Wall clock time and date at job start Mon Mar 30 2020 02:36:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30176 * 126.80009 * 2 1 4 4 O 1.20919 * 111.60459 * 179.68714 * 3 2 1 5 5 C 1.34048 * 111.56504 * 0.45119 * 4 3 2 6 6 C 1.50699 * 126.77666 * 179.82675 * 5 4 3 7 7 H 1.09002 * 109.46959 * 179.68699 * 6 5 4 8 8 C 1.53000 * 109.47083 * 59.68484 * 6 5 4 9 9 N 1.46901 * 109.46818 * 65.00393 * 8 6 5 10 10 C 1.52997 * 109.47078 * 299.68611 * 6 5 4 11 11 C 1.50705 * 109.47390 * 184.99841 * 10 6 5 12 12 H 1.08000 * 119.99498 * 0.02562 * 11 10 6 13 13 C 1.37870 * 120.00441 * 180.02562 * 11 10 6 14 14 N 1.31513 * 119.99840 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 120.00083 * 180.02562 * 13 11 10 16 16 H 1.48495 * 109.46926 * 0.02562 * 15 13 11 17 17 H 1.48502 * 109.46855 * 119.99990 * 15 13 11 18 18 H 1.48496 * 109.46967 * 239.99783 * 15 13 11 19 19 C 1.35452 * 106.44247 * 359.56604 * 5 4 3 20 20 C 1.50703 * 128.00094 * 180.24091 * 19 5 4 21 21 H 1.08993 * 109.47612 * 270.04270 * 1 2 3 22 22 H 1.09008 * 109.46808 * 30.04433 * 1 2 3 23 23 H 1.09000 * 109.47074 * 150.04025 * 1 2 3 24 24 H 1.09002 * 109.47069 * 184.99715 * 8 6 5 25 25 H 1.08991 * 109.47625 * 305.00034 * 8 6 5 26 26 H 1.00900 * 111.00172 * 180.02562 * 9 8 6 27 27 H 1.00901 * 111.00083 * 303.94749 * 9 8 6 28 28 H 1.09001 * 109.47630 * 305.00104 * 10 6 5 29 29 H 1.09004 * 109.47346 * 65.00234 * 10 6 5 30 30 H 0.97002 * 119.99729 * 180.02562 * 14 13 11 31 31 H 1.08995 * 109.47144 * 90.00311 * 20 19 5 32 32 H 1.09000 * 109.46717 * 209.99781 * 20 19 5 33 33 H 1.09001 * 109.47175 * 329.99286 * 20 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2868 1.0424 0.0000 4 8 3.4537 0.7254 0.0061 5 6 3.6024 -0.6068 0.0013 6 6 4.9022 -1.3695 0.0027 7 1 4.6954 -2.4397 0.0034 8 6 5.7062 -1.0046 1.2522 9 7 4.9863 -1.4615 2.4485 10 6 5.7079 -1.0065 -1.2462 11 6 6.9495 -1.8583 -1.3083 12 1 7.1442 -2.5862 -0.5345 13 6 7.8368 -1.7086 -2.3528 14 7 7.5995 -0.8226 -3.2953 15 14 9.3755 -2.7650 -2.4301 16 1 9.4082 -3.6782 -1.2595 17 1 9.3643 -3.5650 -3.6811 18 1 10.5767 -1.8922 -2.4114 19 6 2.3539 -1.1320 0.0009 20 6 1.9591 -2.5864 0.0012 21 1 -0.3634 0.0008 1.0276 22 1 -0.3633 0.8897 -0.5146 23 1 -0.3633 -0.8903 -0.5132 24 1 6.6828 -1.4870 1.2096 25 1 5.8368 0.0765 1.2975 26 1 5.4971 -1.2317 3.2877 27 1 4.0533 -1.0784 2.4773 28 1 5.1011 -1.1834 -2.1343 29 1 5.9907 0.0453 -1.2032 30 1 8.2236 -0.7175 -4.0304 31 1 1.8633 -2.9366 1.0289 32 1 1.0053 -2.7040 -0.5131 33 1 2.7230 -3.1703 -0.5121 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260103088.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:43 Heat of formation + Delta-G solvation = 33.183058 kcal Electronic energy + Delta-G solvation = -15602.310265 eV Core-core repulsion = 13051.377029 eV Total energy + Delta-G solvation = -2550.933235 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -44.43932 -36.46996 -34.91218 -32.91706 -32.14337 -30.22003 -28.49211 -27.55274 -25.56777 -23.00899 -21.60552 -21.17613 -18.75585 -17.17348 -16.60476 -16.07159 -15.38263 -14.72096 -14.35456 -13.94900 -13.49289 -13.34572 -12.85923 -12.62281 -12.56477 -12.28479 -12.20434 -12.02102 -11.23459 -11.01581 -10.99214 -10.67871 -10.55630 -10.07135 -9.76269 -9.46616 -9.15503 -8.51278 -8.41976 -8.28278 -6.05448 -4.09229 1.97395 2.59008 3.29060 3.37118 3.40704 3.66194 4.41552 4.51413 4.82200 4.99713 5.21594 5.31463 5.41253 5.51588 5.57567 5.75316 5.80688 5.86966 5.98906 6.04471 6.15620 6.20599 6.45918 6.56472 6.70108 6.81580 7.44097 7.58235 7.63340 7.76302 7.91734 8.28646 8.73089 8.96625 9.55396 11.05687 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.035577 B = 0.007271 C = 0.006888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.837165 B = 3849.748436 C = 4064.355717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.011 3.989 3 N -0.381 5.381 4 O 0.094 5.906 5 C 0.007 3.993 6 C -0.004 4.004 7 H 0.100 0.900 8 C 0.072 3.928 9 N -0.852 5.852 10 C 0.029 3.971 11 C -0.521 4.521 12 H 0.062 0.938 13 C 0.059 3.941 14 N -0.892 5.892 15 Si 0.893 3.107 16 H -0.271 1.271 17 H -0.284 1.284 18 H -0.284 1.284 19 C -0.221 4.221 20 C -0.068 4.068 21 H 0.074 0.926 22 H 0.071 0.929 23 H 0.077 0.923 24 H 0.097 0.903 25 H 0.026 0.974 26 H 0.335 0.665 27 H 0.329 0.671 28 H 0.022 0.978 29 H 0.024 0.976 30 H 0.261 0.739 31 H 0.068 0.932 32 H 0.062 0.938 33 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.194 -1.489 8.046 13.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.148 4.148 3 N -0.088 5.088 4 O 0.031 5.969 5 C -0.056 4.056 6 C -0.024 4.024 7 H 0.118 0.882 8 C -0.058 4.058 9 N -0.380 5.380 10 C -0.009 4.009 11 C -0.559 4.559 12 H 0.080 0.920 13 C -0.143 4.143 14 N -0.530 5.530 15 Si 0.720 3.280 16 H -0.196 1.196 17 H -0.210 1.210 18 H -0.210 1.210 19 C -0.225 4.225 20 C -0.125 4.125 21 H 0.093 0.907 22 H 0.090 0.910 23 H 0.096 0.904 24 H 0.115 0.885 25 H 0.044 0.956 26 H 0.146 0.854 27 H 0.141 0.859 28 H 0.041 0.959 29 H 0.043 0.957 30 H 0.071 0.929 31 H 0.086 0.914 32 H 0.081 0.919 33 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -10.229 -0.817 7.567 12.750 hybrid contribution 0.730 -0.175 -0.026 0.751 sum -9.499 -0.992 7.541 12.169 Atomic orbital electron populations 1.20070 0.86642 1.03244 1.02728 1.23364 0.98460 0.89110 1.03887 1.73799 0.89674 1.24309 1.20989 1.84786 1.21017 1.23342 1.67707 1.24953 0.98766 0.82886 0.99016 1.20260 0.86411 0.97409 0.98320 0.88188 1.21884 0.98295 0.97658 0.88010 1.58890 1.06400 1.67674 1.05052 1.19173 0.94128 0.97786 0.89778 1.21176 1.05566 1.20568 1.08599 0.91978 1.25013 0.98274 0.95397 0.95591 1.69984 1.36814 1.34302 1.11943 0.86523 0.83032 0.80350 0.78058 1.19563 1.21021 1.21017 1.20908 0.91535 0.97686 1.12352 1.20013 1.01506 0.88948 1.02067 0.90689 0.91016 0.90406 0.88506 0.95554 0.85405 0.85925 0.95944 0.95722 0.92923 0.91372 0.91879 0.90814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.81 10.39 36.01 0.37 -0.43 16 2 C 0.01 0.17 7.33 -82.10 -0.60 -0.43 16 3 N -0.38 -7.24 12.07 33.42 0.40 -6.84 16 4 O 0.09 1.90 11.20 17.16 0.19 2.10 16 5 C 0.01 0.14 5.03 -35.30 -0.18 -0.04 16 6 C 0.00 -0.08 2.42 -91.77 -0.22 -0.31 16 7 H 0.10 1.98 7.10 -51.93 -0.37 1.61 16 8 C 0.07 1.31 6.12 -3.82 -0.02 1.28 16 9 N -0.85 -12.91 9.62 -10.37 -0.10 -13.01 16 10 C 0.03 0.72 4.43 -27.88 -0.12 0.60 16 11 C -0.52 -13.90 8.34 -34.44 -0.29 -14.19 16 12 H 0.06 1.59 7.08 -52.49 -0.37 1.22 16 13 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 14 N -0.89 -26.27 13.29 55.43 0.74 -25.53 16 15 Si 0.89 21.02 29.54 -169.99 -5.02 16.00 16 16 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 17 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 18 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 19 C -0.22 -3.67 6.32 -104.42 -0.66 -4.33 16 20 C -0.07 -0.91 10.06 36.01 0.36 -0.55 16 21 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 22 H 0.07 0.80 8.14 -51.92 -0.42 0.37 16 23 H 0.08 0.76 7.66 -51.93 -0.40 0.36 16 24 H 0.10 1.88 6.82 -51.93 -0.35 1.53 16 25 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.33 4.30 9.08 -39.29 -0.36 3.94 16 27 H 0.33 4.89 8.07 -39.29 -0.32 4.57 16 28 H 0.02 0.61 8.14 -51.93 -0.42 0.18 16 29 H 0.02 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 31 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.06 0.71 7.66 -51.93 -0.40 0.31 16 33 H 0.07 1.04 7.40 -51.93 -0.38 0.65 16 LS Contribution 280.96 15.07 4.23 4.23 Total: -1.00 -29.91 280.96 -5.63 -35.54 By element: Atomic # 1 Polarization: 8.98 SS G_CDS: -4.62 Total: 4.36 kcal Atomic # 6 Polarization: -15.39 SS G_CDS: -1.46 Total: -16.85 kcal Atomic # 7 Polarization: -46.42 SS G_CDS: 1.04 Total: -45.38 kcal Atomic # 8 Polarization: 1.90 SS G_CDS: 0.19 Total: 2.10 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -29.91 -5.63 -35.54 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260103088.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.726 kcal (2) G-P(sol) polarization free energy of solvation -29.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.543 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds