Wall clock time and date at job start Mon Mar 30 2020 03:12:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 109.46812 * 2 1 4 4 C 1.52995 * 109.46840 * 119.99392 * 2 1 3 5 5 C 1.53005 * 109.46758 * 184.99965 * 4 2 1 6 6 C 1.50707 * 109.46855 * 180.02562 * 5 4 2 7 7 C 1.41379 * 126.79859 * 125.00059 * 6 5 4 8 8 C 1.35457 * 103.98445 * 179.97438 * 7 6 5 9 9 O 1.34040 * 106.44475 * 0.02562 * 8 7 6 10 10 N 1.20925 * 111.56669 * 359.71251 * 9 8 7 11 11 N 1.46500 * 109.46915 * 239.99826 * 2 1 3 12 12 C 1.46499 * 119.99818 * 299.99231 * 11 2 1 13 13 C 1.36935 * 119.99913 * 120.00335 * 11 2 1 14 14 H 1.08003 * 119.99811 * 339.40456 * 13 11 2 15 15 C 1.38810 * 119.99842 * 159.12874 * 13 11 2 16 16 N 1.31620 * 120.00260 * 348.29388 * 15 13 11 17 17 Si 1.86801 * 119.99740 * 168.29472 * 15 13 11 18 18 H 1.48500 * 109.47207 * 90.00065 * 17 15 13 19 19 H 1.48503 * 109.47257 * 209.99872 * 17 15 13 20 20 H 1.48496 * 109.47507 * 329.99871 * 17 15 13 21 21 H 1.09002 * 109.47042 * 300.00330 * 1 2 3 22 22 H 1.08999 * 109.47518 * 60.00520 * 1 2 3 23 23 H 1.09004 * 109.46938 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.47540 * 305.00228 * 4 2 1 25 25 H 1.09006 * 109.47328 * 65.00557 * 4 2 1 26 26 H 1.09002 * 109.47084 * 299.99966 * 5 4 2 27 27 H 1.08995 * 109.47154 * 60.00832 * 5 4 2 28 28 H 1.08000 * 128.01147 * 0.03882 * 7 6 5 29 29 H 1.07999 * 126.77569 * 179.97438 * 8 7 6 30 30 H 1.08991 * 109.47672 * 264.88462 * 12 11 2 31 31 H 1.08996 * 109.46954 * 24.89123 * 12 11 2 32 32 H 1.09001 * 109.46721 * 144.88686 * 12 11 2 33 33 H 0.96995 * 120.00108 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7211 1.2493 5 6 3.5648 -0.6131 1.3137 6 6 4.0672 -1.3240 2.5440 7 6 5.0356 -2.3530 2.5914 8 6 5.1339 -2.6494 3.9095 9 8 4.2768 -1.8387 4.5457 10 7 3.6993 -1.1086 3.7739 11 7 2.0183 -0.6907 -1.1962 12 6 1.6645 -2.0933 -1.4278 13 6 2.8056 -0.0252 -2.0975 14 1 2.8011 1.0545 -2.1247 15 6 3.6138 -0.7382 -2.9724 16 7 3.8032 -2.0280 -2.7905 17 14 4.4325 0.1328 -4.4078 18 1 5.7627 0.6403 -3.9853 19 1 4.6013 -0.8202 -5.5341 20 1 3.5847 1.2708 -4.8452 21 1 -0.3633 0.5139 0.8900 22 1 -0.3634 0.5137 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 1.6053 -0.2616 2.1370 25 1 1.7517 -1.7714 1.2057 26 1 3.9994 -1.0728 0.4260 27 1 3.8532 0.4371 1.3574 28 1 5.5733 -2.7987 1.7677 29 1 5.7755 -3.3929 4.3589 30 1 2.4605 -2.7358 -1.0516 31 1 0.7348 -2.3241 -0.9078 32 1 1.5348 -2.2635 -2.4966 33 1 4.3682 -2.5261 -3.4016 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259854309.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:00 Heat of formation + Delta-G solvation = 74.419003 kcal Electronic energy + Delta-G solvation = -15623.554919 eV Core-core repulsion = 13074.409808 eV Total energy + Delta-G solvation = -2549.145110 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -44.59545 -36.99034 -34.51394 -32.58909 -31.43883 -29.92586 -28.65010 -25.94881 -24.19347 -22.77568 -22.73958 -20.31711 -18.82782 -17.41572 -17.19838 -16.80858 -15.15677 -14.64162 -14.15241 -13.53133 -13.38496 -13.15681 -12.59484 -12.38799 -12.06489 -11.63426 -11.52630 -11.18929 -10.87315 -10.70781 -10.53622 -10.30813 -10.27197 -10.01187 -9.73018 -9.64299 -9.56650 -9.27202 -8.49750 -6.71031 -5.67114 -3.10783 1.77812 2.61838 3.39392 3.46514 3.48200 3.54582 4.52861 4.63443 4.90495 5.45191 5.47535 5.51268 5.63956 5.68942 5.86899 6.01918 6.10620 6.20881 6.31448 6.43250 6.50456 6.55530 6.64950 6.86748 6.97867 7.08134 7.09486 7.49117 7.78801 7.86536 8.44612 8.60673 9.29983 9.94186 10.43292 11.37163 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.027860 B = 0.008039 C = 0.006883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.777005 B = 3481.968491 C = 4067.215956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.170 3.830 3 H 0.062 0.938 4 C -0.119 4.119 5 C -0.037 4.037 6 C 0.034 3.966 7 C -0.225 4.225 8 C -0.077 4.077 9 O 0.087 5.913 10 N -0.374 5.374 11 N -0.596 5.596 12 C 0.166 3.834 13 C -0.247 4.247 14 H 0.067 0.933 15 C -0.001 4.001 16 N -0.910 5.910 17 Si 0.901 3.099 18 H -0.289 1.289 19 H -0.291 1.291 20 H -0.282 1.282 21 H 0.041 0.959 22 H 0.051 0.949 23 H 0.048 0.952 24 H 0.049 0.951 25 H 0.055 0.945 26 H 0.108 0.892 27 H 0.072 0.928 28 H 0.171 0.829 29 H 0.211 0.789 30 H 0.027 0.973 31 H -0.004 1.004 32 H 0.042 0.958 33 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.783 -1.202 9.926 10.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.062 3.938 3 H 0.080 0.920 4 C -0.159 4.159 5 C -0.075 4.075 6 C -0.124 4.124 7 C -0.246 4.246 8 C -0.158 4.158 9 O 0.022 5.978 10 N -0.080 5.080 11 N -0.319 5.319 12 C 0.021 3.979 13 C -0.377 4.377 14 H 0.085 0.915 15 C -0.198 4.198 16 N -0.556 5.556 17 Si 0.731 3.269 18 H -0.216 1.216 19 H -0.217 1.217 20 H -0.207 1.207 21 H 0.060 0.940 22 H 0.070 0.930 23 H 0.067 0.933 24 H 0.068 0.932 25 H 0.074 0.926 26 H 0.127 0.873 27 H 0.090 0.910 28 H 0.188 0.812 29 H 0.228 0.772 30 H 0.045 0.955 31 H 0.015 0.985 32 H 0.060 0.940 33 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 0.014 -0.488 10.389 10.400 hybrid contribution 1.182 -0.284 -1.408 1.860 sum 1.196 -0.773 8.981 9.093 Atomic orbital electron populations 1.22247 0.98631 1.00957 1.00106 1.20383 0.91642 0.95603 0.86170 0.92003 1.22015 0.93817 1.01281 0.98799 1.20060 0.96906 0.99066 0.91450 1.24114 0.96434 0.97545 0.94334 1.22904 1.02840 1.01130 0.97768 1.25918 0.97831 0.99136 0.92936 1.84798 1.41408 1.37260 1.34304 1.73794 1.17887 1.13894 1.02462 1.43970 1.57792 1.09568 1.20603 1.20726 0.93779 0.84604 0.98785 1.19234 1.16766 0.90767 1.10909 0.91526 1.24935 0.98380 0.96023 1.00493 1.70074 1.41015 1.06640 1.37849 0.86315 0.79405 0.78595 0.82576 1.21611 1.21750 1.20716 0.93968 0.92978 0.93334 0.93190 0.92640 0.87314 0.90969 0.81184 0.77222 0.95503 0.98542 0.93965 0.93953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.90 9.18 37.16 0.34 -2.56 16 2 C 0.17 3.49 2.71 -67.93 -0.18 3.31 16 3 H 0.06 1.28 7.85 -51.93 -0.41 0.87 16 4 C -0.12 -2.27 4.62 -26.73 -0.12 -2.40 16 5 C -0.04 -0.71 5.70 -27.88 -0.16 -0.87 16 6 C 0.03 0.61 6.59 -82.10 -0.54 0.07 16 7 C -0.23 -3.38 11.12 -39.38 -0.44 -3.82 16 8 C -0.08 -0.93 12.30 29.74 0.37 -0.57 16 9 O 0.09 1.29 11.20 17.17 0.19 1.49 16 10 N -0.37 -6.56 12.06 33.42 0.40 -6.16 16 11 N -0.60 -14.55 2.27 -173.49 -0.39 -14.95 16 12 C 0.17 4.06 7.90 59.85 0.47 4.53 16 13 C -0.25 -6.61 9.62 -15.06 -0.14 -6.76 16 14 H 0.07 1.76 7.80 -52.48 -0.41 1.35 16 15 C 0.00 -0.02 5.13 -17.43 -0.09 -0.11 16 16 N -0.91 -25.75 10.51 55.49 0.58 -25.17 16 17 Si 0.90 21.64 29.57 -169.99 -5.03 16.61 16 18 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 19 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 20 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 21 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 22 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 23 H 0.05 0.88 6.67 -51.93 -0.35 0.53 16 24 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 25 H 0.05 1.11 7.51 -51.93 -0.39 0.73 16 26 H 0.11 2.44 7.75 -51.93 -0.40 2.04 16 27 H 0.07 1.37 8.14 -51.93 -0.42 0.94 16 28 H 0.17 2.37 8.06 -52.49 -0.42 1.95 16 29 H 0.21 1.48 8.06 -52.49 -0.42 1.06 16 30 H 0.03 0.70 7.40 -51.93 -0.38 0.32 16 31 H 0.00 -0.09 6.44 -51.93 -0.33 -0.42 16 32 H 0.04 1.12 7.15 -51.93 -0.37 0.75 16 33 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 LS Contribution 277.34 15.07 4.18 4.18 Total: -1.00 -29.45 277.34 -5.28 -34.72 By element: Atomic # 1 Polarization: 3.16 SS G_CDS: -4.72 Total: -1.56 kcal Atomic # 6 Polarization: -8.67 SS G_CDS: -0.50 Total: -9.17 kcal Atomic # 7 Polarization: -46.87 SS G_CDS: 0.59 Total: -46.28 kcal Atomic # 8 Polarization: 1.29 SS G_CDS: 0.19 Total: 1.49 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.03 Total: 16.61 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -29.45 -5.28 -34.72 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259854309.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.144 kcal (2) G-P(sol) polarization free energy of solvation -29.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.725 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds