Wall clock time and date at job start Mon Mar 30 2020 02:42:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35285 * 116.99623 * 2 1 4 4 N 1.34916 * 126.52468 * 359.97438 * 3 2 1 5 5 H 0.97007 * 125.68594 * 359.97438 * 4 3 2 6 6 N 1.39854 * 108.62921 * 179.77266 * 4 3 2 7 7 C 1.30263 * 109.46569 * 0.42771 * 6 4 3 8 8 C 1.50696 * 125.90680 * 179.84224 * 7 6 4 9 9 C 1.53000 * 109.47400 * 239.69022 * 8 7 6 10 10 C 1.53007 * 109.47084 * 119.68971 * 8 7 6 11 11 C 1.53002 * 109.47395 * 359.69357 * 8 7 6 12 12 C 1.40259 * 126.51885 * 179.97438 * 3 2 1 13 13 C 1.41286 * 126.61729 * 0.02562 * 12 3 2 14 14 H 1.08001 * 119.99783 * 150.95387 * 13 12 3 15 15 C 1.39599 * 120.00255 * 330.95060 * 13 12 3 16 16 N 1.31149 * 119.99722 * 341.26927 * 15 13 12 17 17 Si 1.86801 * 119.99933 * 161.26220 * 15 13 12 18 18 H 1.48511 * 109.46901 * 90.00203 * 17 15 13 19 19 H 1.48496 * 109.47329 * 210.00186 * 17 15 13 20 20 H 1.48498 * 109.47259 * 330.00750 * 17 15 13 21 21 H 1.08998 * 109.47022 * 179.97438 * 1 2 3 22 22 H 1.08993 * 109.46888 * 299.99748 * 1 2 3 23 23 H 1.08997 * 109.47115 * 59.99672 * 1 2 3 24 24 H 1.08998 * 109.47039 * 300.00212 * 9 8 7 25 25 H 1.08996 * 109.47254 * 179.97438 * 9 8 7 26 26 H 1.09004 * 109.46856 * 60.00304 * 9 8 7 27 27 H 1.09004 * 109.47065 * 179.97438 * 10 8 7 28 28 H 1.08990 * 109.47315 * 300.00354 * 10 8 7 29 29 H 1.08998 * 109.46599 * 60.00710 * 10 8 7 30 30 H 1.09003 * 109.46574 * 299.99905 * 11 8 7 31 31 H 1.09003 * 109.46659 * 59.99697 * 11 8 7 32 32 H 1.08996 * 109.47563 * 179.97438 * 11 8 7 33 33 H 0.97005 * 119.99818 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0431 1.2054 0.0000 4 7 1.4416 2.4131 -0.0005 5 1 0.4840 2.5683 -0.0013 6 7 2.4286 3.4038 0.0050 7 6 3.6051 2.8446 -0.0004 8 6 4.9273 3.5676 -0.0006 9 6 5.7209 3.1789 -1.2496 10 6 5.7207 3.1799 1.2489 11 6 4.6828 5.0779 -0.0012 12 6 3.4264 1.4375 0.0005 13 6 4.4451 0.4585 0.0006 14 1 5.4012 0.6741 -0.4532 15 6 4.2160 -0.7873 0.5872 16 7 3.2334 -0.9385 1.4426 17 14 5.3087 -2.2390 0.1537 18 1 6.4611 -2.2879 1.0892 19 1 4.5276 -3.4971 0.2645 20 1 5.8063 -2.0861 -1.2370 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8899 24 1 5.8951 2.1030 -1.2492 25 1 6.6771 3.7022 -1.2500 26 1 5.1557 3.4552 -2.1398 27 1 6.6773 3.7025 1.2485 28 1 5.1554 3.4567 2.1387 29 1 5.8950 2.1039 1.2492 30 1 4.1176 5.3541 -0.8913 31 1 4.1174 5.3547 0.8887 32 1 5.6391 5.6008 -0.0008 33 1 3.0743 -1.8041 1.8506 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259960314.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:03 Heat of formation + Delta-G solvation = 4.916803 kcal Electronic energy + Delta-G solvation = -16215.430689 eV Core-core repulsion = 13663.271737 eV Total energy + Delta-G solvation = -2552.158952 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.53487 -38.73459 -36.99154 -34.99854 -31.29052 -30.47916 -28.32044 -27.85959 -27.50831 -26.05001 -22.97874 -21.67091 -19.60971 -18.96176 -17.91969 -16.69865 -16.40257 -15.88670 -15.59080 -15.06474 -15.02821 -14.44005 -14.18366 -14.00186 -13.13613 -12.91328 -12.82214 -12.80684 -12.61252 -12.42239 -12.16285 -11.95978 -11.87686 -11.67131 -11.56934 -11.32978 -10.94779 -10.45470 -9.59504 -8.55015 -8.13609 -5.70963 1.42811 1.49579 1.57407 1.60547 2.29070 2.41845 2.51093 2.96633 3.59041 3.99709 4.22286 4.29363 4.34931 4.38238 4.61401 4.64519 4.89425 5.00053 5.09183 5.11000 5.17376 5.24570 5.35760 5.45288 5.48094 5.64753 5.77561 5.86195 6.08257 6.26206 6.68394 7.20707 7.31588 7.52645 7.56338 8.89608 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.021757 B = 0.014108 C = 0.009371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1286.628703 B = 1984.145499 C = 2987.329564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.275 6.275 3 C 0.154 3.846 4 N -0.515 5.515 5 H 0.426 0.574 6 N -0.333 5.333 7 C 0.051 3.949 8 C 0.023 3.977 9 C -0.132 4.132 10 C -0.128 4.128 11 C -0.121 4.121 12 C -0.072 4.072 13 C -0.462 4.462 14 H 0.076 0.924 15 C 0.029 3.971 16 N -0.840 5.840 17 Si 0.951 3.049 18 H -0.272 1.272 19 H -0.286 1.286 20 H -0.266 1.266 21 H 0.107 0.893 22 H 0.043 0.957 23 H 0.053 0.947 24 H 0.054 0.946 25 H 0.081 0.919 26 H 0.043 0.957 27 H 0.080 0.920 28 H 0.033 0.967 29 H 0.052 0.948 30 H 0.047 0.953 31 H 0.042 0.958 32 H 0.078 0.922 33 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.171 4.447 -2.525 5.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.180 6.180 3 C -0.013 4.013 4 N -0.239 5.239 5 H 0.269 0.731 6 N -0.163 5.163 7 C -0.115 4.115 8 C 0.021 3.979 9 C -0.190 4.190 10 C -0.186 4.186 11 C -0.178 4.178 12 C -0.082 4.082 13 C -0.497 4.497 14 H 0.094 0.906 15 C -0.180 4.180 16 N -0.471 5.471 17 Si 0.776 3.224 18 H -0.197 1.197 19 H -0.212 1.212 20 H -0.190 1.190 21 H 0.126 0.874 22 H 0.062 0.938 23 H 0.071 0.929 24 H 0.073 0.927 25 H 0.100 0.900 26 H 0.062 0.938 27 H 0.099 0.901 28 H 0.052 0.948 29 H 0.071 0.929 30 H 0.066 0.934 31 H 0.061 0.939 32 H 0.097 0.903 33 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -0.442 5.012 -2.384 5.568 hybrid contribution -0.584 -1.694 0.146 1.798 sum -1.026 3.318 -2.237 4.131 Atomic orbital electron populations 1.23031 0.80236 1.04492 1.00288 1.86412 1.19640 1.22270 1.89702 1.20378 0.91873 0.78192 1.10809 1.45743 1.08022 1.03057 1.67042 0.73055 1.76344 0.96757 1.12300 1.30866 1.22487 0.93915 0.92541 1.02509 1.18859 0.88045 0.94179 0.96857 1.21843 0.99507 1.02180 0.95489 1.21741 0.99198 1.02228 0.95467 1.21664 1.01647 0.93310 1.01208 1.17233 0.88858 0.92086 1.10015 1.18574 0.99218 0.97104 1.34799 0.90594 1.26127 0.96669 1.01424 0.93784 1.69985 1.30049 1.24317 1.22796 0.85677 0.78846 0.78543 0.79332 1.19733 1.21164 1.19018 0.87434 0.93819 0.92853 0.92749 0.90003 0.93797 0.90140 0.94813 0.92890 0.93364 0.93875 0.90277 0.92658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.55 10.31 113.37 1.17 1.72 16 2 O -0.28 -13.64 8.07 -85.70 -0.69 -14.34 16 3 C 0.15 7.95 7.37 84.71 0.62 8.58 16 4 N -0.51 -23.30 7.07 -167.24 -1.18 -24.49 16 5 H 0.43 15.85 8.30 -213.47 -1.77 14.08 16 6 N -0.33 -15.65 11.87 -46.41 -0.55 -16.20 16 7 C 0.05 2.42 5.65 43.68 0.25 2.66 16 8 C 0.02 0.87 0.81 -52.93 -0.04 0.83 16 9 C -0.13 -4.62 8.34 71.98 0.60 -4.02 16 10 C -0.13 -4.79 8.34 71.98 0.60 -4.19 16 11 C -0.12 -3.90 7.95 71.98 0.57 -3.33 16 12 C -0.07 -3.87 5.50 -21.15 -0.12 -3.98 16 13 C -0.46 -25.25 7.30 23.35 0.17 -25.08 16 14 H 0.08 3.96 5.43 -2.91 -0.02 3.95 16 15 C 0.03 1.57 5.09 85.12 0.43 2.00 16 16 N -0.84 -47.33 10.84 21.78 0.24 -47.10 16 17 Si 0.95 42.07 29.60 68.60 2.03 44.10 16 18 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 19 H -0.29 -12.53 7.11 99.48 0.71 -11.83 16 20 H -0.27 -11.49 7.11 99.48 0.71 -10.79 16 21 H 0.11 3.27 8.14 -2.39 -0.02 3.25 16 22 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 23 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 24 H 0.05 2.14 5.40 -2.39 -0.01 2.12 16 25 H 0.08 2.23 8.14 -2.39 -0.02 2.22 16 26 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 27 H 0.08 2.35 8.14 -2.38 -0.02 2.33 16 28 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 29 H 0.05 2.27 6.46 -2.39 -0.02 2.25 16 30 H 0.05 1.57 8.14 -2.39 -0.02 1.56 16 31 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 33 H 0.26 14.06 8.30 -92.70 -0.77 13.29 16 Total: -1.00 -65.50 270.76 3.44 -62.06 By element: Atomic # 1 Polarization: 21.43 SS G_CDS: -0.66 Total: 20.77 kcal Atomic # 6 Polarization: -29.08 SS G_CDS: 4.26 Total: -24.82 kcal Atomic # 7 Polarization: -86.28 SS G_CDS: -1.50 Total: -87.78 kcal Atomic # 8 Polarization: -13.64 SS G_CDS: -0.69 Total: -14.34 kcal Atomic # 14 Polarization: 42.07 SS G_CDS: 2.03 Total: 44.10 kcal Total: -65.50 3.44 -62.06 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259960314.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.980 kcal (2) G-P(sol) polarization free energy of solvation -65.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.063 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds