Wall clock time and date at job start Mon Mar 30 2020 02:34:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30257 * 125.61654 * 2 1 4 4 C 1.34480 * 108.70024 * 180.02562 * 3 2 1 5 5 C 1.50697 * 126.16729 * 180.02562 * 4 3 2 6 6 H 1.09002 * 109.47764 * 165.02622 * 5 4 3 7 7 C 1.53009 * 109.47157 * 285.02798 * 5 4 3 8 8 N 1.46505 * 109.46993 * 45.02187 * 5 4 3 9 9 C 1.46497 * 120.00502 * 300.00129 * 8 5 4 10 10 C 1.36939 * 119.99585 * 120.00241 * 8 5 4 11 11 H 1.07999 * 119.99820 * 23.59263 * 10 8 5 12 12 C 1.38818 * 119.99988 * 203.58838 * 10 8 5 13 13 N 1.31612 * 119.99431 * 11.36898 * 12 10 8 14 14 Si 1.86790 * 119.99920 * 191.36482 * 12 10 8 15 15 H 1.48506 * 109.47212 * 90.00718 * 14 12 10 16 16 H 1.48508 * 109.47127 * 210.00076 * 14 12 10 17 17 H 1.48495 * 109.47701 * 330.00383 * 14 12 10 18 18 C 1.34327 * 107.66744 * 0.26627 * 4 3 2 19 19 C 1.50699 * 126.44211 * 179.73387 * 18 4 3 20 20 O 1.33970 * 125.62505 * 180.02562 * 2 1 3 21 21 H 1.09000 * 109.47335 * 89.99896 * 1 2 3 22 22 H 1.09008 * 109.46665 * 209.99835 * 1 2 3 23 23 H 1.09001 * 109.47013 * 329.99373 * 1 2 3 24 24 H 1.08994 * 109.47342 * 180.02562 * 7 5 4 25 25 H 1.09007 * 109.46550 * 299.99997 * 7 5 4 26 26 H 1.08999 * 109.47212 * 59.99752 * 7 5 4 27 27 H 1.09000 * 109.47045 * 94.45769 * 9 8 5 28 28 H 1.08998 * 109.47447 * 214.46411 * 9 8 5 29 29 H 1.09005 * 109.47035 * 334.46087 * 9 8 5 30 30 H 0.97010 * 119.99770 * 179.97438 * 13 12 10 31 31 H 1.09008 * 109.47370 * 90.00167 * 19 18 4 32 32 H 1.08997 * 109.47361 * 209.99738 * 19 18 4 33 33 H 1.09004 * 109.47167 * 329.99893 * 19 18 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2655 1.0589 0.0000 4 6 3.5521 0.6676 -0.0006 5 6 4.7570 1.5728 -0.0002 6 1 5.6439 0.9972 0.2647 7 6 4.9398 2.1791 -1.3931 8 7 4.5612 2.6460 0.9776 9 6 3.4284 3.5647 0.8401 10 6 5.4372 2.7904 2.0203 11 1 6.4420 2.4030 1.9389 12 6 5.0336 3.4347 3.1817 13 7 3.7605 3.7072 3.3745 14 14 6.2973 3.9147 4.4707 15 1 6.8024 5.2815 4.1840 16 1 5.6665 3.8922 5.8150 17 1 7.4278 2.9524 4.4383 18 6 3.5698 -0.6755 -0.0069 19 6 4.7937 -1.5547 -0.0154 20 8 2.2873 -1.0890 -0.0005 21 1 -0.3634 0.0000 -1.0276 22 1 -0.3633 -0.8901 0.5139 23 1 -0.3633 0.8899 0.5139 24 1 5.8115 2.8335 -1.3930 25 1 5.0854 1.3806 -2.1207 26 1 4.0529 2.7548 -1.6580 27 1 2.5942 3.2057 1.4429 28 1 3.7223 4.5575 1.1809 29 1 3.1259 3.6144 -0.2059 30 1 3.4784 4.1572 4.1864 31 1 5.0926 -1.7715 1.0102 32 1 4.5677 -2.4871 -0.5327 33 1 5.6061 -1.0415 -0.5299 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260034331.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:44 Heat of formation + Delta-G solvation = 16.682863 kcal Electronic energy + Delta-G solvation = -15954.896978 eV Core-core repulsion = 13403.248241 eV Total energy + Delta-G solvation = -2551.648737 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -44.12625 -38.23252 -35.53322 -34.52869 -33.09964 -30.90299 -30.65279 -27.97849 -26.52217 -25.17733 -23.38807 -22.05796 -20.67825 -18.76393 -17.73327 -17.45877 -16.75750 -15.82643 -15.48707 -14.93051 -14.74764 -14.43562 -14.20142 -14.12449 -13.49109 -13.43541 -13.37578 -13.11931 -12.89396 -12.64893 -12.55556 -12.31128 -12.18696 -11.96045 -11.78586 -11.59506 -11.17415 -10.61299 -9.29514 -8.78339 -7.79087 -5.30539 0.61699 1.45421 1.47592 1.56207 1.88867 1.90127 2.51388 3.26063 3.35939 3.71608 3.98233 4.07644 4.33097 4.44662 4.58822 4.65636 4.67474 4.70453 4.77879 4.84898 4.94799 5.09773 5.10279 5.27453 5.30292 5.31079 5.45556 5.60369 5.65892 5.88917 6.33861 7.01560 7.16226 7.88426 8.36733 9.23171 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.029478 B = 0.009006 C = 0.008441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.632588 B = 3108.454919 C = 3316.327312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 C 0.159 3.841 3 N -0.496 5.496 4 C -0.029 4.029 5 C 0.238 3.762 6 H 0.084 0.916 7 C -0.142 4.142 8 N -0.601 5.601 9 C 0.206 3.794 10 C -0.266 4.266 11 H 0.079 0.921 12 C -0.057 4.057 13 N -0.939 5.939 14 Si 0.973 3.027 15 H -0.285 1.285 16 H -0.298 1.298 17 H -0.263 1.263 18 C -0.074 4.074 19 C -0.057 4.057 20 O -0.215 6.215 21 H 0.113 0.887 22 H 0.105 0.895 23 H 0.093 0.907 24 H 0.060 0.940 25 H 0.073 0.927 26 H 0.038 0.962 27 H 0.000 1.000 28 H 0.004 0.996 29 H 0.017 0.983 30 H 0.245 0.755 31 H 0.081 0.919 32 H 0.097 0.903 33 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.512 -10.132 -8.759 13.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.047 4.047 3 N -0.226 5.226 4 C -0.150 4.150 5 C 0.130 3.870 6 H 0.102 0.898 7 C -0.201 4.201 8 N -0.322 5.322 9 C 0.061 3.939 10 C -0.396 4.396 11 H 0.097 0.903 12 C -0.252 4.252 13 N -0.585 5.585 14 Si 0.801 3.199 15 H -0.212 1.212 16 H -0.225 1.225 17 H -0.187 1.187 18 C -0.127 4.127 19 C -0.114 4.114 20 O -0.104 6.104 21 H 0.131 0.869 22 H 0.124 0.876 23 H 0.112 0.888 24 H 0.079 0.921 25 H 0.092 0.908 26 H 0.057 0.943 27 H 0.019 0.981 28 H 0.022 0.978 29 H 0.035 0.965 30 H 0.054 0.946 31 H 0.100 0.900 32 H 0.116 0.884 33 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -1.819 -9.464 -8.626 12.934 hybrid contribution 0.401 -0.020 1.124 1.194 sum -1.418 -9.484 -7.502 12.175 Atomic orbital electron populations 1.20377 0.78481 1.05582 1.05876 1.27242 0.98029 0.78426 1.01042 1.70351 1.02833 1.31291 1.18145 1.22823 0.94321 0.93273 1.04630 1.19078 0.90473 0.86852 0.90626 0.89777 1.22062 1.01101 1.00932 0.95977 1.44149 1.29889 1.30281 1.27926 1.20188 0.89006 0.90813 0.93930 1.19698 0.92867 1.34082 0.92965 0.90331 1.25942 0.97516 1.02442 0.99307 1.70320 1.15297 1.46128 1.26790 0.85172 0.78510 0.78377 0.77814 1.21204 1.22528 1.18707 1.23797 0.84647 0.95158 1.09100 1.20358 0.88676 0.98165 1.04166 1.84280 1.16923 1.37973 1.71243 0.86895 0.87607 0.88824 0.92104 0.90844 0.94278 0.98120 0.97766 0.96460 0.94576 0.89999 0.88426 0.87833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -1.09 10.51 71.24 0.75 -0.34 16 2 C 0.16 5.80 8.34 88.34 0.74 6.53 16 3 N -0.50 -22.06 9.71 -291.98 -2.84 -24.89 16 4 C -0.03 -1.24 5.86 41.26 0.24 -0.99 16 5 C 0.24 10.33 3.02 44.25 0.13 10.47 16 6 H 0.08 3.40 6.89 -2.39 -0.02 3.39 16 7 C -0.14 -5.18 9.16 71.99 0.66 -4.52 16 8 N -0.60 -32.32 2.80 -706.96 -1.98 -34.30 16 9 C 0.21 11.48 7.37 127.77 0.94 12.42 16 10 C -0.27 -15.15 9.58 84.03 0.81 -14.35 16 11 H 0.08 4.20 7.82 -2.91 -0.02 4.18 16 12 C -0.06 -3.34 5.13 84.86 0.44 -2.91 16 13 N -0.94 -58.99 10.66 21.65 0.23 -58.75 16 14 Si 0.97 46.40 29.57 68.60 2.03 48.43 16 15 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 16 H -0.30 -14.42 7.11 99.48 0.71 -13.71 16 17 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 18 C -0.07 -2.68 7.39 24.79 0.18 -2.50 16 19 C -0.06 -1.43 9.99 71.24 0.71 -0.72 16 20 O -0.22 -7.74 10.78 -3.68 -0.04 -7.78 16 21 H 0.11 2.02 8.14 -2.39 -0.02 2.00 16 22 H 0.11 1.94 8.14 -2.38 -0.02 1.92 16 23 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 24 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 25 H 0.07 2.18 8.14 -2.38 -0.02 2.16 16 26 H 0.04 1.53 6.66 -2.39 -0.02 1.52 16 27 H 0.00 0.03 7.11 -2.39 -0.02 0.01 16 28 H 0.00 0.22 7.29 -2.39 -0.02 0.20 16 29 H 0.02 0.88 6.41 -2.38 -0.02 0.86 16 30 H 0.25 14.93 8.31 -92.70 -0.77 14.16 16 31 H 0.08 2.02 8.14 -2.38 -0.02 2.00 16 32 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 33 H 0.10 2.25 7.46 -2.39 -0.02 2.24 16 Total: -1.00 -74.70 276.14 4.09 -70.61 By element: Atomic # 1 Polarization: 2.50 SS G_CDS: 1.09 Total: 3.59 kcal Atomic # 6 Polarization: -2.51 SS G_CDS: 5.60 Total: 3.09 kcal Atomic # 7 Polarization: -113.36 SS G_CDS: -4.59 Total: -117.94 kcal Atomic # 8 Polarization: -7.74 SS G_CDS: -0.04 Total: -7.78 kcal Atomic # 14 Polarization: 46.40 SS G_CDS: 2.03 Total: 48.43 kcal Total: -74.70 4.09 -70.61 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260034331.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.290 kcal (2) G-P(sol) polarization free energy of solvation -74.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.607 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds