Wall clock time and date at job start Mon Mar 30 2020 02:34:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.30257 * 125.62077 * 2 1 4 4 C 1.34477 * 108.70178 * 180.02562 * 3 2 1 5 5 C 1.50703 * 126.16178 * 179.97438 * 4 3 2 6 6 H 1.09006 * 109.46653 * 195.02169 * 5 4 3 7 7 C 1.53006 * 109.47053 * 75.02451 * 5 4 3 8 8 N 1.46497 * 109.47449 * 315.02300 * 5 4 3 9 9 C 1.46500 * 120.00127 * 60.00166 * 8 5 4 10 10 C 1.36938 * 119.99970 * 240.00154 * 8 5 4 11 11 H 1.08000 * 120.00144 * 39.08571 * 10 8 5 12 12 C 1.38811 * 119.99983 * 219.08341 * 10 8 5 13 13 N 1.31621 * 119.99989 * 26.23733 * 12 10 8 14 14 Si 1.86794 * 120.00211 * 205.95895 * 12 10 8 15 15 H 1.48502 * 109.47394 * 59.99982 * 14 12 10 16 16 H 1.48495 * 109.47266 * 180.02562 * 14 12 10 17 17 H 1.48508 * 109.47076 * 300.00151 * 14 12 10 18 18 C 1.34325 * 107.67177 * 0.25625 * 4 3 2 19 19 C 1.50698 * 126.44711 * 179.73937 * 18 4 3 20 20 O 1.33971 * 125.62084 * 180.02562 * 2 1 3 21 21 H 1.09000 * 109.47213 * 90.00458 * 1 2 3 22 22 H 1.09000 * 109.47385 * 210.00813 * 1 2 3 23 23 H 1.08996 * 109.47510 * 330.00779 * 1 2 3 24 24 H 1.08997 * 109.46654 * 179.97438 * 7 5 4 25 25 H 1.08992 * 109.46691 * 299.99713 * 7 5 4 26 26 H 1.09000 * 109.46771 * 59.99871 * 7 5 4 27 27 H 1.08999 * 109.46901 * 275.27157 * 9 8 5 28 28 H 1.08998 * 109.46718 * 35.26183 * 9 8 5 29 29 H 1.08998 * 109.47039 * 155.26547 * 9 8 5 30 30 H 0.97007 * 119.99601 * 5.10347 * 13 12 10 31 31 H 1.08995 * 109.47240 * 90.00083 * 19 18 4 32 32 H 1.08999 * 109.46985 * 210.00452 * 19 18 4 33 33 H 1.09002 * 109.46536 * 329.99740 * 19 18 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2656 1.0588 0.0000 4 6 3.5521 0.6675 -0.0006 5 6 4.7570 1.5727 -0.0013 6 1 5.6435 0.9973 -0.2680 7 6 4.9415 2.1774 1.3921 8 7 4.5601 2.6471 -0.9776 9 6 3.4275 3.5656 -0.8376 10 6 5.4348 2.7927 -2.0212 11 1 5.8278 1.9204 -2.5221 12 6 5.8162 4.0615 -2.4352 13 7 5.7920 5.0661 -1.5851 14 14 6.3712 4.3418 -4.1966 15 1 5.2721 3.9765 -5.1260 16 1 6.7229 5.7724 -4.3831 17 1 7.5605 3.4990 -4.4809 18 6 3.5698 -0.6756 -0.0066 19 6 4.7937 -1.5549 -0.0150 20 8 2.2872 -1.0890 -0.0005 21 1 -0.3633 -0.0001 -1.0277 22 1 -0.3634 -0.8899 0.5139 23 1 -0.3634 0.8900 0.5137 24 1 5.8132 2.8317 1.3916 25 1 4.0550 2.7526 1.6587 26 1 5.0880 1.3780 2.1184 27 1 2.5425 3.1236 -1.2954 28 1 3.2366 3.7484 0.2199 29 1 3.6606 4.5081 -1.3330 30 1 5.5793 4.9070 -0.6521 31 1 5.0924 -1.7715 1.0106 32 1 4.5676 -2.4873 -0.5323 33 1 5.6061 -1.0417 -0.5295 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260036426.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:46 Heat of formation + Delta-G solvation = 34.237778 kcal Electronic energy + Delta-G solvation = -15908.932600 eV Core-core repulsion = 13358.045101 eV Total energy + Delta-G solvation = -2550.887499 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.83778 -36.56786 -34.08102 -33.15930 -31.33062 -29.91147 -28.87951 -25.91282 -25.14086 -23.27471 -21.78061 -20.69708 -19.19506 -17.20844 -16.43790 -15.95666 -14.57786 -14.25699 -13.77913 -13.62532 -13.40648 -13.30634 -13.15576 -12.57736 -12.54206 -12.30670 -12.04516 -11.48914 -11.30234 -10.76471 -10.70088 -10.47498 -10.38632 -10.25051 -9.98904 -9.81502 -9.28400 -8.32362 -7.99993 -6.70726 -5.96900 -3.31100 1.88113 3.06177 3.24036 3.51183 3.55962 3.73422 4.42907 4.63083 5.11733 5.28906 5.30853 5.42981 5.46030 5.50500 5.60500 5.63135 5.79301 5.88452 6.11431 6.24299 6.34602 6.41569 6.51605 6.72577 6.83665 6.90525 7.03627 7.29067 7.42160 8.16343 8.31960 8.67055 9.22951 9.89485 10.40331 11.21704 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.032330 B = 0.008293 C = 0.008019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.848559 B = 3375.579660 C = 3490.873718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 C 0.160 3.840 3 N -0.454 5.454 4 C 0.011 3.989 5 C 0.242 3.758 6 H 0.078 0.922 7 C -0.154 4.154 8 N -0.584 5.584 9 C 0.131 3.869 10 C -0.358 4.358 11 H 0.046 0.954 12 C -0.015 4.015 13 N -0.902 5.902 14 Si 1.064 2.936 15 H -0.293 1.293 16 H -0.285 1.285 17 H -0.292 1.292 18 C -0.075 4.075 19 C -0.059 4.059 20 O -0.213 6.213 21 H 0.086 0.914 22 H 0.080 0.920 23 H 0.096 0.904 24 H 0.059 0.941 25 H 0.052 0.948 26 H 0.038 0.962 27 H 0.008 0.992 28 H 0.018 0.982 29 H 0.056 0.944 30 H 0.270 0.730 31 H 0.076 0.924 32 H 0.070 0.930 33 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.147 -11.173 4.419 13.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.046 4.046 3 N -0.184 5.184 4 C -0.111 4.111 5 C 0.133 3.867 6 H 0.096 0.904 7 C -0.214 4.214 8 N -0.306 5.306 9 C -0.014 4.014 10 C -0.488 4.488 11 H 0.064 0.936 12 C -0.219 4.219 13 N -0.540 5.540 14 Si 0.893 3.107 15 H -0.220 1.220 16 H -0.211 1.211 17 H -0.219 1.219 18 C -0.128 4.128 19 C -0.116 4.116 20 O -0.101 6.101 21 H 0.105 0.895 22 H 0.099 0.901 23 H 0.115 0.885 24 H 0.078 0.922 25 H 0.071 0.929 26 H 0.057 0.943 27 H 0.027 0.973 28 H 0.036 0.964 29 H 0.074 0.926 30 H 0.081 0.919 31 H 0.095 0.905 32 H 0.089 0.911 33 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -5.905 -9.400 3.309 11.584 hybrid contribution -0.341 -1.965 1.058 2.257 sum -6.246 -11.365 4.367 13.683 Atomic orbital electron populations 1.20098 0.82036 1.04318 1.04106 1.26212 0.96255 0.79212 1.02964 1.70443 1.02042 1.29433 1.16505 1.22839 0.94253 0.92210 1.01807 1.18885 0.89030 0.88771 0.90060 0.90426 1.22201 1.01881 1.00249 0.97049 1.43754 1.27195 1.32546 1.27083 1.20969 0.88771 0.94408 0.97253 1.19808 1.25254 0.94133 1.09587 0.93622 1.25965 0.97241 0.93269 1.05459 1.70752 1.44217 1.34237 1.04749 0.83559 0.75965 0.75802 0.75329 1.22033 1.21072 1.21873 1.23083 0.83485 0.95260 1.10957 1.20173 0.90617 0.97847 1.02990 1.84265 1.16788 1.37864 1.71208 0.89544 0.90104 0.88536 0.92155 0.92941 0.94271 0.97335 0.96368 0.92558 0.91889 0.90522 0.91094 0.88956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.55 10.51 36.00 0.38 -0.17 16 2 C 0.16 2.78 8.34 -12.95 -0.11 2.67 16 3 N -0.45 -9.52 9.42 -7.36 -0.07 -9.59 16 4 C 0.01 0.24 5.86 -82.81 -0.49 -0.24 16 5 C 0.24 5.44 3.11 -69.08 -0.21 5.23 16 6 H 0.08 1.71 6.58 -51.93 -0.34 1.36 16 7 C -0.15 -3.15 9.14 37.16 0.34 -2.81 16 8 N -0.58 -15.53 2.45 -174.81 -0.43 -15.96 16 9 C 0.13 3.42 8.49 59.85 0.51 3.93 16 10 C -0.36 -10.34 9.27 -15.06 -0.14 -10.48 16 11 H 0.05 1.33 7.95 -52.49 -0.42 0.91 16 12 C -0.02 -0.44 4.74 -17.43 -0.08 -0.52 16 13 N -0.90 -27.44 12.35 55.49 0.69 -26.75 16 14 Si 1.06 25.75 29.99 -169.99 -5.10 20.66 16 15 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 16 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 17 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 18 C -0.08 -1.37 7.39 -35.69 -0.26 -1.64 16 19 C -0.06 -0.81 10.17 36.00 0.37 -0.44 16 20 O -0.21 -3.77 10.78 5.34 0.06 -3.71 16 21 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 22 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 23 H 0.10 1.02 8.14 -51.93 -0.42 0.59 16 24 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 25 H 0.05 1.11 6.69 -51.93 -0.35 0.76 16 26 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.01 0.22 7.34 -51.93 -0.38 -0.16 16 28 H 0.02 0.44 6.45 -51.93 -0.33 0.11 16 29 H 0.06 1.59 5.83 -51.93 -0.30 1.29 16 30 H 0.27 8.32 7.39 -40.82 -0.30 8.02 16 31 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 32 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.09 1.27 7.03 -51.93 -0.37 0.90 16 LS Contribution 275.59 15.07 4.15 4.15 Total: -1.00 -33.60 275.59 -4.95 -38.55 By element: Atomic # 1 Polarization: 1.67 SS G_CDS: -4.55 Total: -2.88 kcal Atomic # 6 Polarization: -4.77 SS G_CDS: 0.30 Total: -4.47 kcal Atomic # 7 Polarization: -52.48 SS G_CDS: 0.19 Total: -52.30 kcal Atomic # 8 Polarization: -3.77 SS G_CDS: 0.06 Total: -3.71 kcal Atomic # 14 Polarization: 25.75 SS G_CDS: -5.10 Total: 20.66 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -33.60 -4.95 -38.55 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260036426.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.790 kcal (2) G-P(sol) polarization free energy of solvation -33.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.552 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds