Wall clock time and date at job start Mon Mar 30 2020 02:40:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35759 * 116.99819 * 2 1 4 4 N 1.35132 * 126.19154 * 0.02562 * 3 2 1 5 5 H 0.96992 * 126.04045 * 359.96205 * 4 3 2 6 6 N 1.40074 * 107.92504 * 179.97438 * 4 3 2 7 7 C 1.30836 * 108.33902 * 359.74323 * 6 4 3 8 8 C 1.50700 * 125.85597 * 180.23230 * 7 6 4 9 9 C 1.53000 * 109.47515 * 300.19727 * 8 7 6 10 10 C 1.53005 * 109.47142 * 60.20234 * 8 7 6 11 11 C 1.35946 * 126.19024 * 180.02562 * 3 2 1 12 12 C 1.50699 * 126.08451 * 359.97438 * 11 3 2 13 13 C 1.50706 * 109.46817 * 90.02623 * 12 11 3 14 14 H 1.07995 * 120.00167 * 359.72198 * 13 12 11 15 15 C 1.37879 * 119.99394 * 179.97438 * 13 12 11 16 16 N 1.31514 * 120.00338 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99424 * 180.02562 * 15 13 12 18 18 H 1.48490 * 109.47405 * 60.00219 * 17 15 13 19 19 H 1.48503 * 109.46845 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.47399 * 299.99813 * 17 15 13 21 21 H 1.08999 * 109.47317 * 299.99858 * 1 2 3 22 22 H 1.09001 * 109.47530 * 60.00042 * 1 2 3 23 23 H 1.09003 * 109.46959 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.46808 * 180.19603 * 8 7 6 25 25 H 1.09006 * 109.46762 * 60.00376 * 9 8 7 26 26 H 1.08998 * 109.47240 * 179.97438 * 9 8 7 27 27 H 1.09001 * 109.47223 * 300.00367 * 9 8 7 28 28 H 1.08999 * 109.47169 * 180.02562 * 10 8 7 29 29 H 1.09003 * 109.46497 * 299.99889 * 10 8 7 30 30 H 1.09000 * 109.46990 * 59.99723 * 10 8 7 31 31 H 1.09000 * 109.47247 * 330.02686 * 12 11 3 32 32 H 1.09001 * 109.47358 * 210.02112 * 12 11 3 33 33 H 0.96996 * 119.99730 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2096 0.0000 4 7 1.4358 2.4157 0.0005 5 1 0.4784 2.5713 0.0004 6 7 2.4308 3.4016 0.0009 7 6 3.5974 2.8091 0.0062 8 6 4.9375 3.4984 0.0135 9 6 5.0654 4.3779 -1.2319 10 6 5.0569 4.3681 1.2666 11 6 3.3873 1.4268 -0.0005 12 6 4.4580 0.3664 -0.0006 13 6 4.8149 0.0130 -1.4215 14 1 4.3131 0.5037 -2.2423 15 6 5.7784 -0.9405 -1.6735 16 7 6.3857 -1.5419 -0.6739 17 14 6.2213 -1.3779 -3.4347 18 1 6.7225 -0.1678 -4.1343 19 1 7.2763 -2.4230 -3.4348 20 1 5.0167 -1.8913 -4.1352 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 5.7306 2.7507 0.0133 25 1 4.2723 5.1257 -1.2316 26 1 6.0345 4.8768 -1.2264 27 1 4.9804 3.7584 -2.1246 28 1 6.0260 4.8670 1.2717 29 1 4.2637 5.1158 1.2668 30 1 4.9657 3.7414 2.1538 31 1 4.0899 -0.5217 0.5132 32 1 5.3425 0.7430 0.5132 33 1 7.0632 -2.2130 -0.8513 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259918705.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:41 Heat of formation + Delta-G solvation = -4.339512 kcal Electronic energy + Delta-G solvation = -15666.746525 eV Core-core repulsion = 13114.186189 eV Total energy + Delta-G solvation = -2552.560336 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.41109 -39.22985 -36.27799 -35.29350 -32.74170 -30.90110 -29.07990 -27.89462 -27.55554 -24.80023 -24.04166 -21.38617 -19.94445 -19.43993 -18.39075 -17.03495 -16.76258 -16.53950 -15.75475 -15.43203 -15.13632 -14.73914 -14.28282 -13.91788 -13.76480 -13.36464 -12.99391 -12.91889 -12.63399 -12.54439 -12.29796 -12.26935 -11.96280 -11.78183 -11.70732 -11.50303 -11.11125 -10.48642 -10.01287 -8.89915 -8.06107 -6.18946 0.97290 1.41423 1.44610 1.52265 1.70674 1.92305 2.38507 2.48901 3.21311 3.62246 4.06181 4.13156 4.22977 4.40140 4.41530 4.54836 4.60970 4.78217 4.91494 5.05244 5.06797 5.12621 5.20512 5.39598 5.47121 5.49356 5.55164 5.75654 5.86778 5.98902 6.35856 6.74009 6.81579 6.91296 7.47482 9.00838 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.019199 B = 0.011101 C = 0.008053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1458.046566 B = 2521.743583 C = 3476.131056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.007 3.993 2 O -0.311 6.311 3 C 0.262 3.738 4 N -0.497 5.497 5 H 0.446 0.554 6 N -0.300 5.300 7 C 0.109 3.891 8 C -0.022 4.022 9 C -0.129 4.129 10 C -0.129 4.129 11 C -0.251 4.251 12 C 0.111 3.889 13 C -0.513 4.513 14 H 0.044 0.956 15 C 0.006 3.994 16 N -0.931 5.931 17 Si 0.956 3.044 18 H -0.267 1.267 19 H -0.280 1.280 20 H -0.274 1.274 21 H 0.073 0.927 22 H 0.067 0.933 23 H 0.126 0.874 24 H 0.072 0.928 25 H 0.063 0.937 26 H 0.081 0.919 27 H 0.036 0.964 28 H 0.081 0.919 29 H 0.063 0.937 30 H 0.044 0.956 31 H -0.011 1.011 32 H 0.005 0.995 33 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.305 8.793 1.269 12.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 O -0.217 6.217 3 C 0.093 3.907 4 N -0.221 5.221 5 H 0.293 0.707 6 N -0.128 5.128 7 C -0.056 4.056 8 C -0.042 4.042 9 C -0.187 4.187 10 C -0.187 4.187 11 C -0.263 4.263 12 C 0.073 3.927 13 C -0.552 4.552 14 H 0.062 0.938 15 C -0.192 4.192 16 N -0.571 5.571 17 Si 0.781 3.219 18 H -0.191 1.191 19 H -0.205 1.205 20 H -0.199 1.199 21 H 0.091 0.909 22 H 0.086 0.914 23 H 0.144 0.856 24 H 0.091 0.909 25 H 0.082 0.918 26 H 0.100 0.900 27 H 0.056 0.944 28 H 0.100 0.900 29 H 0.082 0.918 30 H 0.063 0.937 31 H 0.007 0.993 32 H 0.024 0.976 33 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -9.728 9.421 1.306 13.605 hybrid contribution -0.166 -1.473 -0.743 1.658 sum -9.894 7.948 0.564 12.704 Atomic orbital electron populations 1.23456 0.75981 1.06795 1.02489 1.86404 1.23770 1.21924 1.89615 1.19251 0.91271 0.79519 1.00636 1.46262 1.09410 1.02056 1.64323 0.70743 1.77079 0.95362 1.10903 1.29466 1.22106 0.95210 0.91027 0.97280 1.19693 0.89425 0.97124 0.97986 1.21696 1.02888 0.98628 0.95498 1.21726 1.03030 0.98812 0.95116 1.19704 0.91819 0.95963 1.18764 1.17139 0.90220 0.89875 0.95492 1.21340 1.20083 1.21038 0.92718 0.93815 1.25826 0.96159 0.96003 1.01191 1.70073 1.26943 1.27387 1.32746 0.85637 0.77891 0.78193 0.80147 1.19147 1.20515 1.19898 0.90869 0.91405 0.85618 0.90940 0.91815 0.90009 0.94444 0.89978 0.91820 0.93657 0.99284 0.97650 0.92819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.16 10.31 113.37 1.17 1.33 16 2 O -0.31 -11.99 10.52 -90.85 -0.96 -12.95 16 3 C 0.26 10.79 7.76 83.65 0.65 11.44 16 4 N -0.50 -16.59 7.12 -169.18 -1.20 -17.80 16 5 H 0.45 10.59 8.30 -213.35 -1.77 8.82 16 6 N -0.30 -11.23 12.69 -47.42 -0.60 -11.83 16 7 C 0.11 4.55 5.72 43.09 0.25 4.80 16 8 C -0.02 -0.79 3.30 -11.54 -0.04 -0.83 16 9 C -0.13 -4.05 9.18 71.98 0.66 -3.39 16 10 C -0.13 -3.73 9.18 71.98 0.66 -3.07 16 11 C -0.25 -12.06 5.31 -20.01 -0.11 -12.17 16 12 C 0.11 6.30 5.10 29.10 0.15 6.45 16 13 C -0.51 -30.65 9.09 25.60 0.23 -30.42 16 14 H 0.04 2.61 7.74 -2.91 -0.02 2.59 16 15 C 0.01 0.33 5.46 84.66 0.46 0.79 16 16 N -0.93 -57.54 13.29 21.45 0.28 -57.26 16 17 Si 0.96 45.63 29.54 68.60 2.03 47.65 16 18 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 19 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 20 H -0.27 -12.73 7.11 99.48 0.71 -12.03 16 21 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 22 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 23 H 0.13 2.29 8.14 -2.39 -0.02 2.27 16 24 H 0.07 3.02 6.89 -2.39 -0.02 3.01 16 25 H 0.06 1.84 8.14 -2.38 -0.02 1.82 16 26 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 27 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 28 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 29 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 30 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 31 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16 32 H 0.01 0.31 7.22 -2.39 -0.02 0.30 16 33 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 Total: -1.00 -72.44 284.77 2.96 -69.47 By element: Atomic # 1 Polarization: 8.44 SS G_CDS: -0.67 Total: 7.77 kcal Atomic # 6 Polarization: -29.14 SS G_CDS: 4.08 Total: -25.06 kcal Atomic # 7 Polarization: -85.36 SS G_CDS: -1.52 Total: -86.88 kcal Atomic # 8 Polarization: -11.99 SS G_CDS: -0.96 Total: -12.95 kcal Atomic # 14 Polarization: 45.63 SS G_CDS: 2.03 Total: 47.65 kcal Total: -72.44 2.96 -69.47 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259918705.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.134 kcal (2) G-P(sol) polarization free energy of solvation -72.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds