Wall clock time and date at job start Mon Mar 30 2020 03:14:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46502 * 109.47086 * 2 1 4 4 N 1.39855 * 125.68496 * 270.26328 * 3 2 1 5 5 C 1.30273 * 109.46069 * 180.16922 * 4 3 2 6 6 C 1.50704 * 125.90255 * 179.88301 * 5 4 3 7 7 C 1.53000 * 109.46912 * 299.68873 * 6 5 4 8 8 C 1.52999 * 109.47274 * 59.68490 * 6 5 4 9 9 C 1.41839 * 108.19022 * 359.61386 * 5 4 3 10 10 C 1.41284 * 126.61985 * 180.24142 * 9 5 4 11 11 H 1.07998 * 120.00199 * 311.74694 * 10 9 5 12 12 C 1.39598 * 119.99895 * 131.74247 * 10 9 5 13 13 N 1.31153 * 120.00425 * 184.13588 * 12 10 9 14 14 Si 1.86801 * 119.99964 * 4.14203 * 12 10 9 15 15 H 1.48503 * 109.47386 * 95.76257 * 14 12 10 16 16 H 1.48500 * 109.47076 * 215.76228 * 14 12 10 17 17 H 1.48499 * 109.46926 * 335.76164 * 14 12 10 18 18 C 1.34921 * 125.68717 * 90.00283 * 3 2 1 19 19 O 1.35278 * 126.51895 * 359.96460 * 18 3 2 20 20 H 1.09005 * 109.47312 * 59.99953 * 1 2 3 21 21 H 1.08996 * 109.47295 * 179.97438 * 1 2 3 22 22 H 1.09007 * 109.47161 * 300.00009 * 1 2 3 23 23 H 1.09008 * 109.47140 * 240.00537 * 2 1 3 24 24 H 1.08993 * 109.47467 * 120.00393 * 2 1 3 25 25 H 1.08996 * 109.47226 * 179.68763 * 6 5 4 26 26 H 1.08996 * 109.47264 * 59.99914 * 7 6 5 27 27 H 1.09003 * 109.47038 * 180.02562 * 7 6 5 28 28 H 1.09001 * 109.46913 * 300.00075 * 7 6 5 29 29 H 1.08996 * 109.47217 * 300.00279 * 8 6 5 30 30 H 1.09003 * 109.46893 * 60.00371 * 8 6 5 31 31 H 1.09000 * 109.47537 * 179.97438 * 8 6 5 32 32 H 0.96996 * 120.00783 * 180.02562 * 13 12 10 33 33 H 0.96704 * 114.00020 * 276.22848 * 19 18 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2853 2.1521 -1.1359 5 6 2.7072 3.3297 -0.7720 6 6 3.1033 4.4514 -1.6972 7 6 4.2678 3.9975 -2.5797 8 6 1.9119 4.8295 -2.5796 9 6 2.7234 3.3756 0.6456 10 6 3.1109 4.4713 1.4489 11 1 4.0350 4.9913 1.2437 12 6 2.2993 4.8819 2.5079 13 7 2.6171 5.9478 3.2028 14 14 0.7605 3.9129 2.9354 15 1 1.0664 2.9549 4.0281 16 1 -0.3050 4.8469 3.3799 17 1 0.2969 3.1667 1.7382 18 6 2.2807 2.1233 1.0958 19 8 2.1423 1.7337 2.3839 20 1 -0.3634 0.5139 -0.8900 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3634 0.5139 0.8900 23 1 1.8933 -0.5138 -0.8901 24 1 1.8933 -0.5138 0.8899 25 1 3.4089 5.3167 -1.1091 26 1 3.9622 3.1322 -3.1678 27 1 4.5546 4.8090 -3.2486 28 1 5.1165 3.7281 -1.9510 29 1 1.6063 3.9641 -3.1677 30 1 1.0823 5.1529 -1.9509 31 1 2.1982 5.6411 -3.2485 32 1 2.0534 6.2329 3.9388 33 1 1.2438 1.8276 2.7289 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260059807.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:33 Heat of formation + Delta-G solvation = 27.513835 kcal Electronic energy + Delta-G solvation = -16111.767882 eV Core-core repulsion = 13560.588811 eV Total energy + Delta-G solvation = -2551.179071 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.10797 -36.59051 -35.04175 -33.32980 -32.63632 -29.29071 -28.24387 -26.54348 -24.58905 -23.32401 -21.07452 -20.17233 -18.62739 -17.71878 -16.22743 -16.19624 -14.45274 -14.33834 -14.11111 -13.65726 -13.55746 -13.10081 -12.82718 -12.59460 -12.17765 -11.95562 -11.73708 -11.50502 -11.17828 -10.96224 -10.76731 -10.52922 -10.43994 -10.31043 -10.20206 -9.65557 -9.32329 -8.73961 -7.99932 -7.09100 -6.42275 -4.12848 2.71009 3.02929 3.11779 3.19605 3.39077 3.85437 4.16104 4.92103 5.05370 5.20939 5.35971 5.42014 5.59681 5.64033 5.80352 5.87192 5.88367 6.16043 6.23797 6.25692 6.35127 6.38831 6.53732 6.76933 6.86904 6.98247 7.20744 7.35506 7.51562 7.83053 8.40668 8.69776 8.84936 8.95434 9.20225 10.63137 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.019243 B = 0.016010 C = 0.010160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1454.704635 B = 1748.539437 C = 2755.234107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.136 3.864 3 N -0.392 5.392 4 N -0.292 5.292 5 C 0.052 3.948 6 C -0.005 4.005 7 C -0.137 4.137 8 C -0.136 4.136 9 C -0.032 4.032 10 C -0.437 4.437 11 H 0.088 0.912 12 C 0.087 3.913 13 N -0.858 5.858 14 Si 0.901 3.099 15 H -0.271 1.271 16 H -0.296 1.296 17 H -0.268 1.268 18 C 0.112 3.888 19 O -0.451 6.451 20 H 0.062 0.938 21 H 0.067 0.933 22 H 0.052 0.948 23 H 0.084 0.916 24 H 0.081 0.919 25 H 0.094 0.906 26 H 0.052 0.948 27 H 0.050 0.950 28 H 0.052 0.948 29 H 0.052 0.948 30 H 0.053 0.947 31 H 0.051 0.949 32 H 0.274 0.726 33 H 0.345 0.655 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.795 -6.695 -6.421 10.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.013 3.987 3 N -0.189 5.189 4 N -0.118 5.118 5 C -0.114 4.114 6 C -0.025 4.025 7 C -0.195 4.195 8 C -0.194 4.194 9 C -0.044 4.044 10 C -0.472 4.472 11 H 0.106 0.894 12 C -0.123 4.123 13 N -0.490 5.490 14 Si 0.734 3.266 15 H -0.199 1.199 16 H -0.225 1.225 17 H -0.194 1.194 18 C -0.052 4.052 19 O -0.258 6.258 20 H 0.081 0.919 21 H 0.086 0.914 22 H 0.071 0.929 23 H 0.102 0.898 24 H 0.099 0.901 25 H 0.112 0.888 26 H 0.071 0.929 27 H 0.069 0.931 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.084 0.916 33 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -3.544 -7.510 -7.076 10.910 hybrid contribution -1.311 -0.086 1.374 1.902 sum -4.855 -7.596 -5.701 10.666 Atomic orbital electron populations 1.22205 0.95956 1.01836 1.02687 1.21278 0.93966 0.80320 1.03101 1.48175 1.55878 1.11103 1.03793 1.76435 1.23506 1.04803 1.07020 1.22209 1.01617 0.93442 0.94178 1.19400 0.94733 0.94646 0.93748 1.21778 0.98056 1.00617 0.99048 1.21756 0.98148 1.00517 0.98998 1.17976 1.03731 0.91139 0.91523 1.18271 1.07412 1.10877 1.10654 0.89399 1.25635 0.98120 0.94046 0.94515 1.69712 1.38294 1.22404 1.18601 0.86496 0.82088 0.79298 0.78676 1.19940 1.22451 1.19370 1.19671 1.15941 0.90529 0.79012 1.85107 1.32872 1.86532 1.21275 0.91877 0.91422 0.92900 0.89782 0.90054 0.88788 0.92851 0.93068 0.92860 0.92907 0.92826 0.93044 0.91628 0.79477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.42 10.24 37.15 0.38 -2.04 16 2 C 0.14 2.25 7.08 -4.04 -0.03 2.22 16 3 N -0.39 -8.62 3.59 -60.48 -0.22 -8.84 16 4 N -0.29 -6.55 12.45 33.98 0.42 -6.13 16 5 C 0.05 1.21 5.78 -81.88 -0.47 0.73 16 6 C 0.00 -0.09 3.30 -91.77 -0.30 -0.40 16 7 C -0.14 -2.28 9.18 37.16 0.34 -1.94 16 8 C -0.14 -2.30 9.18 37.16 0.34 -1.96 16 9 C -0.03 -0.85 4.97 -106.61 -0.53 -1.38 16 10 C -0.44 -12.38 9.29 -37.92 -0.35 -12.74 16 11 H 0.09 2.61 8.06 -52.49 -0.42 2.19 16 12 C 0.09 2.44 5.51 -17.33 -0.10 2.34 16 13 N -0.86 -24.74 13.94 55.53 0.77 -23.97 16 14 Si 0.90 21.59 23.10 -169.99 -3.93 17.66 16 15 H -0.27 -6.16 6.43 56.52 0.36 -5.80 16 16 H -0.30 -7.00 7.11 56.52 0.40 -6.59 16 17 H -0.27 -6.41 5.78 56.52 0.33 -6.09 16 18 C 0.11 2.76 5.99 -15.44 -0.09 2.67 16 19 O -0.45 -10.78 11.61 -17.53 -0.20 -10.99 16 20 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 21 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 22 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 23 H 0.08 1.23 8.14 -51.92 -0.42 0.81 16 24 H 0.08 1.26 8.12 -51.93 -0.42 0.83 16 25 H 0.09 1.93 7.56 -51.93 -0.39 1.54 16 26 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 27 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.27 7.29 8.30 -40.82 -0.34 6.95 16 33 H 0.35 7.48 4.67 45.56 0.21 7.69 16 LS Contribution 272.65 15.07 4.11 4.11 Total: -1.00 -31.00 272.65 -4.35 -35.35 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: -4.50 Total: 5.29 kcal Atomic # 6 Polarization: -11.68 SS G_CDS: -0.81 Total: -12.49 kcal Atomic # 7 Polarization: -39.92 SS G_CDS: 0.98 Total: -38.94 kcal Atomic # 8 Polarization: -10.78 SS G_CDS: -0.20 Total: -10.99 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -3.93 Total: 17.66 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -31.00 -4.35 -35.35 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260059807.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.868 kcal (2) G-P(sol) polarization free energy of solvation -31.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.354 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds