Wall clock time and date at job start Mon Mar 30 2020 02:42:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35285 * 116.99623 * 2 1 4 4 N 1.34916 * 126.52468 * 359.97438 * 3 2 1 5 5 H 0.97007 * 125.68594 * 359.97438 * 4 3 2 6 6 N 1.39854 * 108.62921 * 179.77266 * 4 3 2 7 7 C 1.30263 * 109.46569 * 0.42771 * 6 4 3 8 8 C 1.50696 * 125.90680 * 179.84224 * 7 6 4 9 9 C 1.53000 * 109.47400 * 239.69022 * 8 7 6 10 10 C 1.53007 * 109.47084 * 119.68971 * 8 7 6 11 11 C 1.53002 * 109.47395 * 359.69357 * 8 7 6 12 12 C 1.40259 * 126.51885 * 179.97438 * 3 2 1 13 13 C 1.41286 * 126.61729 * 0.02562 * 12 3 2 14 14 H 1.08001 * 119.99783 * 150.95387 * 13 12 3 15 15 C 1.39599 * 120.00255 * 330.95060 * 13 12 3 16 16 N 1.31149 * 119.99722 * 341.26927 * 15 13 12 17 17 Si 1.86801 * 119.99933 * 161.26220 * 15 13 12 18 18 H 1.48511 * 109.46901 * 90.00203 * 17 15 13 19 19 H 1.48496 * 109.47329 * 210.00186 * 17 15 13 20 20 H 1.48498 * 109.47259 * 330.00750 * 17 15 13 21 21 H 1.08998 * 109.47022 * 179.97438 * 1 2 3 22 22 H 1.08993 * 109.46888 * 299.99748 * 1 2 3 23 23 H 1.08997 * 109.47115 * 59.99672 * 1 2 3 24 24 H 1.08998 * 109.47039 * 300.00212 * 9 8 7 25 25 H 1.08996 * 109.47254 * 179.97438 * 9 8 7 26 26 H 1.09004 * 109.46856 * 60.00304 * 9 8 7 27 27 H 1.09004 * 109.47065 * 179.97438 * 10 8 7 28 28 H 1.08990 * 109.47315 * 300.00354 * 10 8 7 29 29 H 1.08998 * 109.46599 * 60.00710 * 10 8 7 30 30 H 1.09003 * 109.46574 * 299.99905 * 11 8 7 31 31 H 1.09003 * 109.46659 * 59.99697 * 11 8 7 32 32 H 1.08996 * 109.47563 * 179.97438 * 11 8 7 33 33 H 0.97005 * 119.99818 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0431 1.2054 0.0000 4 7 1.4416 2.4131 -0.0005 5 1 0.4840 2.5683 -0.0013 6 7 2.4286 3.4038 0.0050 7 6 3.6051 2.8446 -0.0004 8 6 4.9273 3.5676 -0.0006 9 6 5.7209 3.1789 -1.2496 10 6 5.7207 3.1799 1.2489 11 6 4.6828 5.0779 -0.0012 12 6 3.4264 1.4375 0.0005 13 6 4.4451 0.4585 0.0006 14 1 5.4012 0.6741 -0.4532 15 6 4.2160 -0.7873 0.5872 16 7 3.2334 -0.9385 1.4426 17 14 5.3087 -2.2390 0.1537 18 1 6.4611 -2.2879 1.0892 19 1 4.5276 -3.4971 0.2645 20 1 5.8063 -2.0861 -1.2370 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8899 24 1 5.8951 2.1030 -1.2492 25 1 6.6771 3.7022 -1.2500 26 1 5.1557 3.4552 -2.1398 27 1 6.6773 3.7025 1.2485 28 1 5.1554 3.4567 2.1387 29 1 5.8950 2.1039 1.2492 30 1 4.1176 5.3541 -0.8913 31 1 4.1174 5.3547 0.8887 32 1 5.6391 5.6008 -0.0008 33 1 3.0743 -1.8041 1.8506 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259960314.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:03 Heat of formation + Delta-G solvation = 25.562257 kcal Electronic energy + Delta-G solvation = -16214.535435 eV Core-core repulsion = 13663.271737 eV Total energy + Delta-G solvation = -2551.263698 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.70747 -37.00267 -35.36623 -33.05541 -29.43279 -28.65101 -26.79334 -26.36636 -25.97915 -24.14237 -21.29243 -19.78684 -17.78232 -17.26913 -16.00531 -14.88640 -14.65934 -14.11842 -13.99672 -13.49439 -13.38716 -12.79211 -12.53144 -12.20749 -11.48508 -11.44956 -11.33446 -11.04554 -10.96983 -10.83142 -10.45557 -10.29686 -10.17574 -10.12428 -9.98916 -9.51710 -9.09709 -8.54037 -7.77730 -6.60225 -6.17853 -3.71061 3.24064 3.34546 3.39722 3.43719 4.06706 4.32566 4.40054 4.59829 5.52715 5.58570 5.66417 5.76149 5.77675 5.89166 6.01210 6.19496 6.27374 6.39708 6.52654 6.61119 6.69767 6.77252 6.85678 7.08237 7.22736 7.23654 7.43496 7.67099 7.94132 8.02270 8.65954 9.07720 9.23288 9.42882 9.46718 10.84938 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.021757 B = 0.014108 C = 0.009371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1286.628703 B = 1984.145499 C = 2987.329564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.245 6.245 3 C 0.159 3.841 4 N -0.522 5.522 5 H 0.411 0.589 6 N -0.327 5.327 7 C 0.052 3.948 8 C 0.031 3.969 9 C -0.139 4.139 10 C -0.135 4.135 11 C -0.130 4.130 12 C -0.024 4.024 13 C -0.448 4.448 14 H 0.074 0.926 15 C 0.074 3.926 16 N -0.806 5.806 17 Si 0.887 3.113 18 H -0.279 1.279 19 H -0.285 1.285 20 H -0.268 1.268 21 H 0.086 0.914 22 H 0.035 0.965 23 H 0.031 0.969 24 H 0.076 0.924 25 H 0.045 0.955 26 H 0.045 0.955 27 H 0.042 0.958 28 H 0.045 0.955 29 H 0.080 0.920 30 H 0.051 0.949 31 H 0.052 0.948 32 H 0.044 0.956 33 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.493 3.749 -2.015 4.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.150 6.150 3 C -0.007 4.007 4 N -0.243 5.243 5 H 0.251 0.749 6 N -0.157 5.157 7 C -0.112 4.112 8 C 0.029 3.971 9 C -0.197 4.197 10 C -0.193 4.193 11 C -0.187 4.187 12 C -0.034 4.034 13 C -0.482 4.482 14 H 0.092 0.908 15 C -0.139 4.139 16 N -0.436 5.436 17 Si 0.714 3.286 18 H -0.205 1.205 19 H -0.211 1.211 20 H -0.193 1.193 21 H 0.104 0.896 22 H 0.053 0.947 23 H 0.050 0.950 24 H 0.095 0.905 25 H 0.064 0.936 26 H 0.064 0.936 27 H 0.061 0.939 28 H 0.064 0.936 29 H 0.099 0.901 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.063 0.937 33 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -1.079 4.303 -1.868 4.814 hybrid contribution -0.273 -1.538 0.001 1.562 sum -1.352 2.765 -1.867 3.600 Atomic orbital electron populations 1.22715 0.83306 1.02499 0.98891 1.86477 1.16305 1.22437 1.89771 1.20190 0.91403 0.77286 1.11797 1.45762 1.07220 1.03920 1.67418 0.74857 1.76393 0.96556 1.12025 1.30702 1.21834 0.92328 0.93039 1.04013 1.18601 0.89727 0.92820 0.95944 1.21912 0.98072 1.03234 0.96453 1.21814 0.97620 1.03658 0.96228 1.21744 0.99960 0.95173 1.01867 1.16755 0.87958 0.90634 1.08087 1.18345 0.98850 0.96374 1.34627 0.90799 1.25431 0.95277 0.99198 0.93962 1.69884 1.28148 1.24012 1.21567 0.86669 0.80476 0.81854 0.79591 1.20493 1.21095 1.19295 0.89574 0.94650 0.95036 0.90539 0.93569 0.93553 0.93897 0.93596 0.90104 0.93002 0.92931 0.93688 0.92506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.42 10.31 101.05 1.04 1.46 16 2 O -0.25 -6.06 8.07 -17.55 -0.14 -6.20 16 3 C 0.16 4.09 7.37 -15.44 -0.11 3.97 16 4 N -0.52 -11.91 7.07 31.09 0.22 -11.69 16 5 H 0.41 7.83 8.30 -182.78 -1.52 6.31 16 6 N -0.33 -7.76 11.87 33.98 0.40 -7.35 16 7 C 0.05 1.26 5.65 -81.88 -0.46 0.79 16 8 C 0.03 0.62 0.81 -155.66 -0.13 0.50 16 9 C -0.14 -2.55 8.34 37.16 0.31 -2.24 16 10 C -0.14 -2.61 8.34 37.16 0.31 -2.30 16 11 C -0.13 -2.26 7.95 37.16 0.30 -1.97 16 12 C -0.02 -0.64 5.50 -106.60 -0.59 -1.23 16 13 C -0.45 -12.04 7.30 -37.92 -0.28 -12.32 16 14 H 0.07 1.90 5.43 -52.49 -0.28 1.61 16 15 C 0.07 1.97 5.09 -17.34 -0.09 1.89 16 16 N -0.81 -22.33 10.84 55.53 0.60 -21.73 16 17 Si 0.89 20.25 29.60 -169.99 -5.03 15.22 16 18 H -0.28 -6.26 7.11 56.52 0.40 -5.85 16 19 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 20 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 21 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 22 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 23 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 24 H 0.08 1.53 5.40 -51.93 -0.28 1.25 16 25 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 27 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 28 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.08 1.73 6.46 -51.93 -0.34 1.40 16 30 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 31 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.26 6.93 8.30 -40.82 -0.34 6.59 16 LS Contribution 270.76 15.07 4.08 4.08 Total: -1.00 -30.36 270.76 -5.34 -35.70 By element: Atomic # 1 Polarization: 9.19 SS G_CDS: -5.78 Total: 3.41 kcal Atomic # 6 Polarization: -11.75 SS G_CDS: 0.30 Total: -11.44 kcal Atomic # 7 Polarization: -41.99 SS G_CDS: 1.23 Total: -40.77 kcal Atomic # 8 Polarization: -6.06 SS G_CDS: -0.14 Total: -6.20 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -5.03 Total: 15.22 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -30.36 -5.34 -35.70 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259960314.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.267 kcal (2) G-P(sol) polarization free energy of solvation -30.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.705 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds