Wall clock time and date at job start Mon Mar 30 2020 02:39:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50703 * 109.47125 * 2 1 4 4 N 1.30834 * 125.85786 * 270.19579 * 3 2 1 5 5 N 1.40073 * 108.33885 * 180.23841 * 4 3 2 6 6 C 1.46498 * 126.03569 * 179.71984 * 5 4 3 7 7 C 1.52994 * 109.47000 * 270.02273 * 6 5 4 8 8 C 1.35136 * 107.92644 * 359.73919 * 5 4 3 9 9 O 1.35762 * 126.19364 * 180.02562 * 8 5 4 10 10 C 1.35947 * 107.61298 * 0.02562 * 8 5 4 11 11 C 1.50706 * 126.07845 * 179.97438 * 10 8 5 12 12 C 1.50702 * 109.46975 * 90.02818 * 11 10 8 13 13 H 1.07998 * 120.00221 * 359.97438 * 12 11 10 14 14 C 1.37881 * 119.99982 * 179.97438 * 12 11 10 15 15 N 1.31514 * 119.99617 * 359.97438 * 14 12 11 16 16 Si 1.86793 * 119.99935 * 179.97438 * 14 12 11 17 17 H 1.48497 * 109.47477 * 359.97438 * 16 14 12 18 18 H 1.48501 * 109.47233 * 120.00050 * 16 14 12 19 19 H 1.48506 * 109.46908 * 239.99801 * 16 14 12 20 20 H 1.08998 * 109.47557 * 300.00039 * 1 2 3 21 21 H 1.09002 * 109.46909 * 59.99855 * 1 2 3 22 22 H 1.08997 * 109.47249 * 179.97438 * 1 2 3 23 23 H 1.08993 * 109.47117 * 240.00123 * 2 1 3 24 24 H 1.09002 * 109.47093 * 119.99624 * 2 1 3 25 25 H 1.08998 * 109.47070 * 30.02708 * 6 5 4 26 26 H 1.09000 * 109.47191 * 150.02398 * 6 5 4 27 27 H 1.08998 * 109.47564 * 300.00132 * 7 6 5 28 28 H 1.09005 * 109.47486 * 59.99873 * 7 6 5 29 29 H 1.09005 * 109.47195 * 180.02562 * 7 6 5 30 30 H 0.96703 * 113.99523 * 269.96396 * 9 8 5 31 31 H 1.08994 * 109.46790 * 210.02218 * 11 10 8 32 32 H 1.08997 * 109.47305 * 330.02658 * 11 10 8 33 33 H 0.96998 * 119.99644 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2844 2.1446 -1.0604 5 7 2.7362 3.4016 -0.6387 6 6 3.1334 4.5111 -1.5090 7 6 4.6292 4.4096 -1.8142 8 6 2.7414 3.4100 0.7126 9 8 3.1141 4.4464 1.5064 10 6 2.3058 2.1928 1.1332 11 6 2.1508 1.7522 2.5660 12 6 0.7614 2.0842 3.0461 13 1 0.0609 2.5665 2.3805 14 6 0.3845 1.7723 4.3352 15 7 1.2375 1.1846 5.1456 16 14 -1.3373 2.1845 4.9305 17 1 -2.0967 2.8384 3.8347 18 1 -2.0318 0.9371 5.3388 19 1 -1.2521 3.1064 6.0917 20 1 -0.3634 0.5138 0.8899 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0276 -0.0005 23 1 1.8933 -0.5138 -0.8899 24 1 1.8933 -0.5138 0.8900 25 1 2.5685 4.4629 -2.4400 26 1 2.9282 5.4572 -1.0082 27 1 5.1941 4.4579 -0.8832 28 1 4.8345 3.4635 -2.3150 29 1 4.9249 5.2354 -2.4614 30 1 4.0536 4.4482 1.7355 31 1 2.3114 0.6763 2.6346 32 1 2.8828 2.2691 3.1864 33 1 0.9722 0.9648 6.0523 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259891241.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:33 Heat of formation + Delta-G solvation = 16.204294 kcal Electronic energy + Delta-G solvation = -15647.192624 eV Core-core repulsion = 13095.523134 eV Total energy + Delta-G solvation = -2551.669490 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.74485 -36.65483 -34.89881 -32.95028 -32.30948 -30.15775 -28.51660 -26.37574 -24.06618 -22.99992 -21.73941 -20.21115 -18.83810 -17.27723 -16.34263 -15.85853 -14.70918 -14.52367 -14.26049 -13.95240 -13.36724 -13.06580 -12.64290 -12.57170 -12.17798 -11.99745 -11.42719 -11.35457 -11.22759 -11.10757 -10.88217 -10.71195 -10.54213 -10.32138 -9.70087 -9.41535 -9.28196 -8.43793 -8.29987 -7.35712 -5.91740 -3.92822 2.34151 2.88676 3.35847 3.42334 3.45892 3.53896 4.53535 4.57557 4.84163 5.08988 5.20385 5.36522 5.42973 5.58067 5.66940 5.74437 6.02188 6.02916 6.14378 6.24560 6.38578 6.49486 6.75759 6.84958 6.99762 7.16662 7.41652 7.69341 7.82634 8.04817 8.20437 8.40235 8.51264 9.11230 9.69412 11.17828 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.028811 B = 0.008823 C = 0.007596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.632257 B = 3172.713512 C = 3685.285535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.034 4.034 3 C 0.084 3.916 4 N -0.297 5.297 5 N -0.393 5.393 6 C 0.132 3.868 7 C -0.166 4.166 8 C 0.228 3.772 9 O -0.458 6.458 10 C -0.182 4.182 11 C 0.092 3.908 12 C -0.495 4.495 13 H 0.053 0.947 14 C 0.056 3.944 15 N -0.898 5.898 16 Si 0.888 3.112 17 H -0.274 1.274 18 H -0.284 1.284 19 H -0.285 1.285 20 H 0.076 0.924 21 H 0.045 0.955 22 H 0.053 0.947 23 H 0.064 0.936 24 H 0.086 0.914 25 H 0.087 0.913 26 H 0.087 0.913 27 H 0.056 0.944 28 H 0.063 0.937 29 H 0.071 0.929 30 H 0.383 0.617 31 H 0.028 0.972 32 H 0.021 0.979 33 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.982 3.169 -10.913 12.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.074 4.074 3 C -0.081 4.081 4 N -0.123 5.123 5 N -0.188 5.188 6 C 0.010 3.990 7 C -0.225 4.225 8 C 0.063 3.937 9 O -0.259 6.259 10 C -0.193 4.193 11 C 0.054 3.946 12 C -0.533 4.533 13 H 0.071 0.929 14 C -0.144 4.144 15 N -0.539 5.539 16 Si 0.716 3.284 17 H -0.198 1.198 18 H -0.210 1.210 19 H -0.211 1.211 20 H 0.095 0.905 21 H 0.064 0.936 22 H 0.072 0.928 23 H 0.082 0.918 24 H 0.104 0.896 25 H 0.106 0.894 26 H 0.106 0.894 27 H 0.075 0.925 28 H 0.082 0.918 29 H 0.089 0.911 30 H 0.237 0.763 31 H 0.046 0.954 32 H 0.040 0.960 33 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 4.475 3.504 -12.013 13.290 hybrid contribution -0.351 0.437 1.319 1.433 sum 4.123 3.941 -10.694 12.120 Atomic orbital electron populations 1.21702 0.94474 1.01230 1.02876 1.19844 0.96290 0.88852 1.02387 1.21992 0.98766 0.97033 0.90269 1.77183 1.23176 0.89613 1.22294 1.48848 1.54337 1.11610 1.04004 1.21432 0.95734 0.87083 0.94758 1.22167 0.95405 1.02802 1.02103 1.18502 1.04906 0.89393 0.80939 1.84926 1.30395 1.45305 1.65256 1.20637 1.07897 0.91591 0.99222 1.17597 0.96993 0.96317 0.83716 1.21121 0.97527 1.37955 0.96718 0.92863 1.24966 0.97093 0.95499 0.96811 1.69959 1.34690 1.42460 1.06741 0.86584 0.85010 0.78027 0.78728 1.19832 1.21033 1.21140 0.90545 0.93564 0.92821 0.91760 0.89573 0.89421 0.89442 0.92481 0.91797 0.91057 0.76301 0.95426 0.96041 0.93153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.54 9.89 37.16 0.37 -2.17 16 2 C -0.03 -0.62 6.31 -27.88 -0.18 -0.80 16 3 C 0.08 1.76 6.47 -82.43 -0.53 1.23 16 4 N -0.30 -5.96 12.57 33.66 0.42 -5.54 16 5 N -0.39 -7.27 3.62 -61.49 -0.22 -7.49 16 6 C 0.13 1.76 7.11 -4.05 -0.03 1.73 16 7 C -0.17 -1.79 10.24 37.15 0.38 -1.41 16 8 C 0.23 4.72 7.92 -16.92 -0.13 4.59 16 9 O -0.46 -8.54 13.53 -18.99 -0.26 -8.80 16 10 C -0.18 -4.18 5.31 -104.85 -0.56 -4.74 16 11 C 0.09 2.40 5.24 -29.03 -0.15 2.25 16 12 C -0.49 -14.12 9.07 -34.44 -0.31 -14.43 16 13 H 0.05 1.56 7.74 -52.49 -0.41 1.15 16 14 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 15 N -0.90 -26.72 13.29 55.43 0.74 -25.99 16 16 Si 0.89 22.02 29.54 -169.99 -5.02 17.00 16 17 H -0.27 -6.75 7.11 56.52 0.40 -6.34 16 18 H -0.28 -6.91 7.11 56.52 0.40 -6.50 16 19 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 20 H 0.08 1.57 8.12 -51.93 -0.42 1.14 16 21 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 22 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 23 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 24 H 0.09 1.59 7.25 -51.93 -0.38 1.21 16 25 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 26 H 0.09 1.08 8.14 -51.93 -0.42 0.65 16 27 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.38 5.11 9.06 45.56 0.41 5.52 16 31 H 0.03 0.74 7.25 -51.93 -0.38 0.37 16 32 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 287.87 15.07 4.34 4.34 Total: -1.00 -33.03 287.87 -5.35 -38.38 By element: Atomic # 1 Polarization: 4.43 SS G_CDS: -4.11 Total: 0.33 kcal Atomic # 6 Polarization: -10.99 SS G_CDS: -1.24 Total: -12.23 kcal Atomic # 7 Polarization: -39.95 SS G_CDS: 0.94 Total: -39.01 kcal Atomic # 8 Polarization: -8.54 SS G_CDS: -0.26 Total: -8.80 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -33.03 -5.35 -38.38 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259891241.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.583 kcal (2) G-P(sol) polarization free energy of solvation -33.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.378 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds