Wall clock time and date at job start Mon Mar 30 2020 02:40:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35759 * 116.99819 * 2 1 4 4 N 1.35132 * 126.19154 * 0.02562 * 3 2 1 5 5 H 0.96992 * 126.04045 * 359.96205 * 4 3 2 6 6 N 1.40074 * 107.92504 * 179.97438 * 4 3 2 7 7 C 1.30836 * 108.33902 * 359.74323 * 6 4 3 8 8 C 1.50700 * 125.85597 * 180.23230 * 7 6 4 9 9 C 1.53000 * 109.47515 * 300.19727 * 8 7 6 10 10 C 1.53005 * 109.47142 * 60.20234 * 8 7 6 11 11 C 1.35946 * 126.19024 * 180.02562 * 3 2 1 12 12 C 1.50699 * 126.08451 * 359.97438 * 11 3 2 13 13 C 1.50706 * 109.46817 * 90.02623 * 12 11 3 14 14 H 1.07995 * 120.00167 * 359.72198 * 13 12 11 15 15 C 1.37879 * 119.99394 * 179.97438 * 13 12 11 16 16 N 1.31514 * 120.00338 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99424 * 180.02562 * 15 13 12 18 18 H 1.48490 * 109.47405 * 60.00219 * 17 15 13 19 19 H 1.48503 * 109.46845 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.47399 * 299.99813 * 17 15 13 21 21 H 1.08999 * 109.47317 * 299.99858 * 1 2 3 22 22 H 1.09001 * 109.47530 * 60.00042 * 1 2 3 23 23 H 1.09003 * 109.46959 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.46808 * 180.19603 * 8 7 6 25 25 H 1.09006 * 109.46762 * 60.00376 * 9 8 7 26 26 H 1.08998 * 109.47240 * 179.97438 * 9 8 7 27 27 H 1.09001 * 109.47223 * 300.00367 * 9 8 7 28 28 H 1.08999 * 109.47169 * 180.02562 * 10 8 7 29 29 H 1.09003 * 109.46497 * 299.99889 * 10 8 7 30 30 H 1.09000 * 109.46990 * 59.99723 * 10 8 7 31 31 H 1.09000 * 109.47247 * 330.02686 * 12 11 3 32 32 H 1.09001 * 109.47358 * 210.02112 * 12 11 3 33 33 H 0.96996 * 119.99730 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2096 0.0000 4 7 1.4358 2.4157 0.0005 5 1 0.4784 2.5713 0.0004 6 7 2.4308 3.4016 0.0009 7 6 3.5974 2.8091 0.0062 8 6 4.9375 3.4984 0.0135 9 6 5.0654 4.3779 -1.2319 10 6 5.0569 4.3681 1.2666 11 6 3.3873 1.4268 -0.0005 12 6 4.4580 0.3664 -0.0006 13 6 4.8149 0.0130 -1.4215 14 1 4.3131 0.5037 -2.2423 15 6 5.7784 -0.9405 -1.6735 16 7 6.3857 -1.5419 -0.6739 17 14 6.2213 -1.3779 -3.4347 18 1 6.7225 -0.1678 -4.1343 19 1 7.2763 -2.4230 -3.4348 20 1 5.0167 -1.8913 -4.1352 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 5.7306 2.7507 0.0133 25 1 4.2723 5.1257 -1.2316 26 1 6.0345 4.8768 -1.2264 27 1 4.9804 3.7584 -2.1246 28 1 6.0260 4.8670 1.2717 29 1 4.2637 5.1158 1.2668 30 1 4.9657 3.7414 2.1538 31 1 4.0899 -0.5217 0.5132 32 1 5.3425 0.7430 0.5132 33 1 7.0632 -2.2130 -0.8513 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259918705.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:41 Heat of formation + Delta-G solvation = 18.914636 kcal Electronic energy + Delta-G solvation = -15665.738149 eV Core-core repulsion = 13114.186189 eV Total energy + Delta-G solvation = -2551.551960 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.85195 -37.79044 -34.85641 -33.18709 -30.86512 -29.37633 -27.55955 -26.64857 -25.92298 -22.76380 -22.59682 -19.81162 -18.45425 -17.90037 -16.20701 -15.58612 -15.27839 -14.61376 -14.25959 -14.02816 -13.73643 -13.35888 -12.51271 -12.36244 -12.04735 -11.74631 -11.61635 -11.27041 -11.05747 -10.94248 -10.73458 -10.64372 -10.60995 -10.14936 -9.90112 -9.42073 -9.25238 -8.50794 -8.24260 -7.17147 -5.85647 -3.87401 2.54304 3.16686 3.40900 3.44426 3.46596 3.60643 3.66565 4.58299 5.01720 5.14186 5.15518 5.44983 5.47586 5.50409 5.72462 5.82153 6.07875 6.09920 6.24454 6.28473 6.43797 6.51986 6.77202 6.77507 6.88791 6.99992 7.51128 7.77353 7.92696 8.10830 8.17364 8.38438 8.57325 9.16442 9.74395 11.23483 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.019199 B = 0.011101 C = 0.008053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1458.046566 B = 2521.743583 C = 3476.131056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.280 6.280 3 C 0.246 3.754 4 N -0.520 5.520 5 H 0.424 0.576 6 N -0.305 5.305 7 C 0.111 3.889 8 C -0.015 4.015 9 C -0.137 4.137 10 C -0.138 4.138 11 C -0.196 4.196 12 C 0.093 3.907 13 C -0.498 4.498 14 H 0.051 0.949 15 C 0.057 3.943 16 N -0.897 5.897 17 Si 0.888 3.112 18 H -0.277 1.277 19 H -0.288 1.288 20 H -0.279 1.279 21 H 0.048 0.952 22 H 0.049 0.951 23 H 0.104 0.896 24 H 0.101 0.899 25 H 0.052 0.948 26 H 0.055 0.945 27 H 0.059 0.941 28 H 0.056 0.944 29 H 0.054 0.946 30 H 0.053 0.947 31 H 0.024 0.976 32 H 0.027 0.973 33 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.197 7.632 2.145 11.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.186 6.186 3 C 0.080 3.920 4 N -0.241 5.241 5 H 0.267 0.733 6 N -0.132 5.132 7 C -0.054 4.054 8 C -0.036 4.036 9 C -0.195 4.195 10 C -0.196 4.196 11 C -0.207 4.207 12 C 0.055 3.945 13 C -0.537 4.537 14 H 0.069 0.931 15 C -0.143 4.143 16 N -0.537 5.537 17 Si 0.716 3.284 18 H -0.203 1.203 19 H -0.214 1.214 20 H -0.205 1.205 21 H 0.066 0.934 22 H 0.067 0.933 23 H 0.123 0.877 24 H 0.120 0.880 25 H 0.071 0.929 26 H 0.074 0.926 27 H 0.078 0.922 28 H 0.075 0.925 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.043 0.957 32 H 0.045 0.955 33 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -8.570 8.246 2.180 12.091 hybrid contribution -0.382 -1.062 -1.066 1.553 sum -8.952 7.183 1.114 11.532 Atomic orbital electron populations 1.22987 0.79691 1.04525 1.00383 1.86431 1.19818 1.22324 1.89979 1.19391 0.91545 0.78347 1.02749 1.46371 1.08509 1.03431 1.65744 0.73309 1.77133 0.95706 1.10869 1.29526 1.21854 0.93841 0.91971 0.97775 1.19598 0.91466 0.97091 0.95427 1.21748 1.00946 0.99153 0.97647 1.21792 1.01222 0.99360 0.97272 1.19902 0.91172 0.95440 1.14193 1.17552 0.89823 0.90114 0.96961 1.21102 1.19796 1.20750 0.92044 0.93092 1.24966 0.96438 0.96284 0.96648 1.69945 1.26478 1.26918 1.30409 0.86718 0.77949 0.78056 0.85630 1.20288 1.21397 1.20509 0.93370 0.93254 0.87749 0.88044 0.92890 0.92639 0.92226 0.92534 0.92713 0.92755 0.95732 0.95495 0.93090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 10.31 101.05 1.04 1.29 16 2 O -0.28 -5.45 10.52 -18.99 -0.20 -5.65 16 3 C 0.25 5.10 7.76 -16.92 -0.13 4.97 16 4 N -0.52 -9.14 7.12 30.36 0.22 -8.93 16 5 H 0.42 5.67 8.30 -182.63 -1.52 4.15 16 6 N -0.30 -5.91 12.69 33.66 0.43 -5.48 16 7 C 0.11 2.31 5.72 -82.42 -0.47 1.83 16 8 C -0.02 -0.28 3.30 -91.77 -0.30 -0.58 16 9 C -0.14 -2.22 9.18 37.16 0.34 -1.88 16 10 C -0.14 -2.09 9.18 37.16 0.34 -1.75 16 11 C -0.20 -4.58 5.31 -104.85 -0.56 -5.14 16 12 C 0.09 2.52 5.10 -29.03 -0.15 2.37 16 13 C -0.50 -14.40 9.09 -34.44 -0.31 -14.71 16 14 H 0.05 1.48 7.74 -52.49 -0.41 1.08 16 15 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 16 N -0.90 -27.03 13.29 55.43 0.74 -26.29 16 17 Si 0.89 22.08 29.54 -169.99 -5.02 17.06 16 18 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 19 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 20 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 21 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 22 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 23 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 24 H 0.10 2.02 6.89 -51.93 -0.36 1.66 16 25 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 26 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 28 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.02 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.03 0.74 7.22 -51.93 -0.37 0.37 16 33 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 284.77 15.07 4.29 4.29 Total: -1.00 -32.74 284.77 -5.86 -38.61 By element: Atomic # 1 Polarization: 4.45 SS G_CDS: -6.02 Total: -1.57 kcal Atomic # 6 Polarization: -11.74 SS G_CDS: -0.30 Total: -12.04 kcal Atomic # 7 Polarization: -42.08 SS G_CDS: 1.38 Total: -40.70 kcal Atomic # 8 Polarization: -5.45 SS G_CDS: -0.20 Total: -5.65 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -32.74 -5.86 -38.61 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259918705.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.524 kcal (2) G-P(sol) polarization free energy of solvation -32.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.609 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds