Wall clock time and date at job start Mon Mar 30 2020 02:34:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.30257 * 125.62077 * 2 1 4 4 C 1.34477 * 108.70178 * 180.02562 * 3 2 1 5 5 C 1.50703 * 126.16178 * 179.97438 * 4 3 2 6 6 H 1.09006 * 109.46653 * 195.02169 * 5 4 3 7 7 C 1.53006 * 109.47053 * 75.02451 * 5 4 3 8 8 N 1.46497 * 109.47449 * 315.02300 * 5 4 3 9 9 C 1.46500 * 120.00127 * 60.00166 * 8 5 4 10 10 C 1.36938 * 119.99970 * 240.00154 * 8 5 4 11 11 H 1.08000 * 120.00144 * 39.08571 * 10 8 5 12 12 C 1.38811 * 119.99983 * 219.08341 * 10 8 5 13 13 N 1.31621 * 119.99989 * 26.23733 * 12 10 8 14 14 Si 1.86794 * 120.00211 * 205.95895 * 12 10 8 15 15 H 1.48502 * 109.47394 * 59.99982 * 14 12 10 16 16 H 1.48495 * 109.47266 * 180.02562 * 14 12 10 17 17 H 1.48508 * 109.47076 * 300.00151 * 14 12 10 18 18 C 1.34325 * 107.67177 * 0.25625 * 4 3 2 19 19 C 1.50698 * 126.44711 * 179.73937 * 18 4 3 20 20 O 1.33971 * 125.62084 * 180.02562 * 2 1 3 21 21 H 1.09000 * 109.47213 * 90.00458 * 1 2 3 22 22 H 1.09000 * 109.47385 * 210.00813 * 1 2 3 23 23 H 1.08996 * 109.47510 * 330.00779 * 1 2 3 24 24 H 1.08997 * 109.46654 * 179.97438 * 7 5 4 25 25 H 1.08992 * 109.46691 * 299.99713 * 7 5 4 26 26 H 1.09000 * 109.46771 * 59.99871 * 7 5 4 27 27 H 1.08999 * 109.46901 * 275.27157 * 9 8 5 28 28 H 1.08998 * 109.46718 * 35.26183 * 9 8 5 29 29 H 1.08998 * 109.47039 * 155.26547 * 9 8 5 30 30 H 0.97007 * 119.99601 * 5.10347 * 13 12 10 31 31 H 1.08995 * 109.47240 * 90.00083 * 19 18 4 32 32 H 1.08999 * 109.46985 * 210.00452 * 19 18 4 33 33 H 1.09002 * 109.46536 * 329.99740 * 19 18 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2656 1.0588 0.0000 4 6 3.5521 0.6675 -0.0006 5 6 4.7570 1.5727 -0.0013 6 1 5.6435 0.9973 -0.2680 7 6 4.9415 2.1774 1.3921 8 7 4.5601 2.6471 -0.9776 9 6 3.4275 3.5656 -0.8376 10 6 5.4348 2.7927 -2.0212 11 1 5.8278 1.9204 -2.5221 12 6 5.8162 4.0615 -2.4352 13 7 5.7920 5.0661 -1.5851 14 14 6.3712 4.3418 -4.1966 15 1 5.2721 3.9765 -5.1260 16 1 6.7229 5.7724 -4.3831 17 1 7.5605 3.4990 -4.4809 18 6 3.5698 -0.6756 -0.0066 19 6 4.7937 -1.5549 -0.0150 20 8 2.2872 -1.0890 -0.0005 21 1 -0.3633 -0.0001 -1.0277 22 1 -0.3634 -0.8899 0.5139 23 1 -0.3634 0.8900 0.5137 24 1 5.8132 2.8317 1.3916 25 1 4.0550 2.7526 1.6587 26 1 5.0880 1.3780 2.1184 27 1 2.5425 3.1236 -1.2954 28 1 3.2366 3.7484 0.2199 29 1 3.6606 4.5081 -1.3330 30 1 5.5793 4.9070 -0.6521 31 1 5.0924 -1.7715 1.0106 32 1 4.5676 -2.4873 -0.5323 33 1 5.6061 -1.0417 -0.5295 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260036426.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:46 Heat of formation + Delta-G solvation = 11.063264 kcal Electronic energy + Delta-G solvation = -15909.937522 eV Core-core repulsion = 13358.045101 eV Total energy + Delta-G solvation = -2551.892421 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -44.23532 -38.43986 -35.71564 -34.63722 -33.10422 -30.97215 -30.74898 -28.01440 -26.55638 -25.07140 -23.45323 -22.17127 -20.83682 -19.31631 -17.82281 -17.39515 -16.42472 -15.98371 -15.57326 -15.41886 -14.94509 -14.57766 -14.29660 -14.22978 -13.53491 -13.49453 -13.34090 -13.17241 -13.04691 -12.82524 -12.57768 -12.41891 -12.04872 -11.94993 -11.85978 -11.44053 -11.25667 -10.47105 -9.40948 -8.89343 -8.19228 -5.55926 0.52590 1.56440 1.64574 1.76476 1.80237 1.84133 2.63739 3.17464 3.21085 3.57331 3.85893 3.98417 4.21470 4.36121 4.49114 4.59316 4.62071 4.63713 4.69010 4.70852 4.83201 4.93194 5.02755 5.07116 5.15089 5.19344 5.21832 5.31248 5.53677 5.90636 6.38497 6.89631 7.10512 7.74022 8.24888 8.93413 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.032330 B = 0.008293 C = 0.008019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.848559 B = 3375.579660 C = 3490.873718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 C 0.166 3.834 3 N -0.499 5.499 4 C -0.029 4.029 5 C 0.239 3.761 6 H 0.078 0.922 7 C -0.141 4.141 8 N -0.600 5.600 9 C 0.151 3.849 10 C -0.369 4.369 11 H 0.040 0.960 12 C -0.062 4.062 13 N -0.924 5.924 14 Si 1.114 2.886 15 H -0.285 1.285 16 H -0.288 1.288 17 H -0.270 1.270 18 C -0.065 4.065 19 C -0.060 4.060 20 O -0.212 6.212 21 H 0.101 0.899 22 H 0.112 0.888 23 H 0.103 0.897 24 H 0.044 0.956 25 H 0.039 0.961 26 H 0.071 0.929 27 H 0.003 0.997 28 H 0.023 0.977 29 H 0.029 0.971 30 H 0.255 0.745 31 H 0.103 0.897 32 H 0.093 0.907 33 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.630 -13.155 4.268 15.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.041 4.041 3 N -0.229 5.229 4 C -0.150 4.150 5 C 0.132 3.868 6 H 0.096 0.904 7 C -0.200 4.200 8 N -0.323 5.323 9 C 0.006 3.994 10 C -0.498 4.498 11 H 0.058 0.942 12 C -0.261 4.261 13 N -0.563 5.563 14 Si 0.938 3.062 15 H -0.211 1.211 16 H -0.214 1.214 17 H -0.195 1.195 18 C -0.118 4.118 19 C -0.116 4.116 20 O -0.100 6.100 21 H 0.120 0.880 22 H 0.131 0.869 23 H 0.122 0.878 24 H 0.063 0.937 25 H 0.058 0.942 26 H 0.090 0.910 27 H 0.021 0.979 28 H 0.041 0.959 29 H 0.047 0.953 30 H 0.065 0.935 31 H 0.121 0.879 32 H 0.112 0.888 33 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -6.386 -11.412 3.184 13.459 hybrid contribution -0.275 -1.448 1.161 1.876 sum -6.661 -12.860 4.345 15.120 Atomic orbital electron populations 1.20421 0.78108 1.06259 1.05626 1.27317 0.98063 0.78287 1.00443 1.70356 1.02535 1.31388 1.18659 1.22517 0.93955 0.93203 1.05332 1.18940 0.90174 0.87865 0.89853 0.90448 1.22033 1.00420 1.00671 0.96898 1.43903 1.26890 1.33519 1.27954 1.20672 0.88593 0.93119 0.97036 1.20012 1.25173 0.94107 1.10548 0.94247 1.27355 0.97143 0.93151 1.08472 1.70875 1.46328 1.34839 1.04247 0.82897 0.76564 0.75815 0.70969 1.21128 1.21371 1.19525 1.23711 0.84728 0.94931 1.08441 1.20376 0.88413 0.97859 1.04949 1.84310 1.16664 1.37917 1.71128 0.88038 0.86914 0.87804 0.93733 0.94231 0.90983 0.97853 0.95867 0.95274 0.93492 0.87884 0.88824 0.89455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.94 10.51 71.23 0.75 -0.19 16 2 C 0.17 5.46 8.34 88.34 0.74 6.20 16 3 N -0.50 -20.67 9.42 -291.98 -2.75 -23.42 16 4 C -0.03 -1.21 5.86 41.26 0.24 -0.97 16 5 C 0.24 10.82 3.11 44.25 0.14 10.96 16 6 H 0.08 3.41 6.58 -2.38 -0.02 3.40 16 7 C -0.14 -5.77 9.14 71.98 0.66 -5.11 16 8 N -0.60 -32.49 2.45 -706.97 -1.73 -34.22 16 9 C 0.15 8.13 8.49 127.77 1.08 9.21 16 10 C -0.37 -21.54 9.27 84.03 0.78 -20.76 16 11 H 0.04 2.32 7.95 -2.91 -0.02 2.29 16 12 C -0.06 -3.65 4.74 84.86 0.40 -3.24 16 13 N -0.92 -57.41 12.35 21.65 0.27 -57.14 16 14 Si 1.11 51.98 29.99 68.60 2.06 54.03 16 15 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 16 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 17 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 18 C -0.07 -2.25 7.39 24.79 0.18 -2.07 16 19 C -0.06 -1.45 10.17 71.24 0.72 -0.73 16 20 O -0.21 -7.00 10.78 -3.82 -0.04 -7.05 16 21 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 22 H 0.11 1.54 8.14 -2.39 -0.02 1.52 16 23 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 24 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 25 H 0.04 1.68 6.69 -2.39 -0.02 1.67 16 26 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 27 H 0.00 0.18 7.34 -2.39 -0.02 0.16 16 28 H 0.02 1.18 6.45 -2.39 -0.02 1.16 16 29 H 0.03 1.70 5.83 -2.39 -0.01 1.68 16 30 H 0.26 16.26 7.39 -92.70 -0.69 15.58 16 31 H 0.10 2.00 8.14 -2.39 -0.02 1.98 16 32 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 33 H 0.09 2.24 7.03 -2.39 -0.02 2.22 16 Total: -1.00 -73.42 275.59 4.68 -68.74 By element: Atomic # 1 Polarization: 4.57 SS G_CDS: 1.18 Total: 5.75 kcal Atomic # 6 Polarization: -12.39 SS G_CDS: 5.70 Total: -6.70 kcal Atomic # 7 Polarization: -110.57 SS G_CDS: -4.21 Total: -114.78 kcal Atomic # 8 Polarization: -7.00 SS G_CDS: -0.04 Total: -7.05 kcal Atomic # 14 Polarization: 51.98 SS G_CDS: 2.06 Total: 54.03 kcal Total: -73.42 4.68 -68.74 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260036426.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.800 kcal (2) G-P(sol) polarization free energy of solvation -73.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.737 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds