Wall clock time and date at job start Mon Mar 30 2020 03:14:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46502 * 109.47086 * 2 1 4 4 N 1.39855 * 125.68496 * 270.26328 * 3 2 1 5 5 C 1.30273 * 109.46069 * 180.16922 * 4 3 2 6 6 C 1.50704 * 125.90255 * 179.88301 * 5 4 3 7 7 C 1.53000 * 109.46912 * 299.68873 * 6 5 4 8 8 C 1.52999 * 109.47274 * 59.68490 * 6 5 4 9 9 C 1.41839 * 108.19022 * 359.61386 * 5 4 3 10 10 C 1.41284 * 126.61985 * 180.24142 * 9 5 4 11 11 H 1.07998 * 120.00199 * 311.74694 * 10 9 5 12 12 C 1.39598 * 119.99895 * 131.74247 * 10 9 5 13 13 N 1.31153 * 120.00425 * 184.13588 * 12 10 9 14 14 Si 1.86801 * 119.99964 * 4.14203 * 12 10 9 15 15 H 1.48503 * 109.47386 * 95.76257 * 14 12 10 16 16 H 1.48500 * 109.47076 * 215.76228 * 14 12 10 17 17 H 1.48499 * 109.46926 * 335.76164 * 14 12 10 18 18 C 1.34921 * 125.68717 * 90.00283 * 3 2 1 19 19 O 1.35278 * 126.51895 * 359.96460 * 18 3 2 20 20 H 1.09005 * 109.47312 * 59.99953 * 1 2 3 21 21 H 1.08996 * 109.47295 * 179.97438 * 1 2 3 22 22 H 1.09007 * 109.47161 * 300.00009 * 1 2 3 23 23 H 1.09008 * 109.47140 * 240.00537 * 2 1 3 24 24 H 1.08993 * 109.47467 * 120.00393 * 2 1 3 25 25 H 1.08996 * 109.47226 * 179.68763 * 6 5 4 26 26 H 1.08996 * 109.47264 * 59.99914 * 7 6 5 27 27 H 1.09003 * 109.47038 * 180.02562 * 7 6 5 28 28 H 1.09001 * 109.46913 * 300.00075 * 7 6 5 29 29 H 1.08996 * 109.47217 * 300.00279 * 8 6 5 30 30 H 1.09003 * 109.46893 * 60.00371 * 8 6 5 31 31 H 1.09000 * 109.47537 * 179.97438 * 8 6 5 32 32 H 0.96996 * 120.00783 * 180.02562 * 13 12 10 33 33 H 0.96704 * 114.00020 * 276.22848 * 19 18 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2853 2.1521 -1.1359 5 6 2.7072 3.3297 -0.7720 6 6 3.1033 4.4514 -1.6972 7 6 4.2678 3.9975 -2.5797 8 6 1.9119 4.8295 -2.5796 9 6 2.7234 3.3756 0.6456 10 6 3.1109 4.4713 1.4489 11 1 4.0350 4.9913 1.2437 12 6 2.2993 4.8819 2.5079 13 7 2.6171 5.9478 3.2028 14 14 0.7605 3.9129 2.9354 15 1 1.0664 2.9549 4.0281 16 1 -0.3050 4.8469 3.3799 17 1 0.2969 3.1667 1.7382 18 6 2.2807 2.1233 1.0958 19 8 2.1423 1.7337 2.3839 20 1 -0.3634 0.5139 -0.8900 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3634 0.5139 0.8900 23 1 1.8933 -0.5138 -0.8901 24 1 1.8933 -0.5138 0.8899 25 1 3.4089 5.3167 -1.1091 26 1 3.9622 3.1322 -3.1678 27 1 4.5546 4.8090 -3.2486 28 1 5.1165 3.7281 -1.9510 29 1 1.6063 3.9641 -3.1677 30 1 1.0823 5.1529 -1.9509 31 1 2.1982 5.6411 -3.2485 32 1 2.0534 6.2329 3.9388 33 1 1.2438 1.8276 2.7289 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260059807.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:32 Heat of formation + Delta-G solvation = 4.656308 kcal Electronic energy + Delta-G solvation = -16112.759059 eV Core-core repulsion = 13560.588811 eV Total energy + Delta-G solvation = -2552.170248 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.92997 -38.45032 -36.61097 -35.17630 -34.25103 -31.18537 -29.87576 -27.89011 -26.48931 -24.81751 -22.58422 -22.08304 -20.48129 -19.54576 -18.16257 -17.90535 -16.28598 -15.99773 -15.64460 -15.40771 -14.93398 -14.74511 -14.52268 -14.07950 -13.96088 -13.41405 -13.24525 -12.96326 -12.65827 -12.45293 -12.41173 -12.22633 -12.07625 -11.93283 -11.80111 -11.60179 -11.18358 -10.69041 -9.73349 -9.05191 -8.49958 -6.26417 0.86945 1.07767 1.21381 1.32150 1.72433 1.96354 2.17684 3.02222 3.20288 3.75945 4.00777 4.13034 4.17305 4.35128 4.43397 4.55564 4.71226 4.75046 4.90809 4.91360 5.05235 5.08509 5.13142 5.18699 5.20055 5.48110 5.49469 5.59764 5.67541 5.97069 6.29006 6.68791 6.90580 7.04679 7.13631 8.58877 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.019243 B = 0.016010 C = 0.010160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1454.704635 B = 1748.539437 C = 2755.234107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.121 3.879 3 N -0.387 5.387 4 N -0.288 5.288 5 C 0.047 3.953 6 C -0.012 4.012 7 C -0.127 4.127 8 C -0.127 4.127 9 C -0.079 4.079 10 C -0.455 4.455 11 H 0.048 0.952 12 C 0.035 3.965 13 N -0.903 5.903 14 Si 0.961 3.039 15 H -0.249 1.249 16 H -0.290 1.290 17 H -0.268 1.268 18 C 0.122 3.878 19 O -0.458 6.458 20 H 0.053 0.947 21 H 0.109 0.891 22 H 0.040 0.960 23 H 0.107 0.893 24 H 0.095 0.905 25 H 0.071 0.929 26 H 0.058 0.942 27 H 0.082 0.918 28 H 0.038 0.962 29 H 0.058 0.942 30 H 0.036 0.964 31 H 0.082 0.918 32 H 0.278 0.722 33 H 0.362 0.638 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.301 -8.912 -7.575 12.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.000 4.000 3 N -0.184 5.184 4 N -0.114 5.114 5 C -0.119 4.119 6 C -0.032 4.032 7 C -0.185 4.185 8 C -0.185 4.185 9 C -0.090 4.090 10 C -0.490 4.490 11 H 0.067 0.933 12 C -0.170 4.170 13 N -0.538 5.538 14 Si 0.790 3.210 15 H -0.175 1.175 16 H -0.218 1.218 17 H -0.194 1.194 18 C -0.044 4.044 19 O -0.266 6.266 20 H 0.072 0.928 21 H 0.128 0.872 22 H 0.059 0.941 23 H 0.125 0.875 24 H 0.114 0.886 25 H 0.089 0.911 26 H 0.077 0.923 27 H 0.101 0.899 28 H 0.057 0.943 29 H 0.077 0.923 30 H 0.056 0.944 31 H 0.101 0.899 32 H 0.088 0.912 33 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -5.054 -9.764 -8.249 13.745 hybrid contribution -0.781 0.476 1.672 1.906 sum -5.835 -9.288 -6.577 12.790 Atomic orbital electron populations 1.22160 0.93872 1.04282 1.01600 1.21828 0.95684 0.77463 1.04988 1.48656 1.54479 1.12624 1.02658 1.76426 1.23431 1.04486 1.07062 1.22654 1.01051 0.94532 0.93647 1.19541 0.96949 0.92827 0.93901 1.21702 0.96195 1.01936 0.98682 1.21691 0.96354 1.01816 0.98656 1.18136 1.06369 0.91571 0.92941 1.18198 1.06653 1.12030 1.12149 0.93342 1.26427 1.01231 0.94951 0.94390 1.69805 1.40074 1.24096 1.19779 0.85586 0.78228 0.78387 0.78757 1.17545 1.21790 1.19358 1.19653 1.14186 0.90658 0.79861 1.85033 1.34097 1.86462 1.21012 0.92801 0.87224 0.94098 0.87507 0.88649 0.91107 0.92263 0.89911 0.94327 0.92262 0.94428 0.89886 0.91197 0.77749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.99 10.24 71.98 0.74 -3.25 16 2 C 0.12 3.55 7.08 86.38 0.61 4.16 16 3 N -0.39 -16.19 3.59 -456.94 -1.64 -17.83 16 4 N -0.29 -12.47 12.45 -46.40 -0.58 -13.05 16 5 C 0.05 2.18 5.78 43.68 0.25 2.43 16 6 C -0.01 -0.45 3.30 -11.54 -0.04 -0.49 16 7 C -0.13 -4.07 9.18 71.98 0.66 -3.41 16 8 C -0.13 -4.12 9.18 71.98 0.66 -3.46 16 9 C -0.08 -4.17 4.97 -21.15 -0.11 -4.28 16 10 C -0.45 -26.95 9.29 23.35 0.22 -26.73 16 11 H 0.05 3.12 8.06 -2.91 -0.02 3.09 16 12 C 0.04 2.03 5.51 85.12 0.47 2.50 16 13 N -0.90 -54.08 13.94 21.78 0.30 -53.78 16 14 Si 0.96 44.49 23.10 68.60 1.58 46.08 16 15 H -0.25 -10.48 6.43 99.48 0.64 -9.84 16 16 H -0.29 -13.02 7.11 99.48 0.71 -12.32 16 17 H -0.27 -12.23 5.78 99.48 0.57 -11.66 16 18 C 0.12 5.88 5.99 84.71 0.51 6.38 16 19 O -0.46 -21.00 11.61 -85.63 -0.99 -21.99 16 20 H 0.05 1.44 8.14 -2.38 -0.02 1.42 16 21 H 0.11 1.82 8.14 -2.39 -0.02 1.80 16 22 H 0.04 1.11 8.14 -2.38 -0.02 1.09 16 23 H 0.11 2.69 8.14 -2.38 -0.02 2.67 16 24 H 0.10 2.57 8.12 -2.39 -0.02 2.55 16 25 H 0.07 3.04 7.56 -2.39 -0.02 3.03 16 26 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 27 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 28 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 29 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 30 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 32 H 0.28 15.29 8.30 -92.71 -0.77 14.52 16 33 H 0.36 14.58 4.67 -74.05 -0.35 14.24 16 Total: -1.00 -68.92 272.65 3.20 -65.72 By element: Atomic # 1 Polarization: 20.44 SS G_CDS: 0.55 Total: 20.99 kcal Atomic # 6 Polarization: -30.11 SS G_CDS: 3.97 Total: -26.14 kcal Atomic # 7 Polarization: -82.74 SS G_CDS: -1.92 Total: -84.66 kcal Atomic # 8 Polarization: -21.00 SS G_CDS: -0.99 Total: -21.99 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 1.58 Total: 46.08 kcal Total: -68.92 3.20 -65.72 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260059807.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.377 kcal (2) G-P(sol) polarization free energy of solvation -68.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.720 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds