Wall clock time and date at job start Mon Mar 30 2020 02:39:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50703 * 109.47125 * 2 1 4 4 N 1.30834 * 125.85786 * 270.19579 * 3 2 1 5 5 N 1.40073 * 108.33885 * 180.23841 * 4 3 2 6 6 C 1.46498 * 126.03569 * 179.71984 * 5 4 3 7 7 C 1.52994 * 109.47000 * 270.02273 * 6 5 4 8 8 C 1.35136 * 107.92644 * 359.73919 * 5 4 3 9 9 O 1.35762 * 126.19364 * 180.02562 * 8 5 4 10 10 C 1.35947 * 107.61298 * 0.02562 * 8 5 4 11 11 C 1.50706 * 126.07845 * 179.97438 * 10 8 5 12 12 C 1.50702 * 109.46975 * 90.02818 * 11 10 8 13 13 H 1.07998 * 120.00221 * 359.97438 * 12 11 10 14 14 C 1.37881 * 119.99982 * 179.97438 * 12 11 10 15 15 N 1.31514 * 119.99617 * 359.97438 * 14 12 11 16 16 Si 1.86793 * 119.99935 * 179.97438 * 14 12 11 17 17 H 1.48497 * 109.47477 * 359.97438 * 16 14 12 18 18 H 1.48501 * 109.47233 * 120.00050 * 16 14 12 19 19 H 1.48506 * 109.46908 * 239.99801 * 16 14 12 20 20 H 1.08998 * 109.47557 * 300.00039 * 1 2 3 21 21 H 1.09002 * 109.46909 * 59.99855 * 1 2 3 22 22 H 1.08997 * 109.47249 * 179.97438 * 1 2 3 23 23 H 1.08993 * 109.47117 * 240.00123 * 2 1 3 24 24 H 1.09002 * 109.47093 * 119.99624 * 2 1 3 25 25 H 1.08998 * 109.47070 * 30.02708 * 6 5 4 26 26 H 1.09000 * 109.47191 * 150.02398 * 6 5 4 27 27 H 1.08998 * 109.47564 * 300.00132 * 7 6 5 28 28 H 1.09005 * 109.47486 * 59.99873 * 7 6 5 29 29 H 1.09005 * 109.47195 * 180.02562 * 7 6 5 30 30 H 0.96703 * 113.99523 * 269.96396 * 9 8 5 31 31 H 1.08994 * 109.46790 * 210.02218 * 11 10 8 32 32 H 1.08997 * 109.47305 * 330.02658 * 11 10 8 33 33 H 0.96998 * 119.99644 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2844 2.1446 -1.0604 5 7 2.7362 3.4016 -0.6387 6 6 3.1334 4.5111 -1.5090 7 6 4.6292 4.4096 -1.8142 8 6 2.7414 3.4100 0.7126 9 8 3.1141 4.4464 1.5064 10 6 2.3058 2.1928 1.1332 11 6 2.1508 1.7522 2.5660 12 6 0.7614 2.0842 3.0461 13 1 0.0609 2.5665 2.3805 14 6 0.3845 1.7723 4.3352 15 7 1.2375 1.1846 5.1456 16 14 -1.3373 2.1845 4.9305 17 1 -2.0967 2.8384 3.8347 18 1 -2.0318 0.9371 5.3388 19 1 -1.2521 3.1064 6.0917 20 1 -0.3634 0.5138 0.8899 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0276 -0.0005 23 1 1.8933 -0.5138 -0.8899 24 1 1.8933 -0.5138 0.8900 25 1 2.5685 4.4629 -2.4400 26 1 2.9282 5.4572 -1.0082 27 1 5.1941 4.4579 -0.8832 28 1 4.8345 3.4635 -2.3150 29 1 4.9249 5.2354 -2.4614 30 1 4.0536 4.4482 1.7355 31 1 2.3114 0.6763 2.6346 32 1 2.8828 2.2691 3.1864 33 1 0.9722 0.9648 6.0523 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259891241.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:33 Heat of formation + Delta-G solvation = -7.331709 kcal Electronic energy + Delta-G solvation = -15648.213222 eV Core-core repulsion = 13095.523134 eV Total energy + Delta-G solvation = -2552.690087 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.29550 -38.16950 -36.33479 -34.97929 -33.60881 -32.03577 -29.88029 -28.23825 -25.43623 -24.87310 -23.09949 -21.79995 -20.40718 -18.74780 -18.42430 -17.43617 -16.51808 -16.21688 -15.52630 -15.27673 -14.69325 -14.53063 -14.34827 -14.20096 -13.75873 -13.33329 -13.20899 -12.94596 -12.67683 -12.60870 -12.42381 -12.31671 -12.25315 -11.84548 -11.55384 -11.45332 -11.07757 -10.50513 -9.92056 -9.06500 -8.10064 -6.20565 0.80295 1.39722 1.40468 1.49257 1.53204 1.84432 2.46845 3.16879 3.19384 3.62330 4.02211 4.11928 4.24319 4.35723 4.57738 4.58783 4.64074 4.73756 4.82887 4.90147 5.08483 5.13701 5.17204 5.32159 5.42868 5.51726 5.71952 5.78423 5.85100 5.93795 6.32870 6.76840 6.85011 6.89294 7.45725 8.97897 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.028811 B = 0.008823 C = 0.007596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.632257 B = 3172.713512 C = 3685.285535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.035 4.035 3 C 0.077 3.923 4 N -0.301 5.301 5 N -0.383 5.383 6 C 0.119 3.881 7 C -0.157 4.157 8 C 0.239 3.761 9 O -0.466 6.466 10 C -0.230 4.230 11 C 0.108 3.892 12 C -0.507 4.507 13 H 0.040 0.960 14 C 0.008 3.992 15 N -0.930 5.930 16 Si 0.953 3.047 17 H -0.272 1.272 18 H -0.273 1.273 19 H -0.278 1.278 20 H 0.038 0.962 21 H 0.052 0.948 22 H 0.081 0.919 23 H 0.092 0.908 24 H 0.074 0.926 25 H 0.102 0.898 26 H 0.101 0.899 27 H 0.054 0.946 28 H 0.052 0.948 29 H 0.105 0.895 30 H 0.407 0.593 31 H 0.008 0.992 32 H -0.003 1.003 33 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.743 4.012 -12.234 13.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.075 4.075 3 C -0.087 4.087 4 N -0.128 5.128 5 N -0.178 5.178 6 C -0.001 4.001 7 C -0.215 4.215 8 C 0.071 3.929 9 O -0.271 6.271 10 C -0.241 4.241 11 C 0.070 3.930 12 C -0.545 4.545 13 H 0.058 0.942 14 C -0.189 4.189 15 N -0.571 5.571 16 Si 0.778 3.222 17 H -0.197 1.197 18 H -0.198 1.198 19 H -0.204 1.204 20 H 0.058 0.942 21 H 0.071 0.929 22 H 0.100 0.900 23 H 0.111 0.889 24 H 0.093 0.907 25 H 0.120 0.880 26 H 0.119 0.881 27 H 0.073 0.927 28 H 0.071 0.929 29 H 0.124 0.876 30 H 0.265 0.735 31 H 0.026 0.974 32 H 0.015 0.985 33 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 4.261 4.360 -13.360 14.685 hybrid contribution -0.198 0.271 1.680 1.713 sum 4.064 4.631 -11.680 13.205 Atomic orbital electron populations 1.21626 0.94055 1.02593 1.01248 1.19930 0.96582 0.87769 1.03169 1.22259 0.98732 0.98062 0.89642 1.77134 1.23432 0.90304 1.21898 1.49221 1.52741 1.12062 1.03743 1.21938 0.97736 0.85812 0.94593 1.22111 0.93187 1.03647 1.02588 1.18451 1.03539 0.88811 0.82106 1.84841 1.32687 1.44424 1.65107 1.20438 1.11769 0.93781 0.98133 1.17212 0.95235 0.94692 0.85826 1.21308 0.98420 1.37909 0.96892 0.94216 1.25746 1.01018 0.95259 0.96893 1.70062 1.36603 1.43226 1.07173 0.85582 0.80275 0.78199 0.78127 1.19706 1.19849 1.20421 0.94230 0.92923 0.89996 0.88924 0.90711 0.88018 0.88106 0.92672 0.92878 0.87614 0.73481 0.97396 0.98523 0.92783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.75 9.89 71.98 0.71 -4.03 16 2 C -0.04 -1.27 6.31 29.85 0.19 -1.08 16 3 C 0.08 3.24 6.47 43.09 0.28 3.52 16 4 N -0.30 -11.77 12.57 -47.42 -0.60 -12.36 16 5 N -0.38 -13.61 3.62 -459.76 -1.66 -15.27 16 6 C 0.12 2.85 7.11 86.38 0.61 3.47 16 7 C -0.16 -2.92 10.24 71.98 0.74 -2.18 16 8 C 0.24 9.79 7.92 83.65 0.66 10.45 16 9 O -0.47 -17.01 13.53 -90.88 -1.23 -18.24 16 10 C -0.23 -10.74 5.31 -20.01 -0.11 -10.85 16 11 C 0.11 5.91 5.24 29.10 0.15 6.06 16 12 C -0.51 -29.73 9.07 25.60 0.23 -29.49 16 13 H 0.04 2.38 7.74 -2.91 -0.02 2.36 16 14 C 0.01 0.48 5.46 84.66 0.46 0.95 16 15 N -0.93 -56.27 13.29 21.45 0.28 -55.99 16 16 Si 0.95 45.50 29.54 68.60 2.03 47.53 16 17 H -0.27 -12.85 7.11 99.48 0.71 -12.14 16 18 H -0.27 -12.49 7.11 99.48 0.71 -11.79 16 19 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 20 H 0.04 1.64 8.12 -2.39 -0.02 1.62 16 21 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 22 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 23 H 0.09 2.76 8.14 -2.39 -0.02 2.74 16 24 H 0.07 2.82 7.25 -2.39 -0.02 2.81 16 25 H 0.10 2.19 8.14 -2.39 -0.02 2.17 16 26 H 0.10 2.18 8.14 -2.39 -0.02 2.16 16 27 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 28 H 0.05 1.12 8.14 -2.38 -0.02 1.10 16 29 H 0.11 1.27 8.14 -2.38 -0.02 1.25 16 30 H 0.41 10.41 9.06 -74.05 -0.67 9.74 16 31 H 0.01 0.45 7.25 -2.39 -0.02 0.43 16 32 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 16 33 H 0.26 14.93 8.31 -92.71 -0.77 14.16 16 Total: -1.00 -71.53 287.87 3.18 -68.35 By element: Atomic # 1 Polarization: 8.76 SS G_CDS: 0.43 Total: 9.19 kcal Atomic # 6 Polarization: -27.13 SS G_CDS: 3.93 Total: -23.19 kcal Atomic # 7 Polarization: -81.65 SS G_CDS: -1.97 Total: -83.62 kcal Atomic # 8 Polarization: -17.01 SS G_CDS: -1.23 Total: -18.24 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 2.03 Total: 47.53 kcal Total: -71.53 3.18 -68.35 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259891241.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.014 kcal (2) G-P(sol) polarization free energy of solvation -71.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds