395878 eV Core-core repulsion = 13075.453493 eV Total energy + Delta-G solvation = -2549.942385 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -45.82282 -38.72224 -35.98690 -34.34405 -32.64950 -31.70000 -30.25571 -28.01059 -25.72857 -24.62383 -23.97442 -21.59167 -20.53498 -18.84982 -18.56190 -18.43546 -17.06095 -16.14697 -15.81384 -15.17132 -14.96883 -14.59623 -14.25878 -14.02979 -13.56003 -13.36376 -13.06122 -12.79264 -12.58483 -12.44175 -12.29969 -12.25882 -12.00535 -11.77650 -11.52120 -11.34527 -10.82646 -10.58035 -10.45116 -8.73227 -7.76534 -5.23456 0.74897 1.40437 1.46384 1.47985 1.56121 2.53299 2.61213 3.35688 3.40216 3.67134 3.72595 4.21553 4.33909 4.39794 4.42906 4.62742 4.69207 4.80096 4.84316 4.86313 4.95597 5.11194 5.16193 5.22869 5.28555 5.42001 5.49726 5.58414 5.68474 5.74604 6.37545 7.19954 7.52552 7.94107 8.39559 9.26389 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.027524 B = 0.007985 C = 0.007004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.040201 B = 3505.732240 C = 3996.917593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.162 3.838 3 H 0.067 0.933 4 C -0.107 4.107 5 C -0.028 4.028 6 C 0.002 3.998 7 C -0.243 4.243 8 C -0.048 4.048 9 O 0.087 5.913 10 N -0.406 5.406 11 N -0.606 5.606 12 C 0.185 3.815 13 C -0.251 4.251 14 H 0.074 0.926 15 C -0.056 4.056 16 N -0.940 5.940 17 Si 0.964 3.036 18 H -0.290 1.290 19 H -0.300 1.300 20 H -0.265 1.265 21 H 0.042 0.958 22 H 0.046 0.954 23 H 0.075 0.925 24 H 0.073 0.927 25 H 0.036 0.964 26 H 0.090 0.910 27 H 0.052 0.948 28 H 0.196 0.804 29 H 0.268 0.732 30 H -0.006 1.006 31 H 0.012 0.988 32 H 0.022 0.978 33 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.383 4.556 -14.421 15.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.056 3.944 3 H 0.085 0.915 4 C -0.147 4.147 5 C -0.066 4.066 6 C -0.156 4.156 7 C -0.264 4.264 8 C -0.129 4.129 9 O 0.022 5.978 10 N -0.112 5.112 11 N -0.329 5.329 12 C 0.040 3.960 13 C -0.381 4.381 14 H 0.092 0.908 15 C -0.251 4.251 16 N -0.587 5.587 17 Si 0.793 3.207 18 H -0.217 1.217 19 H -0.227 1.227 20 H -0.190 1.190 21 H 0.061 0.939 22 H 0.065 0.935 23 H 0.094 0.906 24 H 0.092 0.908 25 H 0.054 0.946 26 H 0.108 0.892 27 H 0.070 0.930 28 H 0.213 0.787 29 H 0.284 0.716 30 H 0.012 0.988 31 H 0.031 0.969 32 H 0.041 0.959 33 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -0.230 3.463 -13.770 14.200 hybrid contribution 1.030 0.628 1.025 1.583 sum 0.800 4.092 -12.745 13.409 Atomic orbital electron populations 1.22122 0.96241 1.01053 1.01528 1.20657 0.93338 0.95350 0.85065 0.91488 1.21867 0.93869 1.00144 0.98798 1.19773 0.96669 0.99083 0.91066 1.24119 1.00200 0.90972 1.00286 1.23133 1.04508 1.03919 0.94857 1.26941 0.98382 0.85185 1.02387 1.84787 1.48712 1.37400 1.26928 1.73877 1.18746 1.18254 1.00319 1.44139 1.57586 1.09224 1.21965 1.20349 0.93799 0.85024 0.96830 1.19567 1.15754 0.91339 1.11484 0.90830 1.25728 0.99374 0.96813 1.03181 1.70278 1.41085 1.08845 1.38538 0.85302 0.77028 0.78339 0.80023 1.21706 1.22739 1.18966 0.93919 0.93451 0.90575 0.90849 0.94550 0.89166 0.92991 0.78691 0.71630 0.98768 0.96875 0.95919 0.94753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.11 9.18 71.98 0.66 -4.45 16 2 C 0.16 6.53 2.71 44.99 0.12 6.65 16 3 H 0.07 2.61 7.86 -2.38 -0.02 2.60 16 4 C -0.11 -4.04 4.62 30.59 0.14 -3.90 16 5 C -0.03 -1.09 5.70 29.85 0.17 -0.92 16 6 C 0.00 0.07 6.59 43.58 0.29 0.35 16 7 C -0.24 -5.95 11.12 22.40 0.25 -5.70 16 8 C -0.05 -0.94 12.30 67.18 0.83 -0.12 16 9 O 0.09 2.58 11.20 71.61 0.80 3.38 16 10 N -0.41 -15.32 12.06 -49.57 -0.60 -15.92 16 11 N -0.61 -30.62 2.27 -702.77 -1.59 -32.21 16 12 C 0.19 9.76 7.91 127.77 1.01 10.77 16 13 C -0.25 -13.77 9.60 84.03 0.81 -12.96 16 14 H 0.07 3.87 7.81 -2.91 -0.02 3.85 16 15 C -0.06 -3.22 5.10 84.86 0.43 -2.78 16 16 N -0.94 -57.48 10.63 21.65 0.23 -57.25 16 17 Si 0.96 45.92 29.57 68.60 2.03 47.95 16 18 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 19 H -0.30 -14.57 7.11 99.48 0.71 -13.87 16 20 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 21 H 0.04 1.49 6.66 -2.39 -0.02 1.47 16 22 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 23 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 24 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 25 H 0.04 1.55 7.51 -2.39 -0.02 1.53 16 26 H 0.09 3.11 8.14 -2.39 -0.02 3.09 16 27 H 0.05 2.63 7.75 -2.38 -0.02 2.61 16 28 H 0.20 3.46 8.06 -2.91 -0.02 3.44 16 29 H 0.27 1.78 8.06 -2.91 -0.02 1.76 16 30 H -0.01 -0.35 7.42 -2.39 -0.02 -0.37 16 31 H 0.01 0.72 7.20 -2.39 -0.02 0.70 16 32 H 0.02 1.05 6.43 -2.39 -0.02 1.03 16 33 H 0.24 14.61 8.31 -92.71 -0.77 13.84 16 Total: -1.00 -70.25 277.50 6.66 -63.59 By element: Atomic # 1 Polarization: 2.45 SS G_CDS: 1.08 Total: 3.53 kcal Atomic # 6 Polarization: -17.77 SS G_CDS: 4.71 Total: -13.06 kcal Atomic # 7 Polarization: -103.42 SS G_CDS: -1.96 Total: -105.38 kcal Atomic # 8 Polarization: 2.58 SS G_CDS: 0.80 Total: 3.38 kcal Atomic # 14 Polarization: 45.92 SS G_CDS: 2.03 Total: 47.95 kcal Total: -70.25 6.66 -63.59 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259854307.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.620 kcal (2) G-P(sol) polarization free energy of solvation -70.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.587 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds