Wall clock time and date at job start Mon Mar 30 2020 03:11:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 109.46812 * 2 1 4 4 C 1.52995 * 109.46840 * 119.99392 * 2 1 3 5 5 C 1.53005 * 109.46758 * 184.99965 * 4 2 1 6 6 C 1.50707 * 109.46855 * 180.02562 * 5 4 2 7 7 C 1.41379 * 126.79859 * 125.00059 * 6 5 4 8 8 C 1.35457 * 103.98445 * 179.97438 * 7 6 5 9 9 O 1.34040 * 106.44475 * 0.02562 * 8 7 6 10 10 N 1.20925 * 111.56669 * 359.71251 * 9 8 7 11 11 N 1.46500 * 109.46915 * 239.99826 * 2 1 3 12 12 C 1.46499 * 119.99818 * 299.99231 * 11 2 1 13 13 C 1.36935 * 119.99913 * 120.00335 * 11 2 1 14 14 H 1.08003 * 119.99811 * 339.40456 * 13 11 2 15 15 C 1.38810 * 119.99842 * 159.12874 * 13 11 2 16 16 N 1.31620 * 120.00260 * 348.29388 * 15 13 11 17 17 Si 1.86801 * 119.99740 * 168.29472 * 15 13 11 18 18 H 1.48500 * 109.47207 * 90.00065 * 17 15 13 19 19 H 1.48503 * 109.47257 * 209.99872 * 17 15 13 20 20 H 1.48496 * 109.47507 * 329.99871 * 17 15 13 21 21 H 1.09002 * 109.47042 * 300.00330 * 1 2 3 22 22 H 1.08999 * 109.47518 * 60.00520 * 1 2 3 23 23 H 1.09004 * 109.46938 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.47540 * 305.00228 * 4 2 1 25 25 H 1.09006 * 109.47328 * 65.00557 * 4 2 1 26 26 H 1.09002 * 109.47084 * 299.99966 * 5 4 2 27 27 H 1.08995 * 109.47154 * 60.00832 * 5 4 2 28 28 H 1.08000 * 128.01147 * 0.03882 * 7 6 5 29 29 H 1.07999 * 126.77569 * 179.97438 * 8 7 6 30 30 H 1.08991 * 109.47672 * 264.88462 * 12 11 2 31 31 H 1.08996 * 109.46954 * 24.89123 * 12 11 2 32 32 H 1.09001 * 109.46721 * 144.88686 * 12 11 2 33 33 H 0.96995 * 120.00108 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7211 1.2493 5 6 3.5648 -0.6131 1.3137 6 6 4.0672 -1.3240 2.5440 7 6 5.0356 -2.3530 2.5914 8 6 5.1339 -2.6494 3.9095 9 8 4.2768 -1.8387 4.5457 10 7 3.6993 -1.1086 3.7739 11 7 2.0183 -0.6907 -1.1962 12 6 1.6645 -2.0933 -1.4278 13 6 2.8056 -0.0252 -2.0975 14 1 2.8011 1.0545 -2.1247 15 6 3.6138 -0.7382 -2.9724 16 7 3.8032 -2.0280 -2.7905 17 14 4.4325 0.1328 -4.4078 18 1 5.7627 0.6403 -3.9853 19 1 4.6013 -0.8202 -5.5341 20 1 3.5847 1.2708 -4.8452 21 1 -0.3633 0.5139 0.8900 22 1 -0.3634 0.5137 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 1.6053 -0.2616 2.1370 25 1 1.7517 -1.7714 1.2057 26 1 3.9994 -1.0728 0.4260 27 1 3.8532 0.4371 1.3574 28 1 5.5733 -2.7987 1.7677 29 1 5.7755 -3.3929 4.3589 30 1 2.4605 -2.7358 -1.0516 31 1 0.7348 -2.3241 -0.9078 32 1 1.5348 -2.2635 -2.4966 33 1 4.3682 -2.5261 -3.4016 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259854309.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:59 Heat of formation + Delta-G solvation = 57.678682 kcal Electronic energy + Delta-G solvation = -15624.280834 eV Core-core repulsion = 13074.409808 eV Total energy + Delta-G solvation = -2549.871025 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -45.83261 -38.73067 -36.00322 -34.35170 -32.69124 -31.66549 -30.26268 -27.98644 -25.73051 -24.60387 -23.98450 -21.59166 -20.55643 -18.82492 -18.60099 -18.44770 -17.07241 -16.06416 -15.80035 -15.20431 -15.14307 -14.47210 -14.17677 -13.94000 -13.80984 -13.31220 -13.09435 -12.78752 -12.56025 -12.51407 -12.35968 -12.09265 -12.08298 -11.72291 -11.58785 -11.36527 -10.83805 -10.56799 -10.47835 -8.72245 -7.75018 -5.20223 0.68475 1.34695 1.47590 1.49358 1.57550 2.53649 2.54568 3.31055 3.38848 3.64962 3.77179 4.11763 4.32201 4.39166 4.44812 4.58516 4.69577 4.79463 4.83944 4.88081 4.92409 5.05043 5.16744 5.18825 5.32910 5.41258 5.46679 5.58039 5.69463 5.79050 6.39150 7.22828 7.42943 7.95850 8.39982 9.27533 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.027860 B = 0.008039 C = 0.006883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.777005 B = 3481.968491 C = 4067.215956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.163 3.837 3 H 0.059 0.941 4 C -0.105 4.105 5 C -0.026 4.026 6 C 0.007 3.993 7 C -0.254 4.254 8 C -0.037 4.037 9 O 0.092 5.908 10 N -0.394 5.394 11 N -0.606 5.606 12 C 0.184 3.816 13 C -0.253 4.253 14 H 0.068 0.932 15 C -0.051 4.051 16 N -0.935 5.935 17 Si 0.960 3.040 18 H -0.287 1.287 19 H -0.296 1.296 20 H -0.274 1.274 21 H 0.071 0.929 22 H 0.046 0.954 23 H 0.047 0.953 24 H 0.066 0.934 25 H 0.043 0.957 26 H 0.071 0.929 27 H 0.068 0.932 28 H 0.174 0.826 29 H 0.268 0.732 30 H 0.002 0.998 31 H 0.022 0.978 32 H 0.014 0.986 33 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.839 -1.089 11.362 11.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.057 3.943 3 H 0.077 0.923 4 C -0.145 4.145 5 C -0.064 4.064 6 C -0.151 4.151 7 C -0.276 4.276 8 C -0.119 4.119 9 O 0.027 5.973 10 N -0.100 5.100 11 N -0.330 5.330 12 C 0.039 3.961 13 C -0.383 4.383 14 H 0.086 0.914 15 C -0.246 4.246 16 N -0.583 5.583 17 Si 0.790 3.210 18 H -0.214 1.214 19 H -0.223 1.223 20 H -0.200 1.200 21 H 0.090 0.910 22 H 0.065 0.935 23 H 0.066 0.934 24 H 0.084 0.916 25 H 0.062 0.938 26 H 0.089 0.911 27 H 0.087 0.913 28 H 0.191 0.809 29 H 0.283 0.717 30 H 0.021 0.979 31 H 0.040 0.960 32 H 0.033 0.967 33 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 0.043 -0.341 11.837 11.842 hybrid contribution 1.182 -0.335 -1.748 2.137 sum 1.225 -0.676 10.089 10.186 Atomic orbital electron populations 1.22124 0.96224 1.01279 1.01325 1.20603 0.93356 0.95116 0.85255 0.92293 1.21845 0.93715 1.00350 0.98563 1.19752 0.96889 0.98683 0.91093 1.24012 0.98061 0.98955 0.94033 1.23069 1.03376 1.01528 0.99585 1.26802 0.95780 0.97673 0.91598 1.84755 1.41494 1.37162 1.33924 1.73775 1.18914 1.15031 1.02281 1.44130 1.57651 1.09480 1.21725 1.20412 0.94032 0.84612 0.97043 1.19513 1.16541 0.91022 1.11269 0.91417 1.25610 0.99435 0.96719 1.02823 1.70233 1.41825 1.07767 1.38466 0.85371 0.78492 0.77569 0.79593 1.21393 1.22269 1.19962 0.91019 0.93503 0.93401 0.91578 0.93768 0.91067 0.91319 0.80881 0.71651 0.97928 0.95952 0.96732 0.94559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.16 9.18 71.98 0.66 -4.50 16 2 C 0.16 6.61 2.71 44.99 0.12 6.73 16 3 H 0.06 2.41 7.85 -2.39 -0.02 2.39 16 4 C -0.10 -3.97 4.62 30.59 0.14 -3.82 16 5 C -0.03 -1.02 5.70 29.85 0.17 -0.85 16 6 C 0.01 0.25 6.59 43.58 0.29 0.54 16 7 C -0.25 -7.35 11.12 22.40 0.25 -7.10 16 8 C -0.04 -0.79 12.30 67.18 0.83 0.04 16 9 O 0.09 2.51 11.20 71.63 0.80 3.31 16 10 N -0.39 -13.32 12.06 -49.55 -0.60 -13.92 16 11 N -0.61 -29.88 2.27 -702.80 -1.59 -31.48 16 12 C 0.18 9.17 7.90 127.77 1.01 10.18 16 13 C -0.25 -13.69 9.62 84.03 0.81 -12.88 16 14 H 0.07 3.58 7.80 -2.91 -0.02 3.56 16 15 C -0.05 -2.83 5.13 84.86 0.44 -2.39 16 16 N -0.94 -54.33 10.51 21.65 0.23 -54.10 16 17 Si 0.96 44.99 29.57 68.60 2.03 47.02 16 18 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 19 H -0.30 -14.01 7.11 99.48 0.71 -13.31 16 20 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 21 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 22 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 23 H 0.05 1.63 6.67 -2.38 -0.02 1.62 16 24 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 25 H 0.04 1.76 7.51 -2.38 -0.02 1.74 16 26 H 0.07 3.33 7.75 -2.39 -0.02 3.32 16 27 H 0.07 2.66 8.14 -2.39 -0.02 2.64 16 28 H 0.17 4.79 8.06 -2.91 -0.02 4.76 16 29 H 0.27 2.25 8.06 -2.91 -0.02 2.22 16 30 H 0.00 0.13 7.40 -2.39 -0.02 0.12 16 31 H 0.02 0.97 6.44 -2.39 -0.02 0.96 16 32 H 0.01 0.77 7.15 -2.39 -0.02 0.75 16 33 H 0.25 13.94 8.31 -92.71 -0.77 13.17 16 Total: -1.00 -64.28 277.34 6.66 -57.62 By element: Atomic # 1 Polarization: 4.52 SS G_CDS: 1.08 Total: 5.60 kcal Atomic # 6 Polarization: -18.77 SS G_CDS: 4.71 Total: -14.06 kcal Atomic # 7 Polarization: -97.53 SS G_CDS: -1.96 Total: -99.49 kcal Atomic # 8 Polarization: 2.51 SS G_CDS: 0.80 Total: 3.31 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.02 kcal Total: -64.28 6.66 -57.62 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259854309.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.298 kcal (2) G-P(sol) polarization free energy of solvation -64.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.619 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds